BS30065.complete Sequence
2993 bp assembled on 2012-06-19
GenBank Submission: KX801096
> BS30065.complete
GAAGTTATCAGTCGACATGGAGAATCTTGGCTATAAGGAGGGCAGCACCA
AGCCCCGCCGCATGACACGTTCGATCAGCGTCGTTACCAAGACCGAAGTG
GAACAGCCGCTCACGGAGAATAATGCAAATAACCGCTTCAAATCGATTCC
ACCCAACTTGATGGTGCGATGGCGGAACAACACTGACGCCATGATCGAAG
CCCAGTACCCGACCGCTGGAGAATTCGAATACATGGAGTGTGGACCGTCG
CCGCCGGCGGAGAGTGCGCCGAGCATGTACGACAGCTTCGAGGAGCCGAC
CAGCGAGCTGAGCGTCCAGATATGCAACGATACGCTGCGGATAAGCCTGA
TCGACCAGATGAAGAGCGCAGCGGGGCGCGTCAAGCTCTTCGAGGACATC
GAGCAGAGCAACGTGGTGGCCGAGGGCATACGGACGCACTTTGAGTCCGC
CTCAAAGCTGGAGAAGAATCTCTGCTACCTGTGGGCCGCGTACCTCAAGC
GCTGGGATCTGATCGAGAGTCTGCTGGAGGCGGGAGCCGACCTGCACTTC
TGCGATCAGAACGGAATATCAGCCTTGCACCTTAGCGCCTTCAGTGGCTG
CTTGGCCACCTTGGGCCTTCTGGTCGCCAAGGGTTTGAATGTCAATCTGC
AGTCCAAGTGCTACACCCCTCTGCACTGCGCAGCCTTTGGAAATGCTGCG
GAGGCAGCAAAGCTACTGATCAACAATGGGGCGGACATATCCAAGGACAC
CAGCAAGCCAAACTGCGAGGAGAGCCTGCTGCACTGCGCCGTGCGTTCCA
ATGCCCTGGAGTGTCTGCAGATCTTCATTGCCGAAGGCGCCGACGTCAAC
TCGCTCAAACCGAATGGCACCAATGCCATTCACCTGGCAGCTGATCTGGG
CAATATTCAGTGTCTGGAAGCCTTACTGAATGCTCCCAATGCAGATGCCA
ATGTGCGTATCTGCATCCGCGAAAAGGAGTCCACAGCCTTGCATCTGGCA
GCAGATGAGGGCAACGTGGAGTGTGTGGACTTACTCCTGGCCAAAGGTGC
TGATGCGAAGTTGAAGAACCATCGCGGTTTCACACCGCTCCACCTGGCAG
CTAGAACTTCCAGTCTGGACTGCGTAGAATCGTTGCTGAGGAATGGCAAT
GCCGACGCCAATGCCGAGGACTTCGATCACCGTACTCCGCTTCACGCGGC
GGTGGGAAAATCGGAGAACGCCTATGACATCATGGAAACGCTCATCCAGT
GGGGTGCCAATGTCAATCATAAGGACATTTACGGGTTTACAGCTCTTCAC
CTGGCTGCGTTGGATGGGCTGGTGCAGTGCGTCGAGATGCTGATATTCCA
CGGAGCGGATGTGACCACCAAATCGAAGAAAGGTACCTCCGCGTTGAACG
TTATCACCCGGAAGACCCCGGCTTCAGTGGCCATGATCAGACAGAAACTG
GACGCAGCTATTACGCTGCACCACTCGCAGGACCCCGTGAACCGTGAGGT
GGAATTGGAGCTGGACTTCCGTCAGCTGCTACAGCACTGTCATCCGCGCG
AGATCAGCTACCTAAACACGTTCGTCGACGAGGGTCAGAAGGAGATACTG
GAGCACCCGCTCTGCTCCTCGTTTCTGTACATCAAGTGGGGCAAGATCCG
CAAGTACTACATTGGCAGGCTCATCTTCTGCTTCAGCTTCGTGCTTTTCC
TCACGCTTTACGTGCTGACTGCTTTGGCCCACAACTGCTACAATGGGAGC
AAGAACGACAACACGACCATTCCAGCGCAGGAGTTGTGCCAGAAGCAATC
CATCCTGGGAGATATGCTCAGAAACAACCCCTTTGTGATGGAGATGCAAT
GGTGGGTTCTGGTTGCCATCACCATAGTGGAGATTTTTCGAAAGCTATAT
GGCATTACGGGCTACTCCTCATTTCGGCACTACGTAACGCAAGTGGAGAA
CATAATGGAGTGGTTCGTGATAACCAGCGTGTTTGTTATATCCTACATCT
ACACCAACAAGACGTACACGTTTCAAAACCACATAGGCGCCTTCGCCGTG
CTGCTCGGTTGGACAAATCTCATGTTGATGATAGGTCAGCTGCCGGTCTT
CGATGTCTATGTGGCCATGTACACGAGAGTCCAGGGGGAATTCGCAAAGC
TATTTATGGCCTATTCCTGCATGCTGATTGGTTTTACCATCAGTTTCTGT
GTTATCTTCCCATCGTCGTCGTCGTTTGCCAATCCGTTTATGGGCTTCAT
AACAGTGCTGGTGATGATGATTGGTGAACAGGATTTATCGCTGCTCATCA
ACGATCCCGAAGGCAAGGATCCACCTTTCCTGCTAGAAGTCAGCGCACAA
ATCACTTTTGTTCTGTTCCTGCTGTTCGTGACCATCATTCTGATGAACCT
GCTCGTGGGCATTGCAGTGCATGATATCCAAGGATTGAAGAAGACGGCGG
GGTTGTCTAAGCTCGTGCGTCAAACGAAGCTGATAAGCTACATAGAGTCG
GCGCTATTCAACGGCTACCTTCCGACATGGCTGCGCAACTTGCTCCATTA
CACCGCGCTGGTCTCTCCCCAAGCTTATAGAGTGGTTCTGTGCGTCAAGC
CACTGAATCCCAGCGAGAAACGCTTGCCCCGGGAAATCCTAATGAAGGCT
TATGAAGTAGGAAAAATGCGCAAGCATTTCGGTCATACTATCTCGTCAAA
GAACTCAGCCGAAAACTATTTGTCGTACAAGAACAAGTATAACAACAATA
ATGGCGCCACGACCGGATATGTACTACCCGATTCGGACCCGGATGCCGGG
CAATTCACCACACTAACCACAAAGATCGATGACAATGCTGATCGGATCGA
GTTCCTCACCCAGGAGATCCAGGAGCTAAAGCAGGCGCTCATCTCGCAGC
AACAGCAAGCCAGCAAGGTGATCGACAAGCTGCTGATTGTGATCTCCAAT
CAGCAGAAACAGAATCTGCGCAAGTAGAAGCTTTCTAGACCAT
BS30065.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wtrw-RC | 2961 | CG31284-PC | 1..2961 | 17..2977 | 14805 | 100 | Plus |
| wtrw-RB | 2961 | CG31284-PB | 1..2961 | 17..2977 | 14805 | 100 | Plus |
| wtrw-RA | 2961 | CG31284-PA | 1..2961 | 17..2977 | 14805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wtrw-RC | 3758 | CG31284-RC | 404..3365 | 16..2977 | 14810 | 100 | Plus |
| wtrw-RB | 3738 | CG31284-RB | 384..3345 | 16..2977 | 14810 | 100 | Plus |
| wtrw-RA | 3651 | CG31284-RA | 297..3258 | 16..2977 | 14810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7899255..7900754 | 1478..2977 | 7500 | 100 | Plus |
| 3R | 32079331 | 3R | 7897845..7899191 | 135..1481 | 6735 | 100 | Plus |
| 3R | 32079331 | 3R | 7894511..7894630 | 16..135 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:38:32 has no hits.
BS30065.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-19 09:16:07 Download gff for
BS30065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wtrw-RC | 405..3365 | 17..2977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:57 Download gff for
BS30065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wtrw-RA | 298..3258 | 17..2977 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:16 Download gff for
BS30065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wtrw-RA | 298..3258 | 17..2977 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:16 Download gff for
BS30065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7894512..7894630 | 17..135 | 100 | -> | Plus |
| 3R | 7897846..7899190 | 136..1480 | 100 | -> | Plus |
| 3R | 7899258..7900754 | 1481..2977 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:57 Download gff for
BS30065.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3720234..3720352 | 17..135 | 100 | -> | Plus |
| arm_3R | 3723568..3724912 | 136..1480 | 100 | -> | Plus |
| arm_3R | 3724980..3726476 | 1481..2977 | 100 | | Plus |
BS30065.pep Sequence
Translation from 16 to 2976
> BS30065.pep
MENLGYKEGSTKPRRMTRSISVVTKTEVEQPLTENNANNRFKSIPPNLMV
RWRNNTDAMIEAQYPTAGEFEYMECGPSPPAESAPSMYDSFEEPTSELSV
QICNDTLRISLIDQMKSAAGRVKLFEDIEQSNVVAEGIRTHFESASKLEK
NLCYLWAAYLKRWDLIESLLEAGADLHFCDQNGISALHLSAFSGCLATLG
LLVAKGLNVNLQSKCYTPLHCAAFGNAAEAAKLLINNGADISKDTSKPNC
EESLLHCAVRSNALECLQIFIAEGADVNSLKPNGTNAIHLAADLGNIQCL
EALLNAPNADANVRICIREKESTALHLAADEGNVECVDLLLAKGADAKLK
NHRGFTPLHLAARTSSLDCVESLLRNGNADANAEDFDHRTPLHAAVGKSE
NAYDIMETLIQWGANVNHKDIYGFTALHLAALDGLVQCVEMLIFHGADVT
TKSKKGTSALNVITRKTPASVAMIRQKLDAAITLHHSQDPVNREVELELD
FRQLLQHCHPREISYLNTFVDEGQKEILEHPLCSSFLYIKWGKIRKYYIG
RLIFCFSFVLFLTLYVLTALAHNCYNGSKNDNTTIPAQELCQKQSILGDM
LRNNPFVMEMQWWVLVAITIVEIFRKLYGITGYSSFRHYVTQVENIMEWF
VITSVFVISYIYTNKTYTFQNHIGAFAVLLGWTNLMLMIGQLPVFDVYVA
MYTRVQGEFAKLFMAYSCMLIGFTISFCVIFPSSSSFANPFMGFITVLVM
MIGEQDLSLLINDPEGKDPPFLLEVSAQITFVLFLLFVTIILMNLLVGIA
VHDIQGLKKTAGLSKLVRQTKLISYIESALFNGYLPTWLRNLLHYTALVS
PQAYRVVLCVKPLNPSEKRLPREILMKAYEVGKMRKHFGHTISSKNSAEN
YLSYKNKYNNNNGATTGYVLPDSDPDAGQFTTLTTKIDDNADRIEFLTQE
IQELKQALISQQQQASKVIDKLLIVISNQQKQNLRK*
BS30065.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wtrw-PC | 986 | CG31284-PC | 1..986 | 1..986 | 5105 | 100 | Plus |
| wtrw-PB | 986 | CG31284-PB | 1..986 | 1..986 | 5105 | 100 | Plus |
| wtrw-PA | 986 | CG31284-PA | 1..986 | 1..986 | 5105 | 100 | Plus |
| wtrw-PD | 969 | CG31284-PD | 24..969 | 41..986 | 4902 | 100 | Plus |
| pyx-PA | 956 | CG17142-PA | 124..827 | 174..901 | 977 | 33.7 | Plus |
