BS30104.complete Sequence
2492 bp assembled on 2012-10-15
GenBank Submission: KX801675
> BS30104.complete
GAAGTTATCAGTCGACATGGCCCACGAGGGGGAGCAGTTCATCAAGGACA
TACAACGCGAGTATGTGGACTTTCTGGACGACGAGGAGGATCAGGGCATC
TATGCGGGCCACGTCAAGGATATGATCGCGGAGAAGAGCAAGCGCCTGAT
CGTGAATGTCAACGATCTAAAACGCAAGAATCCGCAACGTGCATTGGGGC
TACTGAGCAACGCGGCGGATGAGCAGCTGGCCTTTGGCAGGGCGCTCAAG
GAGTATGCGTCCACGGTTGATCCGGGCTATGCCAAAATGCATGAGGATCT
GTTTGTCGGCTTCGAGGGCTGCTTTGGCAATCGGCATGTGACGCCGCGCT
CCCTCACCTCCATCTATCTGGGCAACATGGTGTGCGTGGAGGGCATTGTT
ACCAAGGTATCGCTGATTCGTCCCAAGGTGGTGCGCAGCGTTCACTATTG
CCCCAATACGCGTAAGGTAATGGAGCGCAAATACACCGATCTCACATCGT
TCGAGGCTGTGCCATCTGGCGCTGCCTATCCCACAAAGGACGAGGATGGC
AATCTGCTGGAGACCGAATACGGTTTGTCCGTTTACAAGGATCACCAGAC
GCTGACCATTCAAGAGATGCCCGAGAAGGCGCCGGCTGGCCAATTGCCGC
GTTCGGTGGATATTGTGTGCGACGACGATCTCGTGGATCGCTGCAAGCCC
GGCGATCGTGTACAGATTGTGGGCAGCTATCGCTGTTTGCCGGGCAAACG
CGGTGGCTACACCTCGGGCACGTTCCGCACCGTGCTGCTGGCCAACAATA
TATCGCTGCTCAGCAAGGAGAGCAATTTGGACATATCGCGCGAAGACATC
ATGCTGTGCAAGAAGCTAGCGAAGAATAACGACATCTTCGAGCTGCTCAG
CAAGAGTTTGGCGCCCTCGATTCATGGACATGCCTATGTGAAGCAGGCCA
TTCTTTGCCTGCTGCTCGGCGGCGTTGAGAAGATCCTGCCGAATGGCACA
CGCCTGCGTGGCGATATTAATGTCTTGCTTATCGGCGATCCTTCGGTGGC
CAAGTCGCAGCTACTGCGCTACGTCTTGAATACGGCACCAAGGGCCATAC
CGACAACGGGTCGCGGATCCAGCGGCGTCGGTCTGACGGCGGCGGTTACC
ACGGATCAGGAGACCGGTGAGCGGCGATTGGAGGCGGGCGCCATGGTCCT
GGCCGATCGCGGTGTCGTCTGCATTGATGAGTTTGACAAGATGAGCGACA
TCGATCGCACAGCCATTCACGAGGTGATGGAACAGGGTCGTGTTACCATT
TCCAAAGCGGGCATCCATGCCTCGCTCAATGCTCGCTGCTCCGTTTTGGC
AGCCGCTAATCCGGTGTACGGAAGGTATGATCAATATAAGACGCCGATGG
AAAATATTGGACTGCAGGATTCGCTGCTTTCGCGTTTCGATTTGCTCTTC
GTTATGCTGGACGTGATTGACAGCGATGTGGATCAAATGATTTCGGACCA
TGTGGTGCGCATGCATCGCTATCGCAATCCCAAGGAGGCCGACGGCGAGC
CCTTGTCCATGGGCAGCTCCTATGCGGACTCCTTGTCCTTTGTTTCCAGC
AGCGAGGAGAAGAAGGACACCGAGGTGTACGAAAAGTACGATGCCCTGCT
GCATGGCAAGTCGCGTCAGCGTCACGAGAAGATCCTATCCGTGGAGTTCA
TGCGCAAGTACATACACATTGCCAAGTGTATGAAGCCCAAATTGGGCGAG
CAGGCCTGCGAGGCGATTGCCAATGAGTATTCGCGCCTGCGCTCCCAGGA
GGCGGTCGAAACGGATGTGGCACGCACGCAGCCAATAACGGCCCGTACCC
TGGAGACCCTCATCCGTTTGTCCACGGCCCATGCCCGGGCACGCATGTCC
AAATCGGTGACCATCGACGATGCCCATGCGGCCATCGAACTGGTACAGTT
TGCCTACTTTAAGAAGGTGCTGGATAAGGATCGCCCCAGCAAGCGTCGTC
GCAACAGCGGCTCCGATGCGGAGGATGACAACGGTGAGGCATCTAGCCAG
CGCTCACCATCGCGACGCTCCAAACGCACACGCACAGCGACCGTCGGTGC
CGATAGCGATGAGGAGGATATTGAGCCACCACAGCCGGATGCTGGCGATT
TGACGCGTCGCGAAACGCGTCGTTCTCTGCCCGCTCGCTCGGTCGCCATG
CTGATGGCCAGCCCCTCCAGTGAGGAGCAGTCGGTGGCCACATCGACCAC
GGAGCCGGCCATCATTAGCGATGCCCGCCTGGGCGAGTTCAAGAACAATT
TGCAGCGACTGTTTCGCGAGGCACGCGAACAGAGCTTGGCGCTGGCCAGG
ATCACCACGGCCATCAACGTTGGCAGCCAGGAGCCGTTCACCGCTGGCGA
AATCGAGGCCGCCGTGCATCGCATGACCGAGGACAATCAGATCATGGTCG
CCGACGATATAGTCTTTCTCATCTGAAAGCTTTCTAGACCAT
BS30104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm3-RA | 2460 | CG4206-PA | 1..2460 | 17..2476 | 12300 | 100 | Plus |
| Mcm3-RB | 2457 | CG4206-PB | 1..2457 | 17..2476 | 12220 | 99.9 | Plus |
| Mcm7-RA | 2163 | CG4978-PA | 1306..1392 | 1199..1285 | 210 | 82.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm3-RA | 2747 | CG4206-RA | 143..2602 | 17..2476 | 12300 | 100 | Plus |
| Mcm3-RB | 2744 | CG4206-RB | 143..2599 | 17..2476 | 12220 | 99.9 | Plus |
| Mcm7-RA | 2451 | CG4978-RA | 1459..1545 | 1199..1285 | 210 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5323997..5325355 | 17..1375 | 6795 | 100 | Plus |
| X | 23542271 | X | 5325725..5326593 | 1608..2476 | 4345 | 100 | Plus |
| X | 23542271 | X | 5325418..5325652 | 1375..1609 | 1175 | 100 | Plus |
| 3L | 28110227 | 3L | 8893256..8893342 | 1199..1285 | 210 | 82.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:49:16 has no hits.
BS30104.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:20 Download gff for
BS30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm3-RA | 150..2608 | 17..2475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:22 Download gff for
BS30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm3-RA | 143..2601 | 17..2475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:34 Download gff for
BS30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm3-RA | 143..2601 | 17..2475 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:34 Download gff for
BS30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5323997..5325355 | 17..1375 | 100 | -> | Plus |
| X | 5325419..5325652 | 1376..1609 | 100 | -> | Plus |
| X | 5325727..5326592 | 1610..2475 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:22 Download gff for
BS30104.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5218030..5219388 | 17..1375 | 100 | -> | Plus |
| arm_X | 5219452..5219685 | 1376..1609 | 100 | -> | Plus |
| arm_X | 5219760..5220625 | 1610..2475 | 100 | | Plus |
BS30104.pep Sequence
Translation from 16 to 2475
> BS30104.pep
MAHEGEQFIKDIQREYVDFLDDEEDQGIYAGHVKDMIAEKSKRLIVNVND
LKRKNPQRALGLLSNAADEQLAFGRALKEYASTVDPGYAKMHEDLFVGFE
GCFGNRHVTPRSLTSIYLGNMVCVEGIVTKVSLIRPKVVRSVHYCPNTRK
VMERKYTDLTSFEAVPSGAAYPTKDEDGNLLETEYGLSVYKDHQTLTIQE
MPEKAPAGQLPRSVDIVCDDDLVDRCKPGDRVQIVGSYRCLPGKRGGYTS
GTFRTVLLANNISLLSKESNLDISREDIMLCKKLAKNNDIFELLSKSLAP
SIHGHAYVKQAILCLLLGGVEKILPNGTRLRGDINVLLIGDPSVAKSQLL
RYVLNTAPRAIPTTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLADRGV
VCIDEFDKMSDIDRTAIHEVMEQGRVTISKAGIHASLNARCSVLAAANPV
YGRYDQYKTPMENIGLQDSLLSRFDLLFVMLDVIDSDVDQMISDHVVRMH
RYRNPKEADGEPLSMGSSYADSLSFVSSSEEKKDTEVYEKYDALLHGKSR
QRHEKILSVEFMRKYIHIAKCMKPKLGEQACEAIANEYSRLRSQEAVETD
VARTQPITARTLETLIRLSTAHARARMSKSVTIDDAHAAIELVQFAYFKK
VLDKDRPSKRRRNSGSDAEDDNGEASSQRSPSRRSKRTRTATVGADSDEE
DIEPPQPDAGDLTRRETRRSLPARSVAMLMASPSSEEQSVATSTTEPAII
SDARLGEFKNNLQRLFREAREQSLALARITTAINVGSQEPFTAGEIEAAV
HRMTEDNQIMVADDIVFLI*
BS30104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm3-PA | 819 | CG4206-PA | 1..819 | 1..819 | 4152 | 100 | Plus |
| Mcm3-PB | 818 | CG4206-PB | 1..818 | 1..819 | 4135 | 99.9 | Plus |
| Mcm7-PA | 720 | CG4978-PA | 136..640 | 97..646 | 817 | 37.7 | Plus |
| Mcm2-PA | 887 | CG7538-PA | 193..775 | 22..643 | 810 | 34.8 | Plus |
| Mcm5-PA | 733 | CG4082-PA | 218..693 | 192..702 | 767 | 37.4 | Plus |
