BS29993.complete Sequence
998 bp assembled on 2012-05-24
GenBank Submission: KX802547
> BS29993.complete
GAAGTTATCAGTCGACATGTTCCACTCACTTGTTTTGATGGCCTGCGCCC
TTGCCGCCCTCTCCGTCGCCCAGGGGGCGGGGTCCGCTCGATCCAAATCG
CTGCCGTTATCGCTATCGCTATCGGTATCGGTATCCTCGTCATTGGCATC
GGCATCCAGTCCAGGAGCTGCTGCTGACCCAACAGCCGCCTTCACCGTCA
CCGCGACCGCCCCCACCCCCGCAAGTGCTCCCTTTGCCGGCAAACAGCTA
AACAGATGCCGTCAAAGTTGCTATCAGCAGCTTTCCAAGGACTGGCATTA
TTGTAAGGATTCCGTTGATTGCACAAACTGCTGCCAAAAGCTGGTGGCAC
CATTCGAGTTGCGTATCCTGAAGGCCCAGCGCCAGGAGTCGCTCGTCCTA
ACGGACATCGGCTGGGATGAGATGATAGCGAATGCCTCGCGCCAGTGCCT
CATCACCTGGGAAGTGTCCGGCGGCGGGCTCATCGGCAATCTGCTAACGG
ACACCGCACGGGCGGAACTCTCCTTGTGGCCGGACACCGTCTACAACATC
CAGGTCAAGTGCAAGCACAAGCTCACGGGTCTGATGCGACGTTCGATCAA
GCTAAATGTGGACACCAGCCAGTTGGTGGGCACAACAACGACCACGACGA
CCAGTAAATCGAGTATCCAGCGGCAGCATTTGGAGCAGCCAGTGGATCAT
ACTGATGCCTTGGAGCACTCGCAGCACATTCGCATCCCGCGGCCCACGGA
TCGTGTGTATATAATCAGTGCACTGCCCACGCCCAGCGAACTGGGCGGTG
TGGTTTATCCGGCCTTCGGGGCGCTGGCCTTCTTCCTGGCCCTGCTGGTC
ATGTTCCTCTTCCTGCGTCCGCAGCGCAAGCGATTCCCTCTGGATGCGGA
CAGTGCGGACACGGCAACGTTGATAGGTCGCAGTTCGAGCAGCTCGAGGA
ACTCAATGGACGCCTCTACGCTGCATGTCTAAAAGCTTTCTAGACCAT
BS29993.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fend-RC | 966 | CG12664-PC | 1..966 | 17..982 | 4830 | 100 | Plus |
| fend-RB | 966 | CG12664-PB | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fend-RC | 5133 | CG12664-RC | 895..1862 | 15..982 | 4840 | 100 | Plus |
| fend-RB | 3566 | CG12664-RB | 836..1803 | 15..982 | 4840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9125244..9125656 | 982..570 | 2065 | 100 | Minus |
| X | 23542271 | X | 9133940..9134205 | 280..15 | 1330 | 100 | Minus |
| X | 23542271 | X | 9126060..9126302 | 571..329 | 1215 | 100 | Minus |
| X | 23542271 | X | 9127066..9127117 | 328..277 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:27:46 has no hits.
BS29993.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:57:00 Download gff for
BS29993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 821..1779 | 22..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:52 Download gff for
BS29993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 843..1801 | 22..980 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:54 Download gff for
BS29993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fend-RB | 843..1801 | 22..980 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:54 Download gff for
BS29993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9125246..9125654 | 572..980 | 100 | <- | Minus |
| X | 9126060..9126302 | 329..571 | 100 | <- | Minus |
| X | 9127066..9127113 | 281..328 | 100 | <- | Minus |
| X | 9133940..9134198 | 22..280 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:52 Download gff for
BS29993.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9019279..9019687 | 572..980 | 100 | <- | Minus |
| arm_X | 9020093..9020335 | 329..571 | 100 | <- | Minus |
| arm_X | 9021099..9021146 | 281..328 | 100 | <- | Minus |
| arm_X | 9027973..9028231 | 22..280 | 100 | | Minus |
BS29993.pep Sequence
Translation from 16 to 981
> BS29993.pep
MFHSLVLMACALAALSVAQGAGSARSKSLPLSLSLSVSVSSSLASASSPG
AAADPTAAFTVTATAPTPASAPFAGKQLNRCRQSCYQQLSKDWHYCKDSV
DCTNCCQKLVAPFELRILKAQRQESLVLTDIGWDEMIANASRQCLITWEV
SGGGLIGNLLTDTARAELSLWPDTVYNIQVKCKHKLTGLMRRSIKLNVDT
SQLVGTTTTTTTSKSSIQRQHLEQPVDHTDALEHSQHIRIPRPTDRVYII
SALPTPSELGGVVYPAFGALAFFLALLVMFLFLRPQRKRFPLDADSADTA
TLIGRSSSSSRNSMDASTLHV*
BS29993.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fend-PC | 321 | CG12664-PC | 1..321 | 1..321 | 1634 | 100 | Plus |
| fend-PB | 321 | CG12664-PB | 1..321 | 1..321 | 1634 | 100 | Plus |
