BS29967.complete Sequence
2921 bp assembled on 2012-06-18
GenBank Submission: KX802060
> BS29967.complete
GAAGTTATCAGTCGACATGTATCACTTTGTATCCGAGCAAACGCCGGAGG
TGCGGCTCACAGATGAGGCACTGGTCACGAGCCACGTGACGCAGTACCTC
AAGAGCTTTCAACTGGATGCCGTCCGCTTCGTCTACGATCGTTTGGCTAA
GCGGGAATTCTGCATCCTGAATGATGAGAGTGGCCTTGGAAAGGTCGCTA
CGGTGGCGGCACTTCTAAGTGCCCTACCACCCGCCAAAAAAACACTTGTG
GTGCTCCAGAACGATGAGCAACTGCTCACCGGTTGGCGATTCCATTTGGA
CACTCTCACTGACCTCCAGGTGTACATCATTCAGGGGGTGCAAGATACCA
CCGACTCCCCGCACAGCGTTTACCTGGCGAAATGGAGCCAACTACGGAGC
ATTGGAGATCTCAGTCGCCTCAAGTTCGACTACATTATGGTGGATAATCG
GGGGCATTCGCTGAACAACAGCTTTTGCACTTCCATGCTGCTGAAGCAAT
TCGAGGGACGGGTAAACGTTCTTATCTCCAGTGTTGACGTTACGTCCGAC
GTTAGGTTGCTCTACAATGTTCTACGGTTGGGCGGCCGACTGGAGCATCA
GTACAAAAGCTTTGCGAGCTTCGATCGAAAATTCCATCTGCCAGATCCGA
AGGAGGTATTCAGTAAGCGCATAGATCTCGAGGAATACTACAAGCAGCGG
GGATTCCTCAGCGAGTACATCAAGGACTTTCGTCTGCGTCGTTTTCGTCA
TCAATTCGACAAGTCACTGCCACTTGTCGCACCGGAGCAATACAAACACA
ATCTGAATCTCTGGTTGGCCTCAAAGAACAGCCAGAGCACAATAAGCGGC
TCAGATGTGTGCTCTACAATCGCTTCCATAGACAACAATCCGGCTCAGCA
AAATAAAACTGGGCTCTTTGAAGAAACGGATAGGTTATCCGAGCACAGCG
TGGATGATGTGGCAATGTCACCGCTGATATTCGAGTATTCCGAGTCTGAC
GATGAACCCCTAACAGTAGAACCTGATGCAGATCAAAACCCGGTATTAGT
TGTATCCAGCGATGATTGTGAGATTGTAACACCTCCAAGTACTCCGCAAA
ATCGAACGCCCTCATTAAATGAATCACCAAGGACGAAATCAAAGAAAAAA
TTTAGCAAAAAAACGTCACCGCGCAAAAAAGCTGATCTCACCGATTCCGA
AGAGGATGATGAAGCGACCGATAATATGCCGCCAAGGAAGAGAACTCGTG
CAGCCACCGTTCATCTGACACCTAAGACAAGGAGACTCAATGTTCGAATT
TTAAGGGTTTCCCTCGATACTCTGAGCACACCACCACCGTCCAGAACCAC
TACTGCGATCGTAACGCCCAAAACGGAGCCCACAGCTAGAAGAAAAAATC
TGAAAAAGCGCACGGTGAGCCCAGTGGATGTGGGTCGTCCAGCCACAAGG
GGAATGCAGCGCCTAACACGATCCGCTGAAACAAAAATAAACAGTAAGTA
CTTGAAACATCGCTCATTGGATGATGTCAAGCGTAGCTTTCCAAGGAGAG
TCAAGTTGGAGGGTAACCAAACGCCCAGAAGTAGCAAACAAATAGTGAAG
CAGGAGCCTAAGTCTAAAGTCGGGCAGGAAAAGAAACAGAAGACGGTGGA
TGTACCTGCTCAAGGAACTGCGAAACGAAAGCCTGGACGTCCGAGAAAAT
GCCAAACCAAGACTGAAGATTTGGGGAAGACAAAGACTAAGCCGAATTCA
AAGCACTTGCCACCTACTCCTCAAGTTCTCAGTGGTAGCTCGTTGTCCTC
GGAGTACATGCAATGTGCTCAGCGAATACCAGACAATTTGGATGCCATTG
AGTCGCCCGCTTTTCGTGTGCCCTTTACACCTCAACAAACTCCAATGCTT
CTAACCTTGCCGTCTACACACAATTTGCTCAACGATTCTGAGGTGGTGTC
TATTCCGCTTTACAAAGATCCAGTTGAGACAGTGGTGATCAATAGCTCGC
ACGATGAGTGTTCTCCGCAGGATCCATCGCAGAGTCGTCGCACCAAGGCT
TTGAAAAGAAAACGCAAACCCGTGACGTCCGTCAATTCAAGTTTCGGCGG
CGGATTGGGTCTACCACCGGCCAAGAGGAGTGCCAACAAATCTCCAGATC
TATTTAGCATATCCTCGGAACACTCGCAGATTCCGCTGGCGCAACCAAGA
CCCTCATCGCCCTTCGAAGGCTTTAAGATCTTTGGCTCTGAGGTGAAGCA
GTTTCAGCAGCAGCTAGCGAAAGTAAATATATCGGTGCCAAAAAAGAAGC
GAGATCGCTCGTGTTTGGATATCCTGGAGCAAATGTTCGAGCCACGACAA
CAGCAGTCGGCTAAAACTAGTCCCAAAGTCTTGCCAACCTTGCCACTGAC
CCAGAAGGATGATGCAGAGTCTACCATTACGCAGAGAAGAAGAACCCTGC
TGGAAGATGACTTCTTTGAGATAACGAACAATGGCCAATTTGGCAGTCGC
ATGCGATTGAACTCCTCTGGCGAAGTATCGCCCGTGCAACCGGATCAACA
GTCCGTCAGGCCGTCGCAGGCCAATAAAATCACCAATTATTTGATAGGTT
CTGGAATTACGCAGGAGCGAACGCAACCTTCGAATGGTAATCGCAATTCC
ATTCTTGCATCGCTGCGCAAGTCACCCAAATCTCCCAAACAGGGTGCTAA
ATCCACTCAGGCCACGAAACTAACACGCTGGTTTGGCTCCGTCTTCGGCG
GTGGAGCCTCACAGACCAGCTCCGTGGAATCGGTTAGTGCACCAAGTACG
CCGGTGAATTCATCCACAAGTGCAGCAGCTTGTCAAACGCGATCGGCGAG
AAGTGGTGGAGCATCAGGACCGACCAAAAGAAAGCGATTGGAACTGTTCA
AGTGAAAGCTTTCTAGACCAT
BS29967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SuUR-RA | 2889 | CG7869-PA | 1..2889 | 17..2905 | 14445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SuUR-RA | 3776 | CG7869-RA | 404..3293 | 16..2905 | 14450 | 100 | Plus |
| CG45101-RA | 3776 | CG45101-RA | 404..3293 | 16..2905 | 14450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11066361..11068542 | 724..2905 | 10910 | 100 | Plus |
| 3L | 28110227 | 3L | 11065394..11065722 | 16..344 | 1645 | 100 | Plus |
| 3L | 28110227 | 3L | 11065828..11066029 | 343..544 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 11066095..11066275 | 544..724 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:36:53 has no hits.
BS29967.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:33 Download gff for
BS29967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SuUR-RA | 399..3286 | 17..2904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:17 Download gff for
BS29967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SuUR-RA | 405..3292 | 17..2904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:47 Download gff for
BS29967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45101-RA | 405..3292 | 17..2904 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:47 Download gff for
BS29967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11065395..11065722 | 17..344 | 100 | -> | Plus |
| 3L | 11065830..11066029 | 345..544 | 100 | -> | Plus |
| 3L | 11066096..11066274 | 545..723 | 100 | -> | Plus |
| 3L | 11066361..11068541 | 724..2904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:17 Download gff for
BS29967.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11058495..11058822 | 17..344 | 100 | -> | Plus |
| arm_3L | 11058930..11059129 | 345..544 | 100 | -> | Plus |
| arm_3L | 11059196..11059374 | 545..723 | 100 | -> | Plus |
| arm_3L | 11059461..11061641 | 724..2904 | 100 | | Plus |
BS29967.pep Sequence
Translation from 16 to 2904
> BS29967.pep
MYHFVSEQTPEVRLTDEALVTSHVTQYLKSFQLDAVRFVYDRLAKREFCI
LNDESGLGKVATVAALLSALPPAKKTLVVLQNDEQLLTGWRFHLDTLTDL
QVYIIQGVQDTTDSPHSVYLAKWSQLRSIGDLSRLKFDYIMVDNRGHSLN
NSFCTSMLLKQFEGRVNVLISSVDVTSDVRLLYNVLRLGGRLEHQYKSFA
SFDRKFHLPDPKEVFSKRIDLEEYYKQRGFLSEYIKDFRLRRFRHQFDKS
LPLVAPEQYKHNLNLWLASKNSQSTISGSDVCSTIASIDNNPAQQNKTGL
FEETDRLSEHSVDDVAMSPLIFEYSESDDEPLTVEPDADQNPVLVVSSDD
CEIVTPPSTPQNRTPSLNESPRTKSKKKFSKKTSPRKKADLTDSEEDDEA
TDNMPPRKRTRAATVHLTPKTRRLNVRILRVSLDTLSTPPPSRTTTAIVT
PKTEPTARRKNLKKRTVSPVDVGRPATRGMQRLTRSAETKINSKYLKHRS
LDDVKRSFPRRVKLEGNQTPRSSKQIVKQEPKSKVGQEKKQKTVDVPAQG
TAKRKPGRPRKCQTKTEDLGKTKTKPNSKHLPPTPQVLSGSSLSSEYMQC
AQRIPDNLDAIESPAFRVPFTPQQTPMLLTLPSTHNLLNDSEVVSIPLYK
DPVETVVINSSHDECSPQDPSQSRRTKALKRKRKPVTSVNSSFGGGLGLP
PAKRSANKSPDLFSISSEHSQIPLAQPRPSSPFEGFKIFGSEVKQFQQQL
AKVNISVPKKKRDRSCLDILEQMFEPRQQQSAKTSPKVLPTLPLTQKDDA
ESTITQRRRTLLEDDFFEITNNGQFGSRMRLNSSGEVSPVQPDQQSVRPS
QANKITNYLIGSGITQERTQPSNGNRNSILASLRKSPKSPKQGAKSTQAT
KLTRWFGSVFGGGASQTSSVESVSAPSTPVNSSTSAAACQTRSARSGGAS
GPTKRKRLELFK*
BS29967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SuUR-PA | 962 | CG7869-PA | 1..962 | 1..962 | 4922 | 100 | Plus |
| Mur2B-PB | 1144 | CG14796-PB | 501..1081 | 358..935 | 169 | 19.7 | Plus |
| Mur2B-PC | 1795 | CG14796-PC | 501..1081 | 358..935 | 169 | 19.7 | Plus |
| Mur2B-PA | 1795 | CG14796-PA | 501..1081 | 358..935 | 169 | 19.7 | Plus |
