BS29980.complete Sequence
3695 bp assembled on 2012-06-18
GenBank Submission: KX803986
> BS29980.complete
GAAGTTATCAGTCGACATGAACCCATCCGAGCTGCGCATGATGTGGATGA
GTAGTCAGTACAACTCGGAGCGCATTACACTGGAGGATGCGGCCACTCTG
CTGGGTCATCCCACTGTTGGACTCTCTGTCATGGAGGACCTCTCCGCCCA
TCAGCCAACTTTGGACATGAATCCGATGATGAGCCTAATGGGGGGAGATT
TCACTGGTCAAGCGGCGGCGACTGCTGCGGCACTGGGTGTACAGCCGGGC
ACCCTGATTGCCACCAACTCGAACAACCTGTACGGATTTGCCCACATGGG
CGGCCTGCAGCAGCAACTGCTCCAGCAGTCGGCGGCGGCGGCAGTCTTCC
AGAACTATGCGGAGGCAATGGATAACGATGTGGAGAACGGCATGGTTGGC
ATGGCCATGGAGGCGGTCGTGGACGATGACGACCAAGTGTACGGTCAGAG
GGACAATAACTTTGATGATAATGGATCCGAGTTGGAGCCCAAGCAAGAGA
TTATCAACATCGACGACTTTGTGATGATGAACGAGGACAATAATTCGTAC
GATGGCACCGACTTTATGACCTCCTCCGATAAGGACATTTCGCAGTCCTC
CTCCTCCTGCATGGCACAGATGCCCGGAAGCTTGGGCGTCCCTGGAGTCG
AGCACGATCTTTTGGTTCCACTGCCCGATGGCCTGCTGCACCACAAGCTG
CTGGGCACAACTCTGGTCCCTGCGATGGGTACGCTAAATGGCAATGCCTT
TGGCAACATAATGGTCAGCACTGAAAACACATCCAGCAAGCAAATGCAGC
GCACCTATAGTACGGCCAAGGGAGCCAATTCCACCGCAACCACCGCCACC
TGCAGTGCCTCCACGTCCTCCGCATTGCGATCACAGCGCAAGACGCGCAA
GATCGAGCCCGTTAACAGGCCAGGACTGGTGCTGAAGACACCCATCGCCT
ACAGGGGCAACATTGACCCTTCGGTGATCCCCATACAGAAAGATGGCATG
GCTGTCTGTAAACGTTGTGGCGCCATTGGAGTGAAGCACACATTCTACAC
AAAATCGCGACGTTTTTGCAGCATGGCCTGTGCCCGAGGCGAACTATATT
CGTTGGTACTTAACACTAAGATGGAGGGAGACCAGGCAACCACTAGTTCC
CCGGATCCTGGAGCGGGTTCGGAGTCAGCCGATTTGCCTGGCGATCAGCA
ACAGTCGCAGTCGGATATTGAGCTCGATCTGCATGCGGCGCACATTAAGA
ATGCGAATTATCGTTTTCGCATTACGGATCAATCAAAGATTACCCAGTTG
AATAGCTTCGGCGAACCCATGTCAATGGGCGGCGACGCAGCTGCCAATAA
TGTACAAATGGCAGCAGATGAAACAATTGCTGCGTTAAACGGCGGAGCAG
TGGGCGATGCCACTGCTCCGGGCAGCACCGAGGAGGGTGCATCCACACCC
AATTCTTATCTGAGCGCAGCACCCACGCCCAAGGCCTTGCGACTTTTTAA
GGACATCTACCCACAGGATGACCTGCCGCAAATACCCAAATACGAGCGCC
TTCCCGTACCGTGTCCGCAAATGGAGAAGATAATCAGCATTCGGCGGCGC
ATGTATGATCCCACACACTCCTACGACTGGTTGCCCCGCCTTAGCAAGGA
GAACTTCAATGCGGCACCCGTCACTTGTTTTCCTCATGCACCCGGTTGCG
AGGTATGGGACAATTTGGGCGTGGGCATGAAGGTTGAAGTGGAAAATACG
GATTGCGATAGCATCGAAGTGATCCAACCGGGTCAGACTCCTACCTCGTT
TTGGGTGGCCACCATCCTGGAAATCAAAGGCTATAAGGCCTTAATGAGCT
ACGAGGGTTTCGATACGGACTCGCACGACTTCTGGGTGAACCTCTGCAAT
GCCGAGGTGCATTCGGTGGGTTGGTGCGCCACTCGGGGCAAGCCATTAAT
TCCGCCCCGCACCATCGAGCACAAGTACAAGGACTGGAAGGACTTTCTGG
TGGGACGTTTATCCGGAGCCCGCACCCTTCCCTCCAACTTTTACAACAAA
ATCAACGACAGCCTCCAGTCGCGCTTCCGCCTTGGCCTGAATCTCGAGTG
CGTGGACAAGGATCGCATTTCGCAGGTGCGCCTGGCCACCGTCACCAAAA
TCGTGGGAAAGCGCCTCTTCCTGCGCTACTTCGATTCCGACGACGGCTTT
TGGTGTCACGAGGACTCGCCCATCATCCATCCAGTTGGCTGGGCAACCAC
AGTAGGCCATAATCTGGCTGCACCGCAGGACTATCTGGAGCGCATGTTAG
CTGGTCGCGAAGCCATGATTGAGGTTCATGAGGACGATGCCACAATCGAG
TTGTTTAAGATGAACTTCACCTTCGACGAATACTACAGTGACGGCAAAAC
CAATAGCTTTGTGGAGGGCATGAAGCTGGAAGCGGTGGATCCACTCAACC
TTTCATCCATATGCCCGGCTACAGTAATGGCGGTTCTTAAGTTCGGATAC
ATGATGATACGCATTGATTCCTACCAACCGGATGCCTCAGGGTCGGATTG
GTTCTGTTACCATGAAAAGAGTCCGTGTATCTTTCCGGCTGGATTCTGTT
CCGTCAACAACATTTCGGTTACCCCACCGAACGGCTACGACTCTCGTACA
TTCACCTGGGAGGGTTACCTCCGCGACACGGGAGCCGTAGCCGCTGGCCA
GCATCTATTTCATCGGATTATTCCCGATCATGGATTTGAGGTGGGTATGA
GTCTGGAGTGTGCAGATCTCATGGATCCCCGACTCGTTTGCGTGGCCACG
GTGGCGCGAGTGGTTGGTCGACTACTCAAGGTTCACTTTGACGGATGGAC
GGATGAGTACGACCAGTGGTTGGATTGCGAATCAGCCGATATATATCCAG
TCGGATGGTGTGTACTGGTCAACCATAAGCTAGAGGGCCCACCGAGAGTA
GCACATCAGCAGGCCCCGAAACCGGCACCAAAGCCCAAAATACAGCGAAA
GCGAAAGCCCAAAAAGGGAGCAGCGGGAGGCAAAACTCCAACCGATAATA
ATACTCAGTCGGTCAAATCGCGTACAATTGCGCTCAAGACCACGCCGCAC
TTACCCAAGCTGAGCATCAAGCTGGAGCTAAAGCCGGAGCATCACAATGC
TGCCTTTTACGAGAACAATCAGCCCGAGGAGGAAGGCGACGAGGAGGATC
CCGATGCGGATGGCGATGGAGACGGAAGCACCAGCCACATCTCCGAGCAG
TCAACGACACAGTCGTCCAGTGATCTGATCGCTGGATCGGGCAGTGGAAG
TGGGTCCGCCTCGCTGGTAACTCTCGCCACGGGCAGTAACAAAACGAACT
CCTCTGCGACGAATAATAAGTACATTCCGCGTCTGGCCGACATCGATTCG
AGTGAACCTCACTTGGAGCTGGTGCCGGATACATGGAACGTGTACGACGT
ATCCCAGTTCTTGCGGGTGAACGATTGCACAGCCCACTGTGACACGTTCA
GCCGGAACAAGATCGACGGAAAGCGACTCCTGCAGCTGACCAAGGACGAT
ATCATGCCACTGTTGGGCATGAAGGTGGGCCCAGCACTGAAAATTTCCGA
CCTTATTGCACAGCTTAAGTGCAAGGTTAATCCGGGCAGAGCCAGATCCC
ACAAGACCAACAAATCACCGTTTTTATAGAAGCTTTCTAGACCAT
BS29980.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfmbt-RD | 3663 | CG16975-PD | 1..3663 | 17..3679 | 18315 | 100 | Plus |
| Sfmbt-RB | 3663 | CG16975-PB | 1..3663 | 17..3679 | 18315 | 100 | Plus |
| Sfmbt-RC | 3732 | CG16975-PC | 1..3330 | 17..3346 | 16650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfmbt-RD | 4765 | CG16975-RD | 300..3962 | 17..3679 | 18315 | 100 | Plus |
| Sfmbt-RB | 4777 | CG16975-RB | 312..3974 | 17..3679 | 18315 | 100 | Plus |
| Sfmbt-RC | 4846 | CG16975-RC | 312..3641 | 17..3346 | 16650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13172643..13173942 | 2300..1001 | 6500 | 100 | Minus |
| 2L | 23513712 | 2L | 13174439..13175277 | 1001..163 | 4195 | 100 | Minus |
| 2L | 23513712 | 2L | 13171739..13172251 | 3062..2550 | 2565 | 100 | Minus |
| 2L | 23513712 | 2L | 13170452..13170785 | 3679..3346 | 1670 | 100 | Minus |
| 2L | 23513712 | 2L | 13171382..13171666 | 3346..3062 | 1425 | 100 | Minus |
| 2L | 23513712 | 2L | 13172314..13172567 | 2552..2299 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 13175666..13175813 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:37:47 has no hits.
BS29980.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:40 Download gff for
BS29980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RB | 310..3972 | 17..3679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:37 Download gff for
BS29980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RB | 312..3974 | 17..3679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:03 Download gff for
BS29980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sfmbt-RB | 312..3974 | 17..3679 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:03 Download gff for
BS29980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13170452..13170784 | 3347..3679 | 100 | <- | Minus |
| 2L | 13171382..13171665 | 3063..3346 | 100 | <- | Minus |
| 2L | 13171739..13172250 | 2551..3062 | 100 | <- | Minus |
| 2L | 13172316..13172565 | 2301..2550 | 100 | <- | Minus |
| 2L | 13172643..13173941 | 1002..2300 | 100 | <- | Minus |
| 2L | 13174439..13175276 | 164..1001 | 100 | <- | Minus |
| 2L | 13175667..13175813 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:37 Download gff for
BS29980.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13170452..13170784 | 3347..3679 | 100 | <- | Minus |
| arm_2L | 13171382..13171665 | 3063..3346 | 100 | <- | Minus |
| arm_2L | 13171739..13172250 | 2551..3062 | 100 | <- | Minus |
| arm_2L | 13172316..13172565 | 2301..2550 | 100 | <- | Minus |
| arm_2L | 13172643..13173941 | 1002..2300 | 100 | <- | Minus |
| arm_2L | 13174439..13175276 | 164..1001 | 100 | <- | Minus |
| arm_2L | 13175667..13175813 | 17..163 | 100 | | Minus |
BS29980.pep Sequence
Translation from 16 to 3678
> BS29980.pep
MNPSELRMMWMSSQYNSERITLEDAATLLGHPTVGLSVMEDLSAHQPTLD
MNPMMSLMGGDFTGQAAATAAALGVQPGTLIATNSNNLYGFAHMGGLQQQ
LLQQSAAAAVFQNYAEAMDNDVENGMVGMAMEAVVDDDDQVYGQRDNNFD
DNGSELEPKQEIINIDDFVMMNEDNNSYDGTDFMTSSDKDISQSSSSCMA
QMPGSLGVPGVEHDLLVPLPDGLLHHKLLGTTLVPAMGTLNGNAFGNIMV
STENTSSKQMQRTYSTAKGANSTATTATCSASTSSALRSQRKTRKIEPVN
RPGLVLKTPIAYRGNIDPSVIPIQKDGMAVCKRCGAIGVKHTFYTKSRRF
CSMACARGELYSLVLNTKMEGDQATTSSPDPGAGSESADLPGDQQQSQSD
IELDLHAAHIKNANYRFRITDQSKITQLNSFGEPMSMGGDAAANNVQMAA
DETIAALNGGAVGDATAPGSTEEGASTPNSYLSAAPTPKALRLFKDIYPQ
DDLPQIPKYERLPVPCPQMEKIISIRRRMYDPTHSYDWLPRLSKENFNAA
PVTCFPHAPGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATI
LEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTI
EHKYKDWKDFLVGRLSGARTLPSNFYNKINDSLQSRFRLGLNLECVDKDR
ISQVRLATVTKIVGKRLFLRYFDSDDGFWCHEDSPIIHPVGWATTVGHNL
AAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSFVE
GMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHE
KSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHR
IIPDHGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQ
WLDCESADIYPVGWCVLVNHKLEGPPRVAHQQAPKPAPKPKIQRKRKPKK
GAAGGKTPTDNNTQSVKSRTIALKTTPHLPKLSIKLELKPEHHNAAFYEN
NQPEEEGDEEDPDADGDGDGSTSHISEQSTTQSSSDLIAGSGSGSGSASL
VTLATGSNKTNSSATNNKYIPRLADIDSSEPHLELVPDTWNVYDVSQFLR
VNDCTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQL
KCKVNPGRARSHKTNKSPFL*
BS29980.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sfmbt-PD | 1220 | CG16975-PD | 1..1220 | 1..1220 | 6465 | 100 | Plus |
| Sfmbt-PB | 1220 | CG16975-PB | 1..1220 | 1..1220 | 6465 | 100 | Plus |
| Sfmbt-PC | 1243 | CG16975-PC | 1..1243 | 1..1220 | 6431 | 98.1 | Plus |
| Sfmbt-PA | 868 | CG16975-PA | 1..868 | 353..1220 | 4649 | 100 | Plus |
| l(3)mbt-PB | 1477 | CG5954-PB | 850..1141 | 687..986 | 340 | 30.8 | Plus |
