BS30066.complete Sequence
644 bp assembled on 2012-05-24
GenBank Submission: KX805738
> BS30066.complete
GAAGTTATCAGTCGACATGGCGCCGACCACGACGATTGAGACCATCACAA
TCACGAGGCCGCTGAAGGTGATTGCATTTATCTGCGGCGTCATCGTGGTG
GCCCTCATGATTATGGCTCTGGCGTCCACAGATTGGTTAATGGCCTCAGA
CTGGCGGCAAGGTCTCTTTGTGCACTGCATCGAGGATGATTCGGTGCCGC
CGCTGCCATTCAATATCCAGGATCCGCCAGGATGCTACTGGACCCGCGAT
GTCGGCTACATTAAGGCCACAGCCGCTCTGTGCATCATCACGCTGATAAC
GGACGTCATTGCCACAGTACTGACAGGTCTGGGCCTCCGGACGCAGAATC
ATAATCTAAAGTATAAGTTCTATCGTATAGCAGTATTGGTGATGCTTGTA
TCCTTGCTGGCCGTATTGTCCGCCTTGATCGTATATCCAGTATGCTTTGC
CGGCGAACTAACCATGGCCAATCGACGAGTCTGGGAATTTGGCTGGGCCT
ATGGCGTCGGCTGGGGTGCGGCCATCTTTCTATTTGGGGCCGTTGTCCTG
CTGCTCTGCGACAAGGAGTCGGAGGAGATCTACTATAAGGAAAGGAAAAT
CGTACATGAAAACCAAATGCGCGCCTAGAAGCTTTCTAGACCAT
BS30066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45049-RF | 612 | CG45049-PF | 1..612 | 17..628 | 3060 | 100 | Plus |
| CG45049-RE | 822 | CG45049-PE | 211..822 | 17..628 | 3060 | 100 | Plus |
| CG45049-RC | 612 | CG45049-PC | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45049-RF | 1516 | CG45049-RF | 136..747 | 17..628 | 3060 | 100 | Plus |
| CG45049-RE | 3417 | CG45049-RE | 551..1162 | 17..628 | 3060 | 100 | Plus |
| CG45049-RC | 3708 | CG45049-RC | 842..1453 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22729351..22729540 | 66..255 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 22729946..22730107 | 467..628 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 22729609..22729759 | 254..404 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 22729817..22729879 | 405..467 | 315 | 100 | Plus |
| 3R | 32079331 | 3R | 22729234..22729286 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:28:06 has no hits.
BS30066.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-24 16:57:03 Download gff for
BS30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6982-RB | 450..1061 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:00 Download gff for
BS30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17618-RC | 842..1453 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:03 Download gff for
BS30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45049-RC | 842..1453 | 17..628 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:03 Download gff for
BS30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22729234..22729284 | 17..67 | 100 | -> | Plus |
| 3R | 22729353..22729539 | 68..254 | 100 | -> | Plus |
| 3R | 22729610..22729759 | 255..404 | 100 | -> | Plus |
| 3R | 22729817..22729879 | 405..467 | 100 | -> | Plus |
| 3R | 22729947..22730107 | 468..628 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:00 Download gff for
BS30066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18555669..18555829 | 468..628 | 100 | | Plus |
| arm_3R | 18554956..18555006 | 17..67 | 100 | -> | Plus |
| arm_3R | 18555075..18555261 | 68..254 | 100 | -> | Plus |
| arm_3R | 18555332..18555481 | 255..404 | 100 | -> | Plus |
| arm_3R | 18555539..18555601 | 405..467 | 100 | -> | Plus |
BS30066.pep Sequence
Translation from 16 to 627
> BS30066.pep
MAPTTTIETITITRPLKVIAFICGVIVVALMIMALASTDWLMASDWRQGL
FVHCIEDDSVPPLPFNIQDPPGCYWTRDVGYIKATAALCIITLITDVIAT
VLTGLGLRTQNHNLKYKFYRIAVLVMLVSLLAVLSALIVYPVCFAGELTM
ANRRVWEFGWAYGVGWGAAIFLFGAVVLLLCDKESEEIYYKERKIVHENQ
MRA*
BS30066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45049-PF | 203 | CG45049-PF | 1..203 | 1..203 | 1061 | 100 | Plus |
| CG45049-PC | 203 | CG45049-PC | 1..203 | 1..203 | 1061 | 100 | Plus |
| CG45049-PB | 203 | CG45049-PB | 1..203 | 1..203 | 1061 | 100 | Plus |
| CG45049-PE | 273 | CG45049-PE | 71..273 | 1..203 | 1061 | 100 | Plus |
| CG45049-PD | 273 | CG45049-PD | 71..273 | 1..203 | 1061 | 100 | Plus |
