BS29988.complete Sequence
1937 bp assembled on 2012-07-30
GenBank Submission: KX806482
> BS29988.complete
GAAGTTATCAGTCGACATGTCGGATATTCTCGCAGAAACACAAGCCGCGA
ACAGAGATTCAACAATTTGGCACCAATGGTGTCGCCTGTGCTCCAAGGAG
CATCCGACAAATCAAAATGTATTCTTCAGGGAGGCGAAACAAAACTCCTG
GGCGAGCACAATGGCCATGACCATTGGCAAGTACTTTTGGGTCGATATCA
AAAGGGAGGACGAGCTGAGCAATTTTCTGTGCTCCGAATGCTTCACATTG
ATGGACTGCCTCATCGAGTTTTCGGAGAGGGTTCGCAAAGTGCAGATCCT
TTTCAGCAAATTGCAGTTGTTACAGTCTAATAATTTGATGGATTATGAGA
AAATTCGAGAGGACTGCGGTGTGGCAACCGATGGATGGAAGCATATAATG
CTCGGAGCCGTAGACGAAAGTCTTCCCCAGAATGACGAAGTATTCATCAG
CGAGGAACAACCAATAGTCTGCCAAACAGAAACATCCAGTAAAATGAAAA
GTGAAATCCTAATGATACCAAATTTTTTGGTGGAAAAACAATGTCTTCAG
GAAAAACAAGACTTTCCTAAAGAGGAAGATGTTATTGAAGAAGAAATGCA
AATTTCTGGGGTGGAAGAGGAAATCCTAGAAGAAGATGTGGAAGAAGATC
TTGCCGAGGAAGAGGTTGAAACTGTGGAGGAAGAGATTGACACTGTGGGA
GAAGAGGTTGAAGCTGTGGAGGAAGAGTTGGAAACCCAAGACGCTACAGA
TTGCTTAGTGGAGGAAGTGGAGCACATGACAGAGGATCGCTATATCGAGG
AGTCGCAGATTATAGAAGAAAGCCAAGTTTCAGATTTCAACATGGAAACA
TATGAAATAGTACAACACAATCCGCAAAAAGAACCCGTAGAAACAAAAGA
CACCGTGGAATCTATAGAATCAAACGAGGATACCCAGGAAGATATCTCCC
GAGAGCATGTAACCGATGAGGAGGATGAAATATCAGAGGTACCAGCCATG
TATAAGTGCAATATTTGCAAAAAGCCGTATAAGAAACCCAAAGCCTACAA
GCGTCACATGGAGGAGGTTCACAACACTGTGGCCGATGATCTGCCACAGT
TGGAGTGCAATCAGTGCAAACTATGTTTTCCAACAGTCGCCCAACTGCAT
GCCCACCACCGAACCCATGTACGTGCCAAACCAAAGACAGATAACTGCTG
TCCACACTGCGAAAAGCGCTTCACCACCTCGGGAACACTGAAGCGACACA
TAGAAGGCATCCACAACCAAATAAAGCCCTATGTGTGCGACCTCTGTGGC
AAAAGCTTCAATTACATTACTGGACTGAAGGATCACAAACTTGTGCACAC
AGATGAGTGCCCCTTCGAGTGTCCCGTGTGCAAGCGAGGCTTTAAAAACA
ATGCGAGGTTAAAGATCCATTTAGATACACACAGTGCCGAAATCTACGAG
TGCACTGTATGTGGCTTGAAGTTAAAAACCCGACGCACATTCAACAAACA
CAAATTGGTGCATTCAGATACACGGCAATTTAAGTGTGAAGTCTGCGGAT
CGGCGTTCAAGCGAAGTAAGACACTGAAGGCACATCTCATCCTTCACACC
GGCATCCGGCCATATAAGTGCAATTTTTGCGGAAGAGACTTCGCCAATGG
CTCCAACTGTCGATCGCACAAACGGCAGGCACACCCCAAGGAACTGGCCG
AAGAGGAAGCTCGCGGAGTGACACGATCCACACTTCTTCCAATGCTGGAC
GAACTGACAATTGCGTCCAAGCTTTTAAAAACACCCGCAGGTCCTTGCAA
AGTAAAGGGTAGTAGGCCAAAAGCTGCGCCCAAAGATCAAGATAATGGCA
ATGAATCTCCAACGAAGGACACCGATGGTGCCATCCTCTACGAGCTGGTC
GAGGAGCTTGATTACTCCTAAAAGCTTTCTAGACCAT
BS29988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6254-RA | 1905 | CG6254-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6254-RA | 2006 | CG6254-RA | 71..1975 | 17..1921 | 9525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10159809..10161026 | 1414..197 | 6090 | 100 | Minus |
| 3R | 32079331 | 3R | 10159394..10159747 | 1766..1413 | 1770 | 100 | Minus |
| 3R | 32079331 | 3R | 10161082..10161261 | 196..17 | 900 | 100 | Minus |
| 3R | 32079331 | 3R | 10159175..10159331 | 1921..1765 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:56:01 has no hits.
BS29988.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-30 10:23:09 Download gff for
BS29988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 68..1970 | 17..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:18 Download gff for
BS29988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1973 | 17..1919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:50 Download gff for
BS29988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6254-RA | 71..1973 | 17..1919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:50 Download gff for
BS29988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10159177..10159331 | 1765..1919 | 100 | <- | Minus |
| 3R | 10159396..10159745 | 1415..1764 | 100 | <- | Minus |
| 3R | 10159809..10161026 | 197..1414 | 100 | <- | Minus |
| 3R | 10161082..10161261 | 17..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:18 Download gff for
BS29988.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5984899..5985053 | 1765..1919 | 100 | <- | Minus |
| arm_3R | 5985118..5985467 | 1415..1764 | 100 | <- | Minus |
| arm_3R | 5985531..5986748 | 197..1414 | 100 | <- | Minus |
| arm_3R | 5986804..5986983 | 17..196 | 100 | | Minus |
BS29988.pep Sequence
Translation from 16 to 1920
> BS29988.pep
MSDILAETQAANRDSTIWHQWCRLCSKEHPTNQNVFFREAKQNSWASTMA
MTIGKYFWVDIKREDELSNFLCSECFTLMDCLIEFSERVRKVQILFSKLQ
LLQSNNLMDYEKIREDCGVATDGWKHIMLGAVDESLPQNDEVFISEEQPI
VCQTETSSKMKSEILMIPNFLVEKQCLQEKQDFPKEEDVIEEEMQISGVE
EEILEEDVEEDLAEEEVETVEEEIDTVGEEVEAVEEELETQDATDCLVEE
VEHMTEDRYIEESQIIEESQVSDFNMETYEIVQHNPQKEPVETKDTVESI
ESNEDTQEDISREHVTDEEDEISEVPAMYKCNICKKPYKKPKAYKRHMEE
VHNTVADDLPQLECNQCKLCFPTVAQLHAHHRTHVRAKPKTDNCCPHCEK
RFTTSGTLKRHIEGIHNQIKPYVCDLCGKSFNYITGLKDHKLVHTDECPF
ECPVCKRGFKNNARLKIHLDTHSAEIYECTVCGLKLKTRRTFNKHKLVHS
DTRQFKCEVCGSAFKRSKTLKAHLILHTGIRPYKCNFCGRDFANGSNCRS
HKRQAHPKELAEEEARGVTRSTLLPMLDELTIASKLLKTPAGPCKVKGSR
PKAAPKDQDNGNESPTKDTDGAILYELVEELDYS*
BS29988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6254-PA | 634 | CG6254-PA | 1..634 | 1..634 | 3394 | 100 | Plus |
| CG17568-PA | 513 | CG17568-PA | 3..509 | 14..592 | 817 | 33.8 | Plus |
| CG10366-PA | 578 | CG10366-PA | 128..539 | 212..618 | 655 | 34.7 | Plus |
| wek-PB | 470 | CG4148-PB | 270..457 | 392..580 | 524 | 51.3 | Plus |
| wek-PA | 470 | CG4148-PA | 270..457 | 392..580 | 524 | 51.3 | Plus |
