BS30002.complete Sequence
1844 bp assembled on 2012-06-18
GenBank Submission: KX801874
> BS30002.complete
GAAGTTATCAGTCGACATGATTCCCTGCGTGAGTTTGGCCGAAACGAGCG
TCATTGGCAACATGAAGGAGCGGGTCAAGGAAATGAAGGTGTTCGGCTGC
CGACTCAACTTCTGGAACCACATTGGTCACAGCCTGACCAGTTCCAAAAC
CAAAGAAGGCAACGGCAGTTCTCCAGCCCAGAATTCAACGCGCAGCATCA
GTCCCAACAGCTCCACGACCAACAGTCAGTTTAGCTTGCAGCACAACAGC
TCGGGGAGTCTCGGCGGAGGAGTGGGCGGCGGATTGGGAGGCGGAGGCAG
CCTTGGCCTAGGCGGCGGAGGAGGAGGTGGCGGCAGTTGCACGCCCACAT
CGCTACAGCCTCAGTCCTCGCTGACAACTTTCAAGCAGTCCCCAACTCTA
TTGAACGGCAACGGAACTCTATTGGATGCCAATATGCCTGGCGGTATACC
CACTCCCGGAACACCAAATTCCAAAGCCAAGGACAACTCCCACTTTGTCA
AGCTGGTGGTGGCTCTCTATCCATTCAAGGCCATCGAAGGCGGCGATTTA
TCGCTGGAAAAGAATGCCGAATACGAAGTGATAGATGACTCACAAGAGCA
CTGGTGGAAGGTCAAAGATGCCTTGGGGAATGTCGGCTATATACCCAGCA
ACTATGTCAAGCCGAAGGCTCTTCTGGGCCTGGAGCGCTATGAATGGTAT
GTGGGCGACATGTCACGACAGAGAGCCGAATCGCTGCTGAAGCAAGGTGA
TAAGGAGGGCTGCTTTGTGGTCAGGAAGTCATCGACCAAGGGTCTCTACA
CACTATCGCTGCATACCAAAGTTCCACAGTCGCATGTGAAGCACTACCAC
ATCAAGCAAAATGCTCGCTGCGAGTATTATTTGAGTGAGAAGCACTGCTG
TGAAACAATTCCGGATCTGATTAACTACCATCGCCACAACTCTGGGGGTT
TGGCTTGCCGACTCAAATCCTCGCCCTGCGATCGCCCAGTTCCACCGACG
GCGGGATTGTCCCACGACAAATGGGAGATCCATCCGATGGAACTGATGCT
GATGGAGGAGCTTGGATCGGGACAGTTTGGTGTTGTGCGGCGCGGCAAGT
GGCGTGGGTCTATCGACACAGCGGTCAAGATGATGAAGGAAGGAACCATG
TCCGAGGACGATTTCATTGAGGAGGCCAAGGTGATGACCAAGCTGCAGCA
TCCAAATCTTGTGCAGCTATATGGCGTCTGCTCCAAGCACCGGCCCATCT
ACATTGTGACCGAGTACATGAAGCACGGATCCTTGTTGAATTACTTGCGA
CGGCATGAGAAGACCCTGATTGGTAATATGGGTCTACTCCTTGACATGTG
CATACAGGTTAGCAAGGGAATGACCTACCTGGAGCGCCATAACTACATTC
ACCGGGATCTGGCTGCCCGCAACTGTCTCGTGGGTTCCGAGAATGTCGTT
AAAGTGGCCGACTTTGGATTGGCCCGATACGTTCTCGACGATCAGTATAC
CAGCTCTGGCGGAACCAAGTTCCCCATCAAGTGGGCCCCGCCCGAAGTGC
TCAACTACACGCGCTTCTCCTCTAAGAGCGATGTGTGGGCATACGGTGTG
CTGATGTGGGAGATCTTCACTTGCGGCAAGATGCCATACGGTCGCCTAAA
GAATACCGAGGTTGTGGAGCGTGTGCAGCGCGGAATTATCCTAGAAAAAC
CAAAGTCGTGTGCCAAGGAGATTTATGATGTCATGAAGTTGTGCTGGTCA
CATGGACCCGAGGAGCGTCCCGCTTTCCGTGTGCTCATGGATCAGCTGGC
TCTTGTGGCCCAAACGCTAACCGACTAAAAGCTTTCTAGACCAT
BS30002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Btk29A-RF | 1812 | CG8049-PF | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| Btk29A-RA | 1812 | CG8049-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| Btk29A-RC | 1812 | CG8049-PC | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Btk29A-RF | 4992 | CG8049-RF | 2148..3959 | 17..1828 | 9060 | 100 | Plus |
| Btk29A-RA | 4026 | CG8049-RA | 432..2243 | 17..1828 | 9060 | 100 | Plus |
| Btk29A-RC | 3279 | CG8049-RC | 435..2246 | 17..1828 | 9060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8260906..8261681 | 1598..823 | 3880 | 100 | Minus |
| 2L | 23513712 | 2L | 8262475..8262682 | 364..157 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 8271935..8272077 | 159..17 | 715 | 100 | Minus |
| 2L | 23513712 | 2L | 8260696..8260832 | 1731..1595 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 8261943..8262075 | 693..561 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 8261740..8261868 | 822..694 | 645 | 100 | Minus |
| 2L | 23513712 | 2L | 8262284..8262404 | 482..362 | 605 | 100 | Minus |
| 2L | 23513712 | 2L | 8260538..8260636 | 1828..1730 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 8262139..8262221 | 562..480 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:38:05 has no hits.
BS30002.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:43 Download gff for
BS30002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RF | 2211..4020 | 17..1826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:44 Download gff for
BS30002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RC | 435..2244 | 17..1826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:07 Download gff for
BS30002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RC | 435..2244 | 17..1826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:07 Download gff for
BS30002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8271936..8272077 | 17..158 | 100 | | Minus |
| 2L | 8260540..8260636 | 1730..1826 | 100 | <- | Minus |
| 2L | 8260698..8260831 | 1596..1729 | 100 | <- | Minus |
| 2L | 8260909..8261681 | 823..1595 | 100 | <- | Minus |
| 2L | 8261740..8261868 | 694..822 | 100 | <- | Minus |
| 2L | 8261943..8262073 | 563..693 | 100 | <- | Minus |
| 2L | 8262139..8262219 | 482..562 | 100 | <- | Minus |
| 2L | 8262285..8262401 | 365..481 | 100 | <- | Minus |
| 2L | 8262475..8262680 | 159..364 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:44 Download gff for
BS30002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8271936..8272077 | 17..158 | 100 | | Minus |
| arm_2L | 8260540..8260636 | 1730..1826 | 100 | <- | Minus |
| arm_2L | 8260698..8260831 | 1596..1729 | 100 | <- | Minus |
| arm_2L | 8260909..8261681 | 823..1595 | 100 | <- | Minus |
| arm_2L | 8261740..8261868 | 694..822 | 100 | <- | Minus |
| arm_2L | 8261943..8262073 | 563..693 | 100 | <- | Minus |
| arm_2L | 8262139..8262219 | 482..562 | 100 | <- | Minus |
| arm_2L | 8262285..8262401 | 365..481 | 100 | <- | Minus |
| arm_2L | 8262475..8262680 | 159..364 | 100 | <- | Minus |
BS30002.pep Sequence
Translation from 16 to 1827
> BS30002.pep
MIPCVSLAETSVIGNMKERVKEMKVFGCRLNFWNHIGHSLTSSKTKEGNG
SSPAQNSTRSISPNSSTTNSQFSLQHNSSGSLGGGVGGGLGGGGSLGLGG
GGGGGGSCTPTSLQPQSSLTTFKQSPTLLNGNGTLLDANMPGGIPTPGTP
NSKAKDNSHFVKLVVALYPFKAIEGGDLSLEKNAEYEVIDDSQEHWWKVK
DALGNVGYIPSNYVKPKALLGLERYEWYVGDMSRQRAESLLKQGDKEGCF
VVRKSSTKGLYTLSLHTKVPQSHVKHYHIKQNARCEYYLSEKHCCETIPD
LINYHRHNSGGLACRLKSSPCDRPVPPTAGLSHDKWEIHPMELMLMEELG
SGQFGVVRRGKWRGSIDTAVKMMKEGTMSEDDFIEEAKVMTKLQHPNLVQ
LYGVCSKHRPIYIVTEYMKHGSLLNYLRRHEKTLIGNMGLLLDMCIQVSK
GMTYLERHNYIHRDLAARNCLVGSENVVKVADFGLARYVLDDQYTSSGGT
KFPIKWAPPEVLNYTRFSSKSDVWAYGVLMWEIFTCGKMPYGRLKNTEVV
ERVQRGIILEKPKSCAKEIYDVMKLCWSHGPEERPAFRVLMDQLALVAQT
LTD*
BS30002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Btk29A-PF | 603 | CG8049-PF | 1..603 | 1..603 | 3227 | 100 | Plus |
| Btk29A-PA | 603 | CG8049-PA | 1..603 | 1..603 | 3227 | 100 | Plus |
| Btk29A-PC | 603 | CG8049-PC | 1..603 | 1..603 | 3227 | 100 | Plus |
| Btk29A-PG | 565 | CG8049-PG | 5..565 | 43..603 | 2982 | 99.5 | Plus |
| Btk29A-PE | 786 | CG8049-PE | 215..786 | 26..603 | 2975 | 96.7 | Plus |
