BS29969.complete Sequence
3257 bp assembled on 2012-06-18
GenBank Submission: KX801061
> BS29969.complete
GAAGTTATCAGTCGACATGCCAGATAGATTTCAAGTTACAAAGGCTGACG
AGGACACCGCGTTGGACTACAACCAGGATGAGTCTGCGAGCGGCAAGCTA
CTGGGGGACATCCACGACGAAACCCTAGGTGAGAACTATGGGTCGTACGA
TGACTCAGGTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAGCATCG
ACCCAAATCTATATCTGTACGACGATGATTTGGAGACCAGGCCCCATATA
TCAACGTTCATTTCATCAATTGCCAATTATGAGAACACGATACCAGCGGC
CACCGATCCCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGGTACCC
TAATTGGAGTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCATATTG
TTCATTCGGTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGTGGATT
CCTGATTGTTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGATCTCGA
TGTCGGCCATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTTACTTC
ATGATATCACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGAATGTT
GTTCTATACGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGGTGCCG
TGGAAATCGTATTGACATACATGGCGCCGTGGGCATCGATATTTGGGGAC
TTCACCAAGGACGCTGACGCGATGTACAACAATTTCAGGGTCTACGGCAC
TTTGCTGCTCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAAATTCG
TCAATAAGTTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGATAATA
GCGGTGTATGTGGGAATATTTGACAATATCCATGGCAACGAAAAGCTATA
CATGTGTGTTCTGGGAAAACGACTCTTGAAGGATATCCCGCTGGAGAATT
GCACAAAGGAAGACTCCTTCTTACGCGACATATACTGCCCAGATGGTAAA
TGCGAGGAATACTACCTGGCCAATAACGTGACCAAAGTCAAGGGCATCAA
GGGTTTGGCCAGTGGCGTGTTCTACGACAACATCTTCCCTTCGTTCCTGG
AGAAGGGCCAGTTCATATCCTACGGCAAGAGTGCAATTGACATTGAGAAC
ACTAGTGGAGAGTCATACAACCAGATCATGGCCGACATTACCACGTCGTT
CACCCTTCTTATCGGCATCTTCTTCCCATCGGTCACAGGCATCATGGCTG
GATCCAATCGATCGGGCGACCTGGCTGACGCCCAGAAGAGCATACCCATC
GGAACGATATGTGCCATTCTGACCACCAGCACAGTCTACTTGTCCAGCGT
TATGTTCTTCGCCGGCACAGTGGACAATCTCCTGTTGAGGGACAAATTCG
GTCAGTCTATTGGTGGCAAGCTGGTGGTGGCCAATATTGCCTGGCCAAAT
CAGTGGGTCATTCTGATTGGCTCCTTCCTCTCCACCTTGGGCGCTGGTCT
GCAGAGTTTGACTGGAGCACCCCGACTGCTGCAGGCGATTGCGAGGGATG
AGATCATCCCCTTCCTGGCTCCATTTGCCAAGTCTTCGAAGCGTGGCGAA
CCCACCCGTGCGCTGCTCCTGACCATTGTCATTTGCCAGTGCGGCATCCT
GTTGGGCAACGTGGACTTGCTGGCTCCTCTGCTGTCCATGTTCTTCCTCA
TGTGCTACGGCTTTGTCAACCTGGCCTGCGCTGTGCAAACCCTGCTGAGG
ACTCCCAACTGGAGACCGCGCTTCAAGTTCTACCACTGGAGCTTGTCGCT
CATCGGCCTGACGCTGTGCATATCAGTCATGATCATGACTTCCTGGTATT
TCGCACTGATTGCTATGGGAATGGCCATCATTATCTACAAATACATAGAG
TACCGCGGTGCTGAGAAGGAGTGGGGTGATGGCATTCGTGGAATGGCCCT
GACCGCCGCCAGGTACTCGCTACTCCGTCTGGAGGAAGGCCCACCGCATA
CGAAAAATTGGCGTCCCCAAATTTTGGTGCTTTCGAAGCTCAACGACAAC
CTCTTGCCAAAATACAGGAAGATATTCTCCTTTGCCACCCAGCTGAAAGC
TGGCAAGGGATTGACGATTTGTGTGTCTGTGATAAAGGGCGACCACACTA
AGATCACTAACAAAGCCGTGGATGCGAAGGCCACGCTGCGCAAGTACATG
ACCGACGAGAAGGTGAAGGGCTTCTGTGATGTCCTGGTAGCCCAGCAGAT
TGGCGAGGGCCTCAGCTCAGTCATCCAAACCATCGGACTGGGGGGCATGA
AGCCCAACACAGTCATCATCGGATGGCCGTACAGCTGGCGACAGGAGGGC
AGGAACAGCTGGAAGACCTTCATCCAAACGGTCCGCACGGTGGCCGCCTG
CCACATGGCCCTCATGGTGCCCAAGGGCATCAACTTCTATCCAGAATCAA
ACCACAAAATCGGTGGTAACATTGATATCTGGTGGATTGTCCACGACGGT
GGTCTGCTCATGTTGCTGCCCTTCCTGCTGAAGCAACATCGCACCTGGCG
CAATTGCAAGCTAAGGATCTTCACAGTTGCTCAAATCGAGGACAACTCGA
TTCAAATGAAGAAGGATCTAAAGACATTCCTCTACCATCTTCGAATCGAG
GCCGATGTTGAAGTTGTTGAGATGAACAACAGCGATATTTCCGCTTATAC
CTACGAGCGGACCCTGATGATGGAACAGCGTAATCAGATGCTGAGAGCAT
TAGGCTTAAATAAGAAAGAAAACTCCAAAGTGGTTCAAACAATTGTAGAC
CACCATTATGACGCCACCAAAACGGCGTCTAAAGTTCGCTTCGCCGATCC
AACTATAGAAGAAACACAGCATCACGATTCTCAAAACGACGAGAAACGTA
ACTCAATTGATTTGGATGGTCCCGAGAACGCGGACACACCCGAAACTACT
TCTAACAAGGATGAATCGACAGAGAAAGCCGACGGAGACTTCAAGTCCAG
TGTGAAACCGGATGAGTTCAACGTTCGTCGCATGCACACAGCAATAAAAC
TAAACGAGGTTATTGTAGAAAAGTCACAGGACGCCCAGTTGGTCATAATG
AATCTACCTGGACCACCTAGGGAGGTGAGAGCGGAGCGTGAAAGAAATTA
TATGGAATTTCTGGAGGTATTAACAGAGGGCCTTGAAAAAGTGTTAATGG
TTCGCGGAGGAGGCCGAGAAGTTATAACAATTTACTCTTAAAAGCTTTCT
AGACCAT
BS29969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RD | 3225 | CG5594-PD | 1..3225 | 17..3241 | 16110 | 100 | Plus |
| kcc-RE | 3225 | CG5594-PE | 1..3225 | 17..3241 | 16110 | 100 | Plus |
| kcc-RC | 3180 | CG5594-PC | 91..3180 | 152..3241 | 15435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RD | 3883 | CG5594-RD | 502..3730 | 17..3245 | 16115 | 99.9 | Plus |
| kcc-RE | 4154 | CG5594-RE | 773..4001 | 17..3245 | 16115 | 99.9 | Plus |
| kcc-RC | 3544 | CG5594-RC | 298..3391 | 152..3245 | 15440 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23921964..23922327 | 1908..2271 | 1820 | 100 | Plus |
| 2R | 25286936 | 2R | 23913758..23914018 | 1396..1656 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 23914078..23914331 | 1655..1908 | 1270 | 100 | Plus |
| 2R | 25286936 | 2R | 23913267..23913487 | 1019..1239 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 23922641..23922856 | 2459..2674 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 23911676..23911871 | 152..347 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 23922392..23922578 | 2272..2458 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 23913540..23913698 | 1237..1395 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 23924616..23924755 | 3010..3149 | 685 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23909698..23909833 | 17..152 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 23924416..23924554 | 2876..3014 | 680 | 99.3 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 344..478 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 770..900 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913204 | 901..1019 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 23922921..23923031 | 2674..2784 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 664..772 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 561..664 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23924001..23924095 | 2782..2876 | 475 | 100 | Plus |
| 2R | 25286936 | 2R | 23924818..23924913 | 3150..3245 | 465 | 99 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 478..561 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2316..2357 | 862..903 | 120 | 76.2 | Plus |
BS29969.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:37 Download gff for
BS29969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RD | 525..3747 | 17..3239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:27 Download gff for
BS29969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..3995 | 17..3239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:56 Download gff for
BS29969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..3995 | 17..3239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:56 Download gff for
BS29969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23924002..23924094 | 2783..2875 | 100 | -> | Plus |
| 2R | 23921965..23922327 | 1909..2271 | 100 | -> | Plus |
| 2R | 23922392..23922578 | 2272..2458 | 100 | -> | Plus |
| 2R | 23922641..23922856 | 2459..2674 | 100 | -> | Plus |
| 2R | 23922922..23923029 | 2675..2782 | 100 | -> | Plus |
| 2R | 23924416..23924549 | 2876..3009 | 100 | -> | Plus |
| 2R | 23924616..23924755 | 3010..3149 | 99 | -> | Plus |
| 2R | 23924818..23924907 | 3150..3239 | 100 | | Plus |
| 2R | 23913758..23914017 | 1396..1655 | 100 | -> | Plus |
| 2R | 23914079..23914331 | 1656..1908 | 100 | -> | Plus |
| 2R | 23912532..23912634 | 562..664 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 665..770 | 100 | -> | Plus |
| 2R | 23912897..23913026 | 771..900 | 100 | -> | Plus |
| 2R | 23913086..23913204 | 901..1019 | 100 | -> | Plus |
| 2R | 23913268..23913486 | 1020..1238 | 100 | -> | Plus |
| 2R | 23913542..23913698 | 1239..1395 | 100 | -> | Plus |
| 2R | 23909698..23909833 | 17..152 | 100 | -> | Plus |
| 2R | 23911677..23911868 | 153..344 | 100 | -> | Plus |
| 2R | 23912188..23912321 | 345..478 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 479..561 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:27 Download gff for
BS29969.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19800609..19800727 | 901..1019 | 100 | -> | Plus |
| arm_2R | 19801065..19801221 | 1239..1395 | 100 | -> | Plus |
| arm_2R | 19800791..19801009 | 1020..1238 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 562..664 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 665..770 | 100 | -> | Plus |
| arm_2R | 19800420..19800549 | 771..900 | 100 | -> | Plus |
| arm_2R | 19797221..19797356 | 17..152 | 100 | -> | Plus |
| arm_2R | 19799200..19799391 | 153..344 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 345..478 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 479..561 | 100 | -> | Plus |
| arm_2R | 19801281..19801540 | 1396..1655 | 100 | -> | Plus |
| arm_2R | 19801602..19801854 | 1656..1908 | 100 | -> | Plus |
| arm_2R | 19809488..19809850 | 1909..2271 | 100 | -> | Plus |
| arm_2R | 19809915..19810101 | 2272..2458 | 100 | -> | Plus |
| arm_2R | 19810164..19810379 | 2459..2674 | 100 | -> | Plus |
| arm_2R | 19810445..19810552 | 2675..2782 | 100 | -> | Plus |
| arm_2R | 19811525..19811617 | 2783..2875 | 100 | -> | Plus |
| arm_2R | 19811939..19812072 | 2876..3009 | 100 | -> | Plus |
| arm_2R | 19812139..19812278 | 3010..3149 | 99 | -> | Plus |
| arm_2R | 19812341..19812430 | 3150..3239 | 100 | | Plus |
BS29969.pep Sequence
Translation from 16 to 3240
> BS29969.pep
MPDRFQVTKADEDTALDYNQDESASGKLLGDIHDETLGENYGSYDDSGDI
HRAEENQKSSIDPNLYLYDDDLETRPHISTFISSIANYENTIPAATDPDA
KPAAPSARMGTLIGVFLPCIQNIFGVILFIRLTWVVGTAGAVCGFLIVLT
CCCVTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGMLFYTGT
TLAAAMYIVGAVEIVLTYMAPWASIFGDFTKDADAMYNNFRVYGTLLLIF
MGLIVFLGVKFVNKFATVALACVILSIIAVYVGIFDNIHGNEKLYMCVLG
KRLLKDIPLENCTKEDSFLRDIYCPDGKCEEYYLANNVTKVKGIKGLASG
VFYDNIFPSFLEKGQFISYGKSAIDIENTSGESYNQIMADITTSFTLLIG
IFFPSVTGIMAGSNRSGDLADAQKSIPIGTICAILTTSTVYLSSVMFFAG
TVDNLLLRDKFGQSIGGKLVVANIAWPNQWVILIGSFLSTLGAGLQSLTG
APRLLQAIARDEIIPFLAPFAKSSKRGEPTRALLLTIVICQCGILLGNVD
LLAPLLSMFFLMCYGFVNLACAVQTLLRTPNWRPRFKFYHWSLSLIGLTL
CISVMIMTSWYFALIAMGMAIIIYKYIEYRGAEKEWGDGIRGMALTAARY
SLLRLEEGPPHTKNWRPQILVLSKLNDNLLPKYRKIFSFATQLKAGKGLT
ICVSVIKGDHTKITNKAVDAKATLRKYMTDEKVKGFCDVLVAQQIGEGLS
SVIQTIGLGGMKPNTVIIGWPYSWRQEGRNSWKTFIQTVRTVAACHMALM
VPKGINFYPESNHKIGGNIDIWWIVHDGGLLMLLPFLLKQHRTWRNCKLR
IFTVAQIEDNSIQMKKDLKTFLYHLRIEADVEVVEMNNSDISAYTYERTL
MMEQRNQMLRALGLNKKENSKVVQTIVDHHYDATKTASKVRFADPTIEET
QHHDSQNDEKRNSIDLDGPENADTPETTSNKDESTEKADGDFKSSVKPDE
FNVRRMHTAIKLNEVIVEKSQDAQLVIMNLPGPPREVRAERERNYMEFLE
VLTEGLEKVLMVRGGGREVITIYS*
BS29969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-PD | 1074 | CG5594-PD | 1..1074 | 1..1074 | 5576 | 100 | Plus |
| kcc-PE | 1074 | CG5594-PE | 1..1074 | 1..1074 | 5576 | 100 | Plus |
| kcc-PF | 1066 | CG5594-PF | 1..1066 | 1..1074 | 5510 | 99.3 | Plus |
| kcc-PA | 1043 | CG5594-PA | 1..1043 | 1..1074 | 5368 | 97.1 | Plus |
| kcc-PC | 1059 | CG5594-PC | 7..1059 | 20..1074 | 5348 | 98 | Plus |
