BS29990.complete Sequence
1031 bp assembled on 2012-05-24
GenBank Submission: KX804762
> BS29990.complete
GAAGTTATCAGTCGACATGTTCAAGCTAGTTTTTAAGCAGTACAAGTGCA
AAAGTACCAGTCCTGATTTAACGGAAGTTGTTAAGATCGATGATTGTGTA
GTCAAGGGGAATGATCAAGAAAAGAGTGATAATAATATTGTTCAACGATT
AAGTATCAGCAATGTAGAAAGCCTACAGACAATGCCAGGCGTTAAATCGC
CAAAAGATTGGCGAACCTATACATTAACTAACCATCCCGGCATTATTGTG
ATTCGGAATCCATTCTCGGAACGAGGCCGGCGTTATTGGAGCGCCCGATG
TCTGCGGGATTTTCCGCGAACGCCAAATATAGTCAATTTAAATGAAAGGC
TCTTCGATGAATCCGTCAGGTCGGACTGGTGGAAACAGCTTAATCTGTGC
AGCGATGGCGTTGAGTTCCAACGTATAAAATCCGCGATGCGTTGGACGAC
ATTTGGATATCATCACAACTGGGACACGAAGATCTATGATGAGGAGATGC
AGTCGCCGTTTCCCGAAGATTTGAGCAGTCTATGCGGATTGTTTGCGCAA
GCGTTGGGATACGCGGATTTTAAGCCAGAAGCCGCAATTGTAAATTACTA
TCCAGTTGGTAGTACGTTATCGGGTCACACAGATCACTCTGAACCAAACA
AATCGGCCCCTTTGTTTTCTTTTAGTTTTGGTCAGACTGCAATATTTCTA
ATTGGTGGAAGATCTTTAGAAGAAAAGCCAACCGCTATCTACCTTCAATC
CGGGGACGTTATGATAATGTCCGGAGAATCGCGTCTATGCTATCACGCAG
TTCCTCGTATCATCAAAACTCAGGCTTCCGCGACTTTATCACTGATAATT
GAAGATGTCGATAATGCAGATATTAAAACGCGTACAATTGATAAAGATTT
ATTTCATGATGTTGGCAACCCTCAATTTTGGGAGCCTTTTTCGAGATATA
TGGACGATTCACGTATTAATATTAATATACGTCAAGTTTTAAATCCAGGA
GATGTTAAGCTTTAAAAGCTTTCTAGACCAT
BS29990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AlkB-RA | 999 | CG33250-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AlkB-RA | 1133 | CG33250-RA | 70..1069 | 16..1015 | 5000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15858600..15859141 | 675..134 | 2710 | 100 | Minus |
| X | 23542271 | X | 15858198..15858539 | 1015..674 | 1710 | 100 | Minus |
| X | 23542271 | X | 15859193..15859310 | 133..16 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:27:43 has no hits.
BS29990.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:56:59 Download gff for
BS29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 184..1175 | 22..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:50 Download gff for
BS29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 76..1067 | 22..1013 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:52 Download gff for
BS29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AlkB-RA | 76..1067 | 22..1013 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:52 Download gff for
BS29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15858200..15858537 | 676..1013 | 100 | <- | Minus |
| X | 15858600..15859141 | 134..675 | 100 | <- | Minus |
| X | 15859193..15859304 | 22..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:50 Download gff for
BS29990.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15752233..15752570 | 676..1013 | 100 | <- | Minus |
| arm_X | 15752633..15753174 | 134..675 | 100 | <- | Minus |
| arm_X | 15753226..15753337 | 22..133 | 100 | | Minus |
BS29990.pep Sequence
Translation from 16 to 1014
> BS29990.pep
MFKLVFKQYKCKSTSPDLTEVVKIDDCVVKGNDQEKSDNNIVQRLSISNV
ESLQTMPGVKSPKDWRTYTLTNHPGIIVIRNPFSERGRRYWSARCLRDFP
RTPNIVNLNERLFDESVRSDWWKQLNLCSDGVEFQRIKSAMRWTTFGYHH
NWDTKIYDEEMQSPFPEDLSSLCGLFAQALGYADFKPEAAIVNYYPVGST
LSGHTDHSEPNKSAPLFSFSFGQTAIFLIGGRSLEEKPTAIYLQSGDVMI
MSGESRLCYHAVPRIIKTQASATLSLIIEDVDNADIKTRTIDKDLFHDVG
NPQFWEPFSRYMDDSRININIRQVLNPGDVKL*
BS29990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AlkB-PA | 332 | CG33250-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
