BS30022.complete Sequence
1196 bp assembled on 2012-06-18
GenBank Submission: KX803232
> BS30022.complete
GAAGTTATCAGTCGACATGTCAGCATTTGAACTGAAAAATTTAAATGATT
GCTTGGAAAAGCATTTACCACCCGATGAACTAAAGGAGGTTAAGAGAATT
TTGTACGGCGTAGAAGAAGATCAAACGCTTGAGCTGCCCACAAGTGCGAA
AGATATTGCCGAACAGAATGGATTCGACATCAAGGGCTATCGCTTCACGG
CGCGAGAGGAGCAAACTCGCAAGCGCCGGATAGTCAGAGTTGGCGCCATC
CAAAACTCTATCGTAATCCCTACTACGGCGCCCATTGAAAAACAACGAGA
GGCCATCTGGAACAAAGTGAAGACTATGATCAAGGCGGCAGCGGAAGCCG
GATGCAACATTGTTTGCACCCAAGAAGCGTGGACCATGCCCTTTGCCTTC
TGCACTCGCGAGAAGTTTCCTTGGTGTGAGTTTGCCGAAGAAGCCGAAAA
CGGTCCCACAACCAAGATGCTCGCAGAGCTGGCCAAGGCTTACAACATGG
TTATCATCCACTCGATTCTGGAGCGAGATATGGAGCATGGCGAGACCATT
TGGAATACGGCAGTGGTCATCTCGAACAGTGGTCGCTACCTGGGCAAGCA
CCGCAAGAACCACATTCCCCGGGTGGGTGACTTCAATGAGTCCACCTACT
ACATGGAGGGGAACACCGGTCATCCGGTTTTCGAGACGGAGTTCGGCAAG
CTGGCTGTGAACATATGCTACGGGCGCCATCACCCACAGAACTGGATGAT
GTTCGGTCTGAATGGAGCCGAGATTGTCTTTAATCCCTCGGCTACGATCG
GCCGCCTATCGGAGCCATTGTGGAGCATTGAGGCACGTAACGCTGCCATC
GCCAATAGCTACTTTACGGTTCCGATTAATCGCGTGGGAACCGAGCAGTT
CCCGAACGAATACACATCTGGTGATGGCAACAAGGCGCATAAGGAGTTTG
GTCCCTTCTACGGATCTTCTTATGTCGCAGCTCCTGACGGCTCAAGGACA
CCGAGCTTATCGCGGGACAAAGACGGCTTGCTTGTCGTTGAACTCGATCT
GAACCTGTGTCGCCAGGTGAAGGACTTCTGGGGCTTCCGCATGACGCAGA
GAGTTCCGCTGTATGCGGAGTCCTTCAAAAAGGCATCCGAACATGGCTTC
AAGCCGCAGATCATCAAGGAAACATAAAAGCTTTCTAGACCATTCG
BS30022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd3-RA | 1161 | CG3027-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd3-RA | 1361 | CG3027-RA | 94..1254 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7748254..7748873 | 1003..384 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 7748950..7749212 | 383..121 | 1315 | 100 | Minus |
| 3R | 32079331 | 3R | 7748020..7748194 | 1177..1003 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 7749883..7749986 | 120..17 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:38:12 has no hits.
BS30022.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 15:34:44 Download gff for
BS30022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 91..1243 | 17..1169 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:47 Download gff for
BS30022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1246 | 17..1169 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:08 Download gff for
BS30022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd3-RA | 94..1246 | 17..1169 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:08 Download gff for
BS30022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7748028..7748193 | 1004..1169 | 100 | <- | Minus |
| 3R | 7748254..7748873 | 384..1003 | 100 | <- | Minus |
| 3R | 7748950..7749212 | 121..383 | 100 | <- | Minus |
| 3R | 7749883..7749986 | 17..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:47 Download gff for
BS30022.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3573750..3573915 | 1004..1169 | 100 | <- | Minus |
| arm_3R | 3573976..3574595 | 384..1003 | 100 | <- | Minus |
| arm_3R | 3574672..3574934 | 121..383 | 100 | <- | Minus |
| arm_3R | 3575605..3575708 | 17..120 | 100 | | Minus |
BS30022.pep Sequence
Translation from 16 to 1176
> BS30022.pep
MSAFELKNLNDCLEKHLPPDELKEVKRILYGVEEDQTLELPTSAKDIAEQ
NGFDIKGYRFTAREEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNK
VKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTK
MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHI
PRVGDFNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNG
AEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYT
SGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQ
VKDFWGFRMTQRVPLYAESFKKASEHGFKPQIIKET*
BS30022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd3-PA | 386 | CG3027-PA | 1..386 | 1..386 | 2057 | 100 | Plus |
