BS30040.complete Sequence
1826 bp assembled on 2012-06-19
GenBank Submission: KX805840
> BS30040.complete
GAAGTTATCAGTCGACATGTTGCCGCATATAAGTGCCGACGAGGCACAGC
CGTCTATGTCGCGAAAGGTGTACATCAATCCGAATTTTCAGCTGCAAGGT
CAAACGGCGCATCAGCTGCCGTTCCAAGTGCCCTTCCAGGCGTTCCAGGC
GCCACTGCAGCCTCAGCCCGCGATCCATATCAATCCGCACTTTCTGAATC
GCCAGCGGGCCATGTACGACCAATACCAGCGGGAGCAGCAGGAGCAGCTT
ATGATGCAACAAGTTTCCGCCTCGCACTATCGACTGGATCCAACGATACA
CCTACTGGCGACTCCACCTCCTCCGCCCGCCAAGATCATCAGCAAAGTGA
GCACGTGTCTCGTGCGCAAGCCATCAGTGGTGGCAAGTGGTCCGGCGGTG
AAGCTCGCTGCTTCAGTACCTGTGCCCACTGTTTCCAGCCTGGTGCAGCC
TCCATTGGTAAGCATTTCCAAGCGGAAAATTGTGAGGCAAGGAGCATTGA
AAGCAGCGCCAGCGGTTGCTGCCCTCCATCCTCCTCCACCTGCTAAACGC
ACTAGGTACAAATTAGTGCGTTCCATATCACTTACCTGCACACCGCTGGT
CAAAAAGCGTCGTCCTCTACGCGAGTTTGTGGGCCAGTACGCCCTGAGAC
GCACCAATGAAGCGCAGCCCAACAGAAAACTGAGCTCCAAGCCGCAGGCG
CTGAAGCTGGGCGTTAACAAATCCCTGAGCATGGTCAGCATACACGGTGT
GATGTACAAGAAGATATCGAAGAACAAAATAACCAAGCTGGATGCCAGTT
CCTCCGCTAGGGTAGCCAAATCGGAGAGTCCCAGGACCTTGCAGCGTACC
TTGTCCGGCAGAACGCTCTTCGTCAGCGGCAATAAGTTCATTTTAGATCC
TTCCGGCTGCCGCCTGACCAGAGTTTCAACCTCATCAACTGGTGCTACCC
AGAGTAGCGTAAATCGTAGCATCCTGAGGCGCATCGATATCGGCGGCCTT
ACCTACGTTGCTTCGCCAAAGGCACTGAATGTCTTTGTACGCACCAGTAA
TCACGTGTCGCGAGCCCATTTAATCACCGCCAAACAGAGAAGCCTGACGT
TGCTCAACAAATCGTTGGTGAAGACCAATGTGCCTTGTGCCATCTTCCAG
AAGCTGGGCAAGTGCGTTGCCCATAGTCGTGGCAAGTGCCGCAAGCTGCA
CGACAAGCGGCAGGTTGCCATCTGTGTCAGCTTTCTGCGCGGGGAGTGCA
CCAAACCCAAATGCCTGCTGTCCCATAATGTCACGCTGGAGAAGATGCCC
GTCTGTCGGTACTATTTGCGCGGCGTTTGCGTTCGCGAGGATTGCCCGTA
CCTACACAAGAAGCTGAGCAGCAAGACCGAGATTTGTATTGACTTTGTGC
GCGGCTACTGTCCGTTGGCTGCCGAGTGCAACAAACGTCACGAGTTTTCC
TGTCCCGAGTTGGAGCGCAAGGGCAAGTGCGAATTACCCAGGTGCGTGTT
CTGTAAGAAGTCGCCATCAAAGCGATTGGCCAAAGTCAAGTCGCGTCCCA
AACTGGGCAGTAAACCTGTCGCCTTCACGGATACCGCGAAAGAATCGTCT
ACAGCGGATGAGTTGCCCACCAGTTCACGCTACTTTGGGTCCCACAAGGA
ACCAGCGGAAGCAATATTGACTAGAGATGATGTGGAACAGAAGAAACCTG
AAGCGGAGGATGAGGATCAGAAGGAAGCGGGTGCCCCTTGCCCTCGACGA
CGTCCTCAACTGGGAACTCTACCCTCTTTTATTCCCTTAGGTGGCGAAGA
AAAGCTATAAAAGCTTTCTAGACCAT
BS30040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZC3H3-RA | 1794 | CG6694-PA | 1..1794 | 17..1810 | 8970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZC3H3-RA | 2042 | CG6694-RA | 116..1913 | 13..1810 | 8975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8508977..8509648 | 684..13 | 3345 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8508329..8508880 | 1234..683 | 2745 | 99.8 | Minus |
| 3L | 28110227 | 3L | 8507598..8507983 | 1810..1425 | 1930 | 100 | Minus |
| 3L | 28110227 | 3L | 8508040..8508238 | 1426..1228 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:38:49 has no hits.
BS30040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-19 09:16:10 Download gff for
BS30040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZC3H3-RA | 109..1895 | 22..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:03 Download gff for
BS30040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZC3H3-RA | 125..1911 | 22..1808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:23 Download gff for
BS30040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZC3H3-RA | 125..1911 | 22..1808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:23 Download gff for
BS30040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8507600..8507981 | 1427..1808 | 100 | <- | Minus |
| 3L | 8508040..8508235 | 1231..1426 | 100 | <- | Minus |
| 3L | 8508333..8508878 | 685..1230 | 100 | <- | Minus |
| 3L | 8508977..8509639 | 22..684 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:03 Download gff for
BS30040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8500700..8501081 | 1427..1808 | 100 | <- | Minus |
| arm_3L | 8501140..8501335 | 1231..1426 | 100 | <- | Minus |
| arm_3L | 8501433..8501978 | 685..1230 | 100 | <- | Minus |
| arm_3L | 8502077..8502739 | 22..684 | 100 | | Minus |
BS30040.pep Sequence
Translation from 16 to 1809
> BS30040.pep
MLPHISADEAQPSMSRKVYINPNFQLQGQTAHQLPFQVPFQAFQAPLQPQ
PAIHINPHFLNRQRAMYDQYQREQQEQLMMQQVSASHYRLDPTIHLLATP
PPPPAKIISKVSTCLVRKPSVVASGPAVKLAASVPVPTVSSLVQPPLVSI
SKRKIVRQGALKAAPAVAALHPPPPAKRTRYKLVRSISLTCTPLVKKRRP
LREFVGQYALRRTNEAQPNRKLSSKPQALKLGVNKSLSMVSIHGVMYKKI
SKNKITKLDASSSARVAKSESPRTLQRTLSGRTLFVSGNKFILDPSGCRL
TRVSTSSTGATQSSVNRSILRRIDIGGLTYVASPKALNVFVRTSNHVSRA
HLITAKQRSLTLLNKSLVKTNVPCAIFQKLGKCVAHSRGKCRKLHDKRQV
AICVSFLRGECTKPKCLLSHNVTLEKMPVCRYYLRGVCVREDCPYLHKKL
SSKTEICIDFVRGYCPLAAECNKRHEFSCPELERKGKCELPRCVFCKKSP
SKRLAKVKSRPKLGSKPVAFTDTAKESSTADELPTSSRYFGSHKEPAEAI
LTRDDVEQKKPEAEDEDQKEAGAPCPRRRPQLGTLPSFIPLGGEEKL*
BS30040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZC3H3-PA | 597 | CG6694-PA | 1..597 | 1..597 | 3085 | 100 | Plus |
