BS29971.complete Sequence
2201 bp assembled on 2012-06-18
GenBank Submission: KX805112
> BS29971.complete
GAAGTTATCAGTCGACATGTTGGATCGATGCGAAATGCCGATCCAGCTGG
ACAACGAGAAGTTGCGGCGGGATGTTCGATTGTCGGGCTCTCGACTTGAT
TTGCCACAACTCTGTAATGGATCCCGTCGGTTGGATGGCCACAACAACCA
TGTGGCTGCCAATGAGAACACGGTTACAACGACATCCCTGAATGGAAATG
GCAACGGCAATGGCAATAGCAATAGCAACAACAACAACAACATCGGATCG
CCCGTCTCCTCATCGACAACAAACAGCAGTAATGGCGGCAACGAGCGCGG
CTCCTCCACAAAGTCCAATAGCAGCAGTGGAAGTGGCAGCTCGGGAAACT
CGGCCAGCAGCACGGGAAGTGGCGAGCTCAAATGCAATACGCCCATGACG
CCATCTGAGCTGGTGAAGAAGTTCCGCAACTACCTAACCGATCTTGAGTT
CGAAGAGCTCAAGGTGTACAAGGAAGTGTGGTATTTTGGCCAGCACGCCA
GCAAGAACTACAACAAACCCGCCCCCACAGCCAATACCACAAATCTGGGC
TATGACGATGATAATGGCAACTACAAGATCATCGAACACGATCACATAGC
TTTTCGTTACGAGATTCTGGAGGTAATTGGCAAGGGCAGTTTTGGCCAGG
TCATCAGGGCGCTGGATCACAAGACCAACACACACGTGGCCATCAAGATC
ATAAGGAACAAGAAGCGCTTCCTCAACCAGGCCGTCGTCGAACTGAATAT
CCTCGATGAGCTGCGCGAAAAGGACGCGGATGGATCTCATAATGTCATAC
ACATGCTCGACTATACATATTTCCGCAAGCATTTGTGTATTACTTTTGAG
CTAATGAGCTTGAACCTGTACGAATTGATAAAGAAGAACAACTACAATGG
ATTCAGCATGAGTCTCATACGACGCTTCTGCAACTCGATTGTGAAGTGCC
TGCGTTTGCTCTATAAGGAAAACATTATTCACTGTGATCTCAAGCCGGAA
AATATCTTGCTCAAACAGCGTGGTAGCAGCTCCATTAAAGTTATCGACTT
TGGCAGCTCATGCTACGTGGATCGCAAAATCTATACGTACATCCAATCGA
GGTTCTATCGCTCCCCGGAGGTGATTCTCGGCCTGCAATACGGCACAGCC
ATCGATATGTGGAGCTTGGGCTGCATTCTGGCCGAGCTGTACACAGGATT
CCCGCTCTTCCCTGGCGAAAATGAAGTGGAGCAGTTAGCCTGCATCATGG
AGGTGCTCGGTTTGCCGCCTAAGGTGCTCATATCGGTTGCCAGGCGACGT
CGGCTGTTCTTTGATTCCCGTGATGCCCCGCGCTGCATAACTAACACCAA
GGGACGCAAACGGTCGCCAGGCAGCAAGTCGCTGGCACATATCTTGCACT
GCCAGGACCGCTATTTCATCGACTTCCTGCAGCGTTGCTTGGAGTGGGAT
CCTGCGGAGCGGATGACGCCGGACGAGGCGGCCCACCACGAGTTTCTGCA
GCCATCTGCCTCCAGTCGCCATCGCAGCTGCCGCATGTCGAGCAGTTCGT
CCAGTTCCGGACTCAACAGTGTTTCCCAGAAGTCTTCCTGCTACAGCTTT
TCGGAGATCTCGCCGGGCACCAACGGTCCCGTGGTGGCCTCGATCACCAG
CACCACGGCGGTGCACAATGCCGCGATTGCTACCACAACCAAGTCGAGAC
AGCAGCCGCCATCTCAGAGTCACGGCCATGCCCAATCGAATGGACACCTG
CCCGACATCAAGTTAAGTGCCAGCGATAAGTACAATAGCATGCAGAAGGT
GGCGGTGCGCTCGAAGATCACGTCCAGCGTCTCGGATCTGGAGTCCGTGC
AGCAGTACTCACTGCACCGCATCTACGGAGGAGTGGGTAGTGGCAGCACA
CACCATGTCTCGTCAGCGGCCACCAGGAAACATTTGCCCGGTACAGGCAG
TGGAATTGTGGGTGCCATGTCTTCCAAATACGGCAGCTCAACGTTGGCGC
ACAACCATCACAATGTGACGCACCACAATGCATCGACTGCCACCATTGCA
ACGACCACGCACCACCATCACCACCATGGTGGGCAGCAGCAACAGCAGTC
GTCGTCGGGAGCATCCACCATGGCCATGTCGCACTCACAGTCCACTGGAG
ATGTTTCCGACAGGGCCATCTTTGGGAGAGCTTGAAAGCTTTCTAGACCA
T
BS29971.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk2-RF | 2241 | CG4551-PF | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| Dyrk2-RE | 2169 | CG4551-PE | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| Dyrk2-RD | 2169 | CG4551-PD | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk2-RF | 4663 | CG4551-RF | 835..3003 | 17..2185 | 10845 | 100 | Plus |
| Dyrk2-RE | 4590 | CG4551-RE | 762..2930 | 17..2185 | 10845 | 100 | Plus |
| Dyrk2-RD | 4417 | CG4551-RD | 589..2757 | 17..2185 | 10845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14186138..14187154 | 2185..1169 | 5085 | 100 | Minus |
| 2L | 23513712 | 2L | 14196927..14197299 | 407..35 | 1850 | 99.7 | Minus |
| 2L | 23513712 | 2L | 14195733..14196010 | 858..581 | 1390 | 100 | Minus |
| 2L | 23513712 | 2L | 14188863..14189036 | 1170..997 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 14196075..14196248 | 580..407 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 14189094..14189235 | 998..857 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:37:12 has no hits.
BS29971.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:35 Download gff for
BS29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RA | 762..2924 | 22..2184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:22 Download gff for
BS29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi35A-RD | 594..2756 | 22..2184 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:52 Download gff for
BS29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dyrk2-RD | 594..2756 | 22..2184 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:52 Download gff for
BS29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14186139..14187153 | 1170..2184 | 100 | <- | Minus |
| 2L | 14188864..14189035 | 998..1169 | 100 | <- | Minus |
| 2L | 14189095..14189233 | 859..997 | 100 | <- | Minus |
| 2L | 14195733..14196010 | 581..858 | 100 | <- | Minus |
| 2L | 14196075..14196247 | 408..580 | 100 | <- | Minus |
| 2L | 14196927..14197293 | 41..407 | 100 | <- | Minus |
| 2L | 14197657..14197675 | 22..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:22 Download gff for
BS29971.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14196927..14197293 | 41..407 | 100 | <- | Minus |
| arm_2L | 14197657..14197675 | 22..40 | 100 | | Minus |
| arm_2L | 14186139..14187153 | 1170..2184 | 100 | <- | Minus |
| arm_2L | 14188864..14189035 | 998..1169 | 100 | <- | Minus |
| arm_2L | 14189095..14189233 | 859..997 | 100 | <- | Minus |
| arm_2L | 14195733..14196010 | 581..858 | 100 | <- | Minus |
| arm_2L | 14196075..14196247 | 408..580 | 100 | <- | Minus |
BS29971.pep Sequence
Translation from 16 to 2184
> BS29971.pep
MLDRCEMPIQLDNEKLRRDVRLSGSRLDLPQLCNGSRRLDGHNNHVAANE
NTVTTTSLNGNGNGNGNSNSNNNNNIGSPVSSSTTNSSNGGNERGSSTKS
NSSSGSGSSGNSASSTGSGELKCNTPMTPSELVKKFRNYLTDLEFEELKV
YKEVWYFGQHASKNYNKPAPTANTTNLGYDDDNGNYKIIEHDHIAFRYEI
LEVIGKGSFGQVIRALDHKTNTHVAIKIIRNKKRFLNQAVVELNILDELR
EKDADGSHNVIHMLDYTYFRKHLCITFELMSLNLYELIKKNNYNGFSMSL
IRRFCNSIVKCLRLLYKENIIHCDLKPENILLKQRGSSSIKVIDFGSSCY
VDRKIYTYIQSRFYRSPEVILGLQYGTAIDMWSLGCILAELYTGFPLFPG
ENEVEQLACIMEVLGLPPKVLISVARRRRLFFDSRDAPRCITNTKGRKRS
PGSKSLAHILHCQDRYFIDFLQRCLEWDPAERMTPDEAAHHEFLQPSASS
RHRSCRMSSSSSSSGLNSVSQKSSCYSFSEISPGTNGPVVASITSTTAVH
NAAIATTTKSRQQPPSQSHGHAQSNGHLPDIKLSASDKYNSMQKVAVRSK
ITSSVSDLESVQQYSLHRIYGGVGSGSTHHVSSAATRKHLPGTGSGIVGA
MSSKYGSSTLAHNHHNVTHHNASTATIATTTHHHHHHGGQQQQQSSSGAS
TMAMSHSQSTGDVSDRAIFGRA*
BS29971.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dyrk2-PF | 746 | CG4551-PF | 1..722 | 1..722 | 3779 | 100 | Plus |
| Dyrk2-PE | 722 | CG4551-PE | 1..722 | 1..722 | 3779 | 100 | Plus |
| Dyrk2-PD | 722 | CG4551-PD | 1..722 | 1..722 | 3779 | 100 | Plus |
| Dyrk2-PA | 722 | CG4551-PA | 1..722 | 1..722 | 3779 | 100 | Plus |
| Dyrk2-PB | 722 | CG4551-PB | 1..722 | 1..722 | 3779 | 100 | Plus |
