BS30033.complete Sequence
1607 bp assembled on 2012-06-19
GenBank Submission: KX803595
> BS30033.complete
GAAGTTATCAGTCGACATGGAGTGGTCGCTCATCATATCGATTCTGCTCA
ACTGCCTCTACGCCAGCGCCTCCGCGCTCGACGAGGATTGCCCCACCTTG
GACGATGGGGACAGTTTGTCGCAAACACAGCTGCTGGATCGCTTAACCCA
TGGCTGCCGCTACGATCGTTTGGAACGACCCATAACTTATTCGGAAACTG
GCCAGCGGCTACCGGTGGACGTCTATATGCGCGCCTACATCTACTTCATG
CAGAACCTGGAAGCACACGATCTACAGTTCAAGATCTATGCGCTCCTCCA
AATGCGATACCTCGATCCGCGTCTCAACTTTCGCAACGTAAGTCCCAAGC
GCAGGCAGCCGATTTTGGGCGAGGAGCACCTGAGAAACTCGCTCTGGATG
CCCCACATATTTCTAGCCAATGAGCGCGACTCCAGTATTTTGGGTCTCAC
GGAGAAGGACATCCTCACCTCGATATCGCCCGATGGCACAGTGATCGTTT
CGAATCGCATCAAGGCGACACTCTATTGCTGGCTCAACCTTAAGAAGTTC
CCATTCGATGAGCAGCACTGCTCGACGGTGCTGGAGAGTTGGATGTACAA
TACGTCGGAACTGGTCCTCCACTGGGAGCAGAAGCGTCCGATAACCTACG
ATGGGGCACTGCATCTCACCGAGTTTGTGCTGCAGCGTTCCTGGTCAAAC
GAGACGGTAATCAATGCCGATTTGAGTGACCTGCGTCATGGAGCCTTTGC
CGGCAACTACAGCTCCCTCAGCTTCACCGTTCACCTGACGCGAGTGGTTG
GCTTTTACCTGATGGACTACTTTCTACCCTCCATGCTGATTGTGGCCATA
TCCTGGGTATCGTTCTGGCTGCAAGCAGATCAGGCGCCGCCGCGCATCAC
GCTGGGCACCAGCACCCTGCTGACATTCATTACCCTGGCCTCGGCACAGG
GAAAGACTCTGCCAAAGGTTAGCTACATCAAGGTGTCAGAGGTGTGGTTC
CTGGGCTGCACCATCTTCATATTTGGCAGCATGGTGGAGTTCGCCTTTGT
TAACACGATTTGGCGTCGTAAGAAGAGTGTGCCCGTCAAGAAACTGAACA
GCAAACACATCCTGAAGTCAACTCTATCGCCGAATCTGCTCAGACGACGC
AGTCACGCCAGATCCAGATCCTTTTCGGGCACGGCTCTGCATAAGACAGC
GGATACCGGCTCGCTGGGCGGTGCCGGTTTCAACAATTACCTAACCGTCA
ATTTGCCCATCACCACGATTAAGGAGGGCCAAGTTCTGGATCAGCAGAGG
ACCAGCCGCGTCGTCCAGAAGATGGATGTTAACTTTGTGGAGAGTGCCTT
TGGATCCATGGGCTCTGCCCAGTCCACTGGAGCGATCAGTGCTGCCAGCA
GCAGCCAAACTTTGACCAACAATAACCGAACGGAGAGCGCGGGGCACCAG
GAGGAGATCGATCTGAGTGGCTGGACCACGCTAACGCCCCAGGAAATAGC
CATGTGGATTGATAGTCGAGCCAGATTCGTTTTTCCGCTCTCCTTTCTCG
TCTTTAATCTGTTTTTCTGGACATTTGTCTACTGTATTTAAAAGCTTTCT
AGACCAT
BS30033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-RA | 1575 | CG6927-PA | 1..1575 | 17..1591 | 7875 | 100 | Plus |
| CG7589-RB | 1530 | CG7589-PB | 733..1078 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RA | 1530 | CG7589-PA | 733..1078 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RB | 1530 | CG7589-PB | 368..602 | 366..600 | 260 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-RA | 1868 | CG6927-RA | 80..1656 | 17..1593 | 7885 | 100 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 1313..1658 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RA | 1950 | CG7589-RA | 1014..1359 | 731..1076 | 575 | 77.7 | Plus |
| CG7589-RB | 2249 | CG7589-RB | 948..1182 | 366..600 | 260 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4907459..4908609 | 443..1593 | 5755 | 100 | Plus |
| X | 23542271 | X | 4906979..4907407 | 17..445 | 2145 | 100 | Plus |
| 3R | 32079331 | 3R | 31303276..31303587 | 1063..752 | 435 | 76 | Minus |
| 3L | 28110227 | 3L | 17473694..17473862 | 908..1076 | 410 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:38:53 has no hits.
BS30033.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-19 09:16:10 Download gff for
BS30033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 68..1640 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:05 Download gff for
BS30033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1652 | 17..1589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:25 Download gff for
BS30033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6927-RA | 80..1652 | 17..1589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:25 Download gff for
BS30033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4906979..4907405 | 17..443 | 100 | -> | Plus |
| X | 4907460..4908605 | 444..1589 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:05 Download gff for
BS30033.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4801012..4801438 | 17..443 | 100 | -> | Plus |
| arm_X | 4801493..4802638 | 444..1589 | 100 | | Plus |
BS30033.pep Sequence
Translation from 16 to 1590
> BS30033.pep
MEWSLIISILLNCLYASASALDEDCPTLDDGDSLSQTQLLDRLTHGCRYD
RLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQMRYLD
PRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDIL
TSISPDGTVIVSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELV
LHWEQKRPITYDGALHLTEFVLQRSWSNETVINADLSDLRHGAFAGNYSS
LSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQAPPRITLGTST
LLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTIWR
RKKSVPVKKLNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSL
GGAGFNNYLTVNLPITTIKEGQVLDQQRTSRVVQKMDVNFVESAFGSMGS
AQSTGAISAASSSQTLTNNNRTESAGHQEEIDLSGWTTLTPQEIAMWIDS
RARFVFPLSFLVFNLFFWTFVYCI*
BS30033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6927-PA | 524 | CG6927-PA | 1..524 | 1..524 | 2730 | 100 | Plus |
| CG7589-PB | 509 | CG7589-PB | 11..509 | 3..524 | 1431 | 53.5 | Plus |
| CG7589-PA | 509 | CG7589-PA | 11..509 | 3..524 | 1431 | 53.5 | Plus |
| CG11340-PA | 526 | CG11340-PA | 60..526 | 24..524 | 1263 | 49.3 | Plus |
| GluClalpha-PO | 455 | CG7535-PO | 33..346 | 36..363 | 442 | 29.9 | Plus |
