BS29976.complete Sequence
3344 bp assembled on 2012-06-18
GenBank Submission: KX806525
> BS29976.complete
GAAGTTATCAGTCGACATGCTACACGTCCTGTTTTCCGTTCTCCTCATGG
CCACGGCCAACACGGCCGCGGACACCCTCCAGCGCAGCCGGCGAGTAGCA
ATCGACGTGGATAACGCAAAAGACATGCACAGCATTATCGACTTGGCCGA
GTGCCAGGATCTAAAGAAACTCTGCGCGCACCACAAGTCCACCGACAATC
TGTCCATGCTGGAGTGCGCCCTGACATTCAGCTCTAGCCAGTTGATGGAT
CTCCCGGAGGGTTGCCAGAACGCTCTGTGGATGCAGCAGCGCCAGTTGCA
GTTGCCCGCTTGGTTAGAGAGCACTTTCCTGCCCGCTTATTGTCCCGCCG
AGCGGCCCAAGCTGGAGAGCTGCCTGAACGCAGTGCACCTGTGGAGCTGC
CTGGAGCAGCAGCGATTAAAGCTACTGCAGAACAACGCCTGCCATCAGCA
CCTTCGAAGGGCCTACGAGTCCTTGGGGCAGGACTACAGCGCCGTAGACG
AGTTCTACACCGCCTGCGGACCACTCGTGGAGGAAAACAAGTGTGGCCGA
CTGAATGTCGACCACCTGCCTTCCGTGCTGTCGCAGCTGACAACGGTTCA
ATGCCTACAGGAGAGTGCCACCAAGACCGGCATCGAGCCAGTTTGCCAGG
CAGCCATCAATTCTATTGAGCTCTTTCGCGTCTGCCAGGAGGATTTTTCG
TCCTTTTGCTCGCAGGAAAAGTCCGGCACTGCTGCCGGGTACAAGTGCCT
CGTGCGGCACAAGAACCACCCCTCCATGTCTTCCCAGTGCTCCGCACGAA
TCACTTTGAGGGACCAGCAAATAGGCCGCGACTACCGCGTGTCCCACGGT
CTGGCTAAGGCCTGTAAGGACGACATTAAGTTGTACCACTGCCGGCGCGG
CGTCTCTGAAGACAAGCACGTGCGGTTGGCTCAGATCCTGCTATGCCTGG
AATCAGTGTCCAAAAACGGGACTAAACTGGCGCCCCCTTGTCTCACGGAG
TTAACAGATCACCGCCGCATGCTGATGACCGACTACCAGCTGTCACCGGA
GCTACTCAACGACTGTGCGGATGACATACCCAAGTTCTGTCCGGACGAGC
ACAAGGCGCAGCTGGTGAATGGCATGACAAGTACAGGTGGCGAGATCATC
CACTGCCTGTTAGAGCACGTTAAGGCTAGGCGTCCGCAAAGACGGGTGAC
GGCACAATGTCAGCGAGGACTGGAGACACTGATTAAGGCCAGCGATGCTG
GAGAGGATTGGCGAGTCGATCCGGTGCTTAGACGCGCATGCAAACCAGTG
GTGGATGTGGTCTGCAGGGATGTGCAGGGCGGTGAAGCACGAGTCATGGG
TTGTTTGATGGAGCACATTGGCACTCCGGTTATGCTGCCCGATTGCGAGC
AGGCCCTTCTCATTATTGAGTATTTCGTTGCCAGAGATTTCAAGTTGGAT
CCCCAGCTGTACAAACACTGCCGCGATGACGCTGTGAAGTACTGCCGTGC
AAAGAAGCAATGGGATGATGCGCAGAACATACAAATGGATCCGGAAAGGG
GACCCATGATCCTGCCCTGCCTACATCGCATGGCCTTCAGCGAGGACGAG
CACCAAACTTTGAGGAAGGACTGTTTTCAGGAGGTGAAGCGAGTGATGAG
ACAACGCGCAATATCCATGGACTTGATTCCTGAGGTAGAGGATTACTGTT
TGAACGATCTTTCTGCGTTCTGCGCGGACTGCACAGAGAAGGGAAGTGAA
ATGGAGTGTCTGCAAAAGAACATGGACCAACTGCAGCCGGAGTGCAAGAC
AGTTGTGGTCAAGTATACGGAGGAGGAGGCAGCCCACGTCGAGCTCAACC
CCGTCATAATGAACGTTTGCGGAGAGGCCATGCAGCAGCACTGCTCGGCG
ATCCTCAAAAGCGGAAAAGACAATGGCGACATGATGGACTGTCTTATAGC
GCACAAGAACGACGCAGATCTGCGCAAGGATCTCCGCTGTCGGGCTGCCA
TCGAGCACTTCCAGATCATTTCGCTAAAGAGCTTCCACTTCACTACAAAG
TTCAAGGAGGCGTGCCGTCCGTATGTCCAGCGCTTTTGCTCCTCCAGTGC
CACCAAAAACGAAGTGGTAGCTTGCCTCAGTGAGGTCATGCGCAACGACA
CAATCAAGGCGCAGCGTCACCAGATCCCCAAGGAGTGCCGCCACCAGGTG
AAGGCACAACTCTACCAGCAGCGCGAGAGCATTCAACTGGACCCCAAGCT
GGCCAACGCCTGTAAGCGTGAACTGGAGCAATTCTGCGAGGAGGAAAAGG
GGCCCGGTCAGGCTCTGGAGTGCCTTATAAGAAAGACCCATAGTTTGGGG
AAGCCGTGTCATCATGCGATCTTCATGGTAAAGAAGTCTGAGTTGGGCGA
CAGTGGCACCGACTATACGCTTCTCACCACGTGCAAGGAAATGATCTACA
AGTTCTGCCCCAGCACGGATTCGTCAAAACTACTGGACTGCCTCAAGACG
TACAAGGATGACACGCAGTTCGACCAGCGGTGTCACCTGGTGGTTGTTAA
TCGCATGATCGAGCAAAACACCGACTTTCGATTCAATCCCTCACTGCAAA
GCGCCTGTGGAAAGAACATCGATCGGTATTGCTCCAACATTGTGGCCAGC
GCTTTGCCTAATGAGGAACTAAACGGAAAGGTGATTCACTGTCTAAAAGA
CAAGTTCCGCCAATCTGCGCTGGACGAACCATGTGCGAAGGAGATGATCA
AGATCCTGCAGGAGCAGGCTCTCAACTACAAGTTAAACCCCCTGCTGCAG
GTGTTCTGCAAGTCGGAGATCCAGGAACTGTGCAAGGCAAATGTGGATTC
CGACGAGCACGGCCAGCTGGCGGAGTGCTTGAAGACGGCCTTCCTGCAGA
AGCAGATCATCAACCGGCAGTGCCAGATGGAGGTGGCCACTCTGATCGCC
GAAGCCAAGGCAGACATTCACGTTGATCCCATTCTTGAAACGGCGTGCAC
GGTCGATCTGCTGAGATACTGTTCCAAAGTGGCAGCTGGCAATGGACGCA
AACTTAATTGCTTAAGGACGCTGCTGAAGGATACGCCGAACTCGTTAGAG
GCGGACTGCCGAGAAAAGCTGCAGCGACGCATAGAGATGTTCAGGAACGC
AGACGACACGTTGGCGCTTCCGCCCGAGGATGTGCAGCAGCTAGTGCAAC
AAGTCGTCGCCTCTCCGGCGCGGAAATTCTTCCTTGTGATACTAATGAGC
GCCACGGGCCTGGTCTTCCTCACCGGCATCTTCCTGGGACGGGCCACCAA
ACGGGCAATGGGCTTAAAGAATAAATAAAAGCTTTCTAGACCAT
BS29976.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glg1-RA | 3312 | CG33214-PA | 1..3312 | 17..3328 | 16560 | 100 | Plus |
| Glg1-RB | 3324 | CG33214-PB | 1..3324 | 17..3328 | 16405 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:37:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glg1-RA | 4390 | CG33214-RA | 411..3724 | 15..3328 | 16570 | 100 | Plus |
| Glg1-RB | 4402 | CG33214-RB | 411..3736 | 15..3328 | 16415 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21505015..21506228 | 1926..713 | 6070 | 100 | Minus |
| 3L | 28110227 | 3L | 21506427..21507128 | 716..15 | 3510 | 100 | Minus |
| 3L | 28110227 | 3L | 21504553..21504940 | 2312..1925 | 1940 | 100 | Minus |
| 3L | 28110227 | 3L | 21503987..21504362 | 2684..2309 | 1880 | 100 | Minus |
| 3L | 28110227 | 3L | 21500558..21500929 | 3050..2679 | 1860 | 100 | Minus |
| 3L | 28110227 | 3L | 21498215..21498492 | 3328..3051 | 1390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:37:35 has no hits.
BS29976.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:39 Download gff for
BS29976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33214-RA | 418..3716 | 17..3315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:32 Download gff for
BS29976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glg1-RA | 413..3711 | 17..3315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:59 Download gff for
BS29976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Glg1-RA | 413..3711 | 17..3315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:59 Download gff for
BS29976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21498228..21498492 | 3051..3315 | 100 | <- | Minus |
| 3L | 21500558..21500927 | 2681..3050 | 100 | <- | Minus |
| 3L | 21503991..21504359 | 2312..2680 | 100 | <- | Minus |
| 3L | 21504554..21504939 | 1926..2311 | 100 | <- | Minus |
| 3L | 21505016..21506225 | 716..1925 | 100 | <- | Minus |
| 3L | 21506428..21507126 | 17..715 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:32 Download gff for
BS29976.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21491328..21491592 | 3051..3315 | 100 | <- | Minus |
| arm_3L | 21493658..21494027 | 2681..3050 | 100 | <- | Minus |
| arm_3L | 21497091..21497459 | 2312..2680 | 100 | <- | Minus |
| arm_3L | 21497654..21498039 | 1926..2311 | 100 | <- | Minus |
| arm_3L | 21498116..21499325 | 716..1925 | 100 | <- | Minus |
| arm_3L | 21499528..21500226 | 17..715 | 100 | | Minus |
BS29976.pep Sequence
Translation from 16 to 3327
> BS29976.pep
MLHVLFSVLLMATANTAADTLQRSRRVAIDVDNAKDMHSIIDLAECQDLK
KLCAHHKSTDNLSMLECALTFSSSQLMDLPEGCQNALWMQQRQLQLPAWL
ESTFLPAYCPAERPKLESCLNAVHLWSCLEQQRLKLLQNNACHQHLRRAY
ESLGQDYSAVDEFYTACGPLVEENKCGRLNVDHLPSVLSQLTTVQCLQES
ATKTGIEPVCQAAINSIELFRVCQEDFSSFCSQEKSGTAAGYKCLVRHKN
HPSMSSQCSARITLRDQQIGRDYRVSHGLAKACKDDIKLYHCRRGVSEDK
HVRLAQILLCLESVSKNGTKLAPPCLTELTDHRRMLMTDYQLSPELLNDC
ADDIPKFCPDEHKAQLVNGMTSTGGEIIHCLLEHVKARRPQRRVTAQCQR
GLETLIKASDAGEDWRVDPVLRRACKPVVDVVCRDVQGGEARVMGCLMEH
IGTPVMLPDCEQALLIIEYFVARDFKLDPQLYKHCRDDAVKYCRAKKQWD
DAQNIQMDPERGPMILPCLHRMAFSEDEHQTLRKDCFQEVKRVMRQRAIS
MDLIPEVEDYCLNDLSAFCADCTEKGSEMECLQKNMDQLQPECKTVVVKY
TEEEAAHVELNPVIMNVCGEAMQQHCSAILKSGKDNGDMMDCLIAHKNDA
DLRKDLRCRAAIEHFQIISLKSFHFTTKFKEACRPYVQRFCSSSATKNEV
VACLSEVMRNDTIKAQRHQIPKECRHQVKAQLYQQRESIQLDPKLANACK
RELEQFCEEEKGPGQALECLIRKTHSLGKPCHHAIFMVKKSELGDSGTDY
TLLTTCKEMIYKFCPSTDSSKLLDCLKTYKDDTQFDQRCHLVVVNRMIEQ
NTDFRFNPSLQSACGKNIDRYCSNIVASALPNEELNGKVIHCLKDKFRQS
ALDEPCAKEMIKILQEQALNYKLNPLLQVFCKSEIQELCKANVDSDEHGQ
LAECLKTAFLQKQIINRQCQMEVATLIAEAKADIHVDPILETACTVDLLR
YCSKVAAGNGRKLNCLRTLLKDTPNSLEADCREKLQRRIEMFRNADDTLA
LPPEDVQQLVQQVVASPARKFFLVILMSATGLVFLTGIFLGRATKRAMGL
KNK*
BS29976.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Glg1-PA | 1103 | CG33214-PA | 1..1103 | 1..1103 | 5835 | 100 | Plus |
| Glg1-PB | 1107 | CG33214-PB | 1..1107 | 1..1103 | 5820 | 99.6 | Plus |
