BS30105.complete Sequence
2540 bp assembled on 2012-10-03
GenBank Submission: KX801825
> BS30105.complete
GAAGTTATCAGTCGACATGAATATTGTCGGGGAATATGAATACAGCTCCA
AGGATATGCTGGGCCATGGCGCCTTTGCCGTCGTCTACAAAGGACGTCAT
CGCAAGAAACACATGCCGGTGGCCATCAAGTGCATCACGAAGAAGGGACA
ACTGAAGACGCAGAATCTGCTCGGCAAGGAGATCAAGATCCTGAAGGAGC
TCACCGAGCTGCACCATGAGAATGTGGTGGCTCTGCTGGACTGCAAGGAG
TCCCAGGATTGCGTCAGCCTGGTCATGGAGTATTGCAATGGCGGCGACTT
GGCGGATTATCTGAGTGTCAAGGGGACGCTCAGCGAGGATACCGTTAGAC
TCTTCCTCGTGCAACTAGCTGGTGCTATGAAAGCACTTTATACCAAAGGA
ATTGTGCATCGTGATCTCAAGCCACAAAACATTTTGCTATCGCACAATTA
TGGCAAAACATTGCCAGCTCCATCGAAAATAACCCTGAAAATTGCGGATT
TTGGGTTTGCGCGATTCCTGAACGAGGGCGCCATGGCAGCCACTCTGTGC
GGCTCTCCCATGTATATGGCGCCCGAGGTGATCATGTCGCTGCAGTACGA
CTCCAAGGCGGATCTCTGGTCGCTGGGAACGATTGTCTACCAGTGTTTGA
CTGGCAAGGCGCCATTCTATGCACAAACGCCCAACGAACTGAAGTCCTAC
TACGAGCAGAATGCTAACCTGGCACCAAAAATTCCAAGTGGCGTGTCACC
GGATCTGAGGGATCTGCTGCTGTGCCTGCTGCGCCGCAACTCCAAGGATC
GCATCTCGTACGAGAGCTTCTTTGTTCACCGCTTCCTTCAGGGCAAGAAG
GCGGCCGTGTCGCCAGTTGACATGCCACCGCTTGGCGGAACACCACCTGC
CAAGGCCAAGAGCCCCTTGCAGCAGCAGCTGGAGCAGGAACTGAAGCTGG
TCAAGCTGGCCGAGCAACAGCAGAAGGAGCGCGAGGAGCAGGAGGCCCAG
GAGGACGAGAACACGGTGTCCGTGGTGGCCAATCCGGCCATTTGTGCCAC
CATCACCAACGTAGGTGTCCTGTGCGACAGTGAGAACAACAGCGGTTCTT
GCAGCTCCCACGAGGACTCCGATGACTTTGTGCTGGTGCCAAAGAACCTT
CCGGAGGACCAGCGACAGGGTCTGGCCCAAGTCCAAGCCCAGCCCGCTTC
CGGTGGCCAACGTCCACAGCAGCAACAAAATCAATCCAGTCCGCCACGTC
CCAGCAGTCTGCCCATCTCTGAACCCAAACCAGTACCGGCTCCCGCTCGG
CGGCAGGTGGCCAGGCCCGGGCCGTTAACGGTAGCCACACTGGGTGGCCA
GCAGATACCCCGATCGCAGCCAATTAGCGTAAAGCAACCGCGACCGGATC
AGCGCAAGAGCAGTGTGAGCAGTGACATTAACTCGATCTCACCGCCGGCG
GTGCAGTTTGCCATTGGAACGCCGCCTACACGTATGCGTTCTGCCTCTGG
TGGATCGCTGTCGGAGACACCGCCGCCGCATGCACCGAGCACCTGGCAGG
TGTCGCCAGGACACTCGCAATCGCCGTTGCGTCGAAGCGGCAATAGCTCG
CCAGTTCTGCCATCCGCTGCGCTTACCAAATTGCCCACTTTGGGCAGTCC
AACAATGCTGGTGGCGCCGGGATCATTGGGCTCGATTGGTTCGGCGGGCA
GTGGATCGGAGAACAACAATCAGCATCACATGCTGGGACCGCGAGCTTTT
ACGCTGCCCGAACTGGGGGCCACTGGTGGCCTACATAGTCTGCTGGACAC
AGGAGCCGGCGGCGGTGGGGAACCACATGCATTCCAGGCCCCAGAACTGT
CCGAAGAGACGCTGATGGATCGCGAGCACAACGAGACATTGTCCAAGCTG
AACTTTGTGCTGGCGCTCACCGATTGTATCCAGGAAGTTGCCGATTCGCG
ATGCGCACCGCTCTCCACGTTCATGGTGGCCGGCAGTCAGTCGGCGGCGC
AAGCGGCGTCAGCGGATGCACAGCAGATACCGCCGCACGCACCTGAGCAC
TGCAAACGGGCCGAGCGCCTGGTGCTGCTCGTCCGGGGACTGCAGCTCCT
ATCGTCCGGGATGAATCTGGCTTCCCAGCAGCTAAGCAATGGCCAGCTAA
AGCCGTCGTCCAATGTGAAGAATGCTTTGCTCACCATGAACGCCAAATAC
CGGAGCATGCTGTTCGAATCGAAACGCCTCAATGGCAGCGGACTATTGCA
GAAGGCGAATGCATTTAACATAACGGCGGACAAGATTCTCTATGACTACG
CACTGGATATGTGCCAGGCCGCTGCTCTGGATGAGCTACTGAAGAACACG
AAGAATTGCTTCGAACGTTACAACACGGCACACATTCTGCTTCATTCGTT
GGTGCAAAAGTGCAATCATCCGCAGGACAAAATGATGCTGAACAAATATC
GCGATGCCGTTGAGAAGCGTTTGAGCATATTGCAGCAGCATGGCTATATA
TACATGACCGATGAGAATGCTTAGAAGCTTTCTAGACCAT
BS30105.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg1-RA | 2508 | CG10967-PA | 1..2508 | 17..2524 | 12540 | 100 | Plus |
| Atg1-RB | 2568 | CG10967-PB | 907..2568 | 863..2524 | 8310 | 100 | Plus |
| Atg1-RB | 2568 | CG10967-PB | 1..854 | 17..870 | 4255 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg1-RA | 4088 | CG10967-RA | 673..3180 | 17..2524 | 12540 | 100 | Plus |
| Atg1-RB | 3446 | CG10967-RB | 1579..3240 | 863..2524 | 8310 | 100 | Plus |
| Atg1-RB | 3446 | CG10967-RB | 673..1526 | 17..870 | 4255 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12785871..12787029 | 2174..1016 | 5795 | 100 | Minus |
| 3L | 28110227 | 3L | 12797683..12797858 | 280..105 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 12787793..12787954 | 729..568 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 12787387..12787540 | 1016..863 | 770 | 100 | Minus |
| 3L | 28110227 | 3L | 12785672..12785809 | 2311..2174 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 12787593..12787733 | 870..730 | 690 | 99.3 | Minus |
| 3L | 28110227 | 3L | 12785471..12785607 | 2447..2311 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 12788249..12788378 | 494..365 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 12788541..12788630 | 368..279 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12804355..12804444 | 106..17 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12785337..12785413 | 2524..2448 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 12788015..12788090 | 569..494 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 809..842 | 950..917 | 116 | 82.4 | Minus |
BS30105.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 15:15:14 Download gff for
BS30105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 671..3178 | 17..2524 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:25 Download gff for
BS30105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 673..3180 | 17..2524 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:08 Download gff for
BS30105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 673..3180 | 17..2524 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:08 Download gff for
BS30105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12785337..12785413 | 2448..2524 | 100 | <- | Minus |
| 3L | 12785471..12785606 | 2312..2447 | 100 | <- | Minus |
| 3L | 12785672..12785808 | 2175..2311 | 100 | <- | Minus |
| 3L | 12785871..12787028 | 1017..2174 | 100 | <- | Minus |
| 3L | 12787387..12787536 | 867..1016 | 100 | <- | Minus |
| 3L | 12787597..12787733 | 730..866 | 100 | <- | Minus |
| 3L | 12787793..12787953 | 569..729 | 100 | <- | Minus |
| 3L | 12788016..12788089 | 495..568 | 100 | <- | Minus |
| 3L | 12788249..12788374 | 369..494 | 100 | <- | Minus |
| 3L | 12788541..12788628 | 281..368 | 100 | <- | Minus |
| 3L | 12797683..12797856 | 107..280 | 100 | <- | Minus |
| 3L | 12804355..12804444 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:25 Download gff for
BS30105.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12778571..12778706 | 2312..2447 | 100 | <- | Minus |
| arm_3L | 12778772..12778908 | 2175..2311 | 100 | <- | Minus |
| arm_3L | 12778437..12778513 | 2448..2524 | 100 | <- | Minus |
| arm_3L | 12778971..12780128 | 1017..2174 | 100 | <- | Minus |
| arm_3L | 12780487..12780636 | 867..1016 | 100 | <- | Minus |
| arm_3L | 12780697..12780833 | 730..866 | 100 | <- | Minus |
| arm_3L | 12780893..12781053 | 569..729 | 100 | <- | Minus |
| arm_3L | 12781116..12781189 | 495..568 | 100 | <- | Minus |
| arm_3L | 12781349..12781474 | 369..494 | 100 | <- | Minus |
| arm_3L | 12781641..12781728 | 281..368 | 100 | <- | Minus |
| arm_3L | 12790783..12790956 | 107..280 | 100 | <- | Minus |
| arm_3L | 12797455..12797544 | 17..106 | 100 | | Minus |
BS30105.pep Sequence
Translation from 16 to 2523
> BS30105.pep
MNIVGEYEYSSKDMLGHGAFAVVYKGRHRKKHMPVAIKCITKKGQLKTQN
LLGKEIKILKELTELHHENVVALLDCKESQDCVSLVMEYCNGGDLADYLS
VKGTLSEDTVRLFLVQLAGAMKALYTKGIVHRDLKPQNILLSHNYGKTLP
APSKITLKIADFGFARFLNEGAMAATLCGSPMYMAPEVIMSLQYDSKADL
WSLGTIVYQCLTGKAPFYAQTPNELKSYYEQNANLAPKIPSGVSPDLRDL
LLCLLRRNSKDRISYESFFVHRFLQGKKAAVSPVDMPPLGGTPPAKAKSP
LQQQLEQELKLVKLAEQQQKEREEQEAQEDENTVSVVANPAICATITNVG
VLCDSENNSGSCSSHEDSDDFVLVPKNLPEDQRQGLAQVQAQPASGGQRP
QQQQNQSSPPRPSSLPISEPKPVPAPARRQVARPGPLTVATLGGQQIPRS
QPISVKQPRPDQRKSSVSSDINSISPPAVQFAIGTPPTRMRSASGGSLSE
TPPPHAPSTWQVSPGHSQSPLRRSGNSSPVLPSAALTKLPTLGSPTMLVA
PGSLGSIGSAGSGSENNNQHHMLGPRAFTLPELGATGGLHSLLDTGAGGG
GEPHAFQAPELSEETLMDREHNETLSKLNFVLALTDCIQEVADSRCAPLS
TFMVAGSQSAAQAASADAQQIPPHAPEHCKRAERLVLLVRGLQLLSSGMN
LASQQLSNGQLKPSSNVKNALLTMNAKYRSMLFESKRLNGSGLLQKANAF
NITADKILYDYALDMCQAAALDELLKNTKNCFERYNTAHILLHSLVQKCN
HPQDKMMLNKYRDAVEKRLSILQQHGYIYMTDENA*
BS30105.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg1-PA | 835 | CG10967-PA | 1..835 | 1..835 | 4306 | 100 | Plus |
| Atg1-PB | 855 | CG10967-PB | 1..855 | 1..835 | 4275 | 97.7 | Plus |
| CG8866-PB | 465 | CG8866-PB | 8..268 | 8..277 | 470 | 39.3 | Plus |
| CG8866-PA | 520 | CG8866-PA | 8..268 | 8..277 | 470 | 39.3 | Plus |
| par-1-PS | 827 | CG8201-PS | 252..504 | 8..274 | 362 | 35.2 | Plus |
