BS30023.complete Sequence
605 bp assembled on 2012-05-24
GenBank Submission: KX805778
> BS30023.complete
GAAGTTATCAGTCGACATGAACAAGGAGGAGGTGCCCACCATCCGTCTGA
TCAAGCTGGAAGAGGACATGGCCAAGTACAAGCCCGAATCGGACGATCTG
TCCGCCGAGACCATCGAGGCGTTCCTTAAGAAGTTCCTGGACGGCAAGCT
GAAGCAACACCTCCTTTCCCAGGAGCTGCCCGAGGATTGGGACAAGAACC
CCGTCAAGGTGCTGGTATCCAGCAACTTCGAGAGCGTTGCCCTGGACAAG
AGCAAGAGCGTGCTGGTTGAGTTCTACGCCCCATGGTGCGGACACTGCAA
GCAGCTGGCCCCCATCTACGACCAGCTGGCTGAGAAGTACAAGGACAATG
AGGATATTGTCATTGCCAAGATGGACTCCACTGCCAACGAGCTGGAGAGC
ATTAAGATCTCGTCCTTCCCCACAATCAAATACTTCCGCAAGGAGGACAA
CAAGGTCATCGACTTCAACCTGGACAGGACTCTCGATGATTTCGTCAAGT
TCCTCGATGCCAACGGTGAGGTGGCCGATTCCGAGCCCGTCGAGGAGACC
GAGGAGGAGGAGGAGGCGCCCAAGAAGGACGAGTTGTAAAAGCTTTCTAG
ACCAT
BS30023.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 1491 | CG6988-PE | 914..1491 | 12..589 | 2875 | 99.8 | Plus |
| Pdi-RA | 1491 | CG6988-PA | 914..1491 | 12..589 | 2875 | 99.8 | Plus |
| ERp60-RA | 1470 | CG8983-PA | 1155..1230 | 262..337 | 245 | 88.2 | Plus |
| Pdi-RE | 1491 | CG6988-PE | 138..179 | 259..300 | 195 | 97.6 | Plus |
| Pdi-RA | 1491 | CG6988-PA | 138..179 | 259..300 | 195 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:27:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-RE | 2328 | CG6988-RE | 1301..1879 | 12..590 | 2880 | 99.8 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 1053..1631 | 12..590 | 2880 | 99.8 | Plus |
| ERp60-RA | 1807 | CG8983-RA | 1315..1390 | 262..337 | 245 | 88.2 | Plus |
| Pdi-RE | 2328 | CG6988-RE | 525..566 | 259..300 | 195 | 97.6 | Plus |
| Pdi-RA | 2080 | CG6988-RA | 277..318 | 259..300 | 195 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15138187..15138765 | 590..12 | 2880 | 99.8 | Minus |
| 2R | 25286936 | 2R | 11887985..11888060 | 337..262 | 245 | 88.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:27:54 has no hits.
BS30023.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:57:01 Download gff for
BS30023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RD | 916..1486 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:56 Download gff for
BS30023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 1058..1628 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:43:58 Download gff for
BS30023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdi-RA | 1058..1628 | 17..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:43:58 Download gff for
BS30023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15138190..15138760 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:56 Download gff for
BS30023.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15131290..15131860 | 17..587 | 100 | | Minus |
BS30023.pep Sequence
Translation from 16 to 588
> BS30023.pep
MNKEEVPTIRLIKLEEDMAKYKPESDDLSAETIEAFLKKFLDGKLKQHLL
SQELPEDWDKNPVKVLVSSNFESVALDKSKSVLVEFYAPWCGHCKQLAPI
YDQLAEKYKDNEDIVIAKMDSTANELESIKISSFPTIKYFRKEDNKVIDF
NLDRTLDDFVKFLDANGEVADSEPVEETEEEEEAPKKDEL*
BS30023.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdi-PE | 496 | CG6988-PE | 307..496 | 1..190 | 977 | 100 | Plus |
| Pdi-PA | 496 | CG6988-PA | 307..496 | 1..190 | 977 | 100 | Plus |
| ERp60-PA | 489 | CG8983-PA | 330..467 | 26..163 | 323 | 43.6 | Plus |
| CG9302-PA | 510 | CG9302-PA | 276..397 | 66..187 | 179 | 37.3 | Plus |
| Pdi-PE | 496 | CG6988-PE | 29..109 | 63..141 | 166 | 46.3 | Plus |
| Pdi-PA | 496 | CG6988-PA | 29..109 | 63..141 | 166 | 46.3 | Plus |
| prtp-PC | 416 | CG1837-PC | 55..159 | 81..182 | 166 | 30.5 | Plus |
| CG9302-PA | 510 | CG9302-PA | 391..506 | 56..171 | 165 | 35.6 | Plus |
| ERp60-PA | 489 | CG8983-PA | 33..128 | 73..165 | 163 | 39.2 | Plus |
