BS30109.complete Sequence
2675 bp assembled on 2012-10-05
GenBank Submission: KX805662
> BS30109.complete
GAAGTTATCAGTCGACATGGACGACACACAGCACTTCTGCCTGCGCTGGA
ACAACTACCAGAGCAGCATAACCTCGGCGTTCGAGAATCTGCGCGACGAC
GAGGCCTTCGTGGATGTGACCCTCGCCTGCGAGGGACGCAGCATCAAGGC
ACACCGCGTCGTCCTCTCCGCCTGCAGTCCCTACTTCCGCGAGCTGCTCA
AGAGCACACCCTGCAAACACCCGGTCATACTGCTGCAGGATGTCAACTTC
ATGGACCTGCACGCCCTGGTGGAGTTCATCTACCACGGCGAGGTCAACGT
GCACCAGAAGTCCCTGCAGTCCTTCCTTAAGACCGCCGAAGTGCTGCGCG
TCTCTGGACTCACGCAGCAGCAGGCAGAGGACACACACAGCCATCTGGCT
CAGATACAGAACCTGGCCAATTCCGGCGGCCGCACGCCGCTCAACACGCA
CACCCAATCGCTCCCACATCCGCACCATGGCTCGCTACACGACGACGGCG
GCTCCTCGACCCTCTTCAGCCGCCAGGGAGCGGGTTCGCCACCGCCGACG
GCGGTGCCATCGCTGCCCTCGCACATCAACAACCAGCTGCTGAAGCGCAT
GGCCATGATGCACCGCAGCAGTGCCGCCGCCGCCGCCGAGGAGACCTCCC
ACGCCTTTAAGCGTCTGCGCGGCTCGGACAACAGCCTGCCGCTGTCCGGC
GCCGTTGGCAGTGGCAGCAACAACAACAGCCCCGACTTGCCGCCGCTTCA
TGCGCGCAGCGCCTCGCCCCAGCAGACTCCGGCCGACTTCAGTACGATCA
AGCACCACAACAACAACAACACGCCGCCGCTGAAGGAGGAGAAGCGCAAC
GGACCCACAGGCAACGGAAACTCTGGCAACGGCAATGGCAATGGCAACGG
AGCGAGCAACGGCAACGGAATCTCCATCAGCGACAAGCTGGGCAGCCTCA
CACCTTCGCCGCTGGCTCGAGCGGGCGCCGATGATGTCAAGTCGGAGCCC
ATGGACATGGTCTGCTCTAACAACAATGCCAATGCCAACGACGAACACAG
CAACGACTCCACCGGCGAGCACGATGCCAATCGCTCCAGTAGCGGCGACG
GCGGCAAGGGATCCCTGAGCTCCGGCAACGACGAGGAGATCGGCGACGGA
CTCGCCTCCCATCATGCCGCCCCTCAGTTCATCATGTCGCCGGCGGAGAA
CAAGATGTTCCATGCAGCCGCCTTCAACTTTCCCAATATCGATCCCTCAG
CGTTGCTAGGTCTCAACACACAGTTGCAGCAGTCCGGTGACCTCGCCGTG
TCCCCTCAAGGTGGCAGCACCGGCAGCCTACTCAGTGGCGTCATTGTGCC
CGGCGGTAGTGGTGGCACCCCTAGTAATAGTAGTAGCAACAACAACAACA
ACAACAGCAACAATCAACAACAAAAAGTAGAACAACAGTCATCACCACAC
CAACTCCTCCAACAACAACATCATTCCACACCACATACCAACAGTCCACA
ACTGAAGCAGGAACAACCGAAATCGGGCGGCGGGAGCTGCAAGTCCAGCG
ACCTGCACATTGCAGCGGGTAGTGAGCGCAGCCTCTCCCGATCCTCCCAA
GGAATGCCAGACGCCGGCGGGCACAGTGCCACGCCCTCGCCCACCGCCGC
CTACCACAAGCGCGAGAGGGAGCGCGAAAGAGAACGCGAACGGGAGCGGG
AGCGCGAGCGGGAACGCTCGCTCGACCATGAGCGCGACTTGGAGAGGCCA
GGCGGCACCGGCTCACCACCACCGCCGCCGCCGTCGCACCACTCACATTT
CGGCCAGCACCCATTGTCGCTGTTGCCCAGCCACCACCAGCTGCACGCGA
CCCACCACGAGCTGAGCGCCGCTGCCGCCCACCACGCTCACGCCCATGCT
CATGCCGCCCACGCCCATGCCTTGGCACGCGCCGGATCGCCCATGGAGCA
CCATCACCTGTTGCACCACAGACGCGCCTCGCTCTCCCCCTCGGGGGCCG
TTTCCTCGGCCAGCGGAGCGGGTGGACGCGGAGGCGGCGCTGGCGGACCG
GGAGGACCCGGCGGCAGCCTGCTGTCATCAGTGCGCGCCCAGGACGTGGC
CCAGGCCAATAGACTCCTCCTGCCCCTGCCCCTCAACGCCTGCCACCGGT
GCGACGTGTGCGGCAAACTGTTGAGCACCAAGCTCACGCTGAAACGCCAC
AAGGAGCAGCAGCACCTGCAGCCGCTGAACAACGCCGTTTGCAACCTGTG
CCACAAGGTCTTCCGCACGCTGAACTCGCTGAACAACCACAAGAGCATCT
ATCATCGCCGCCAGAAGAACCACCACTCGTATTTCCACCACGGCGCCGGG
GTTAGCCAAGCGGGCAGTCCGGGCAGTCGGCTGCATCAGTCGCTCAGTTC
GTTGAGCGCAGCAGCAGCGGCGGCCAACAATAGCGTTAATGTGGGCGGTG
GATCGGTAGGCGGGGCCGGGGGCAATGCAGTGGCTGCTGCTGCAGCCGCA
GCTGCCGCGGCGGCCGAACTGCTTCTCTCTCCGATCGTTGGCGCCGCTGC
CGTGGCCGGGGGTACGGCCAGCTCCACGCTCCAGCTGGCGGCGGCGCACC
AGCAGCAGCAGCAACAGTCGTCGCCGGGCATTGTCAAACCGTGCATGGAC
TTCTTATAAAAGCTTTCTAGACCAT
BS30109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RQ | 2643 | CG11491-PQ | 1..2643 | 17..2659 | 13215 | 100 | Plus |
| br-RP | 3036 | CG11491-PP | 1..2643 | 17..2659 | 13215 | 100 | Plus |
| br-RI | 2643 | CG11491-PI | 1..2643 | 17..2659 | 13215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RQ | 4235 | CG11491-RQ | 923..3570 | 12..2659 | 13225 | 100 | Plus |
| br-RP | 4188 | CG11491-RP | 876..3523 | 12..2659 | 13225 | 100 | Plus |
| br-RI | 3981 | CG11491-RM | 669..3316 | 12..2659 | 13225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:35:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1647363..1648713 | 1309..2659 | 6755 | 100 | Plus |
| X | 23542271 | X | 1636096..1636550 | 392..846 | 2275 | 100 | Plus |
| X | 23542271 | X | 1636639..1636912 | 846..1119 | 1370 | 100 | Plus |
| X | 23542271 | X | 1635830..1636020 | 201..391 | 955 | 100 | Plus |
| X | 23542271 | X | 1624517..1624707 | 12..202 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1636998..1637141 | 1118..1261 | 720 | 100 | Plus |
| X | 23542271 | X | 1637280..1637337 | 1256..1313 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:35:56 has no hits.
BS30109.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-05 11:23:58 Download gff for
BS30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RH | 676..3316 | 17..2657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:32 Download gff for
BS30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RI | 674..3314 | 17..2657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:34 Download gff for
BS30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RI | 674..3314 | 17..2657 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:34 Download gff for
BS30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1636639..1636912 | 846..1119 | 100 | -> | Plus |
| X | 1637000..1637139 | 1120..1259 | 100 | -> | Plus |
| X | 1637284..1637334 | 1260..1310 | 100 | -> | Plus |
| X | 1647365..1648711 | 1311..2657 | 100 | | Plus |
| X | 1624522..1624707 | 17..202 | 100 | -> | Plus |
| X | 1635832..1636020 | 203..391 | 100 | -> | Plus |
| X | 1636096..1636549 | 392..845 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:32 Download gff for
BS30109.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1518555..1518740 | 17..202 | 100 | -> | Plus |
| arm_X | 1529865..1530053 | 203..391 | 100 | -> | Plus |
| arm_X | 1530129..1530582 | 392..845 | 100 | -> | Plus |
| arm_X | 1530672..1530945 | 846..1119 | 100 | -> | Plus |
| arm_X | 1531033..1531172 | 1120..1259 | 100 | -> | Plus |
| arm_X | 1531317..1531367 | 1260..1310 | 100 | -> | Plus |
| arm_X | 1541398..1542744 | 1311..2657 | 100 | | Plus |
BS30109.pep Sequence
Translation from 16 to 2658
> BS30109.pep
MDDTQHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVL
SACSPYFRELLKSTPCKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSL
QSFLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPLNTHTQSLP
HPHHGSLHDDGGSSTLFSRQGAGSPPPTAVPSLPSHINNQLLKRMAMMHR
SSAAAAAEETSHAFKRLRGSDNSLPLSGAVGSGSNNNSPDLPPLHARSAS
PQQTPADFSTIKHHNNNNTPPLKEEKRNGPTGNGNSGNGNGNGNGASNGN
GISISDKLGSLTPSPLARAGADDVKSEPMDMVCSNNNANANDEHSNDSTG
EHDANRSSSGDGGKGSLSSGNDEEIGDGLASHHAAPQFIMSPAENKMFHA
AAFNFPNIDPSALLGLNTQLQQSGDLAVSPQGGSTGSLLSGVIVPGGSGG
TPSNSSSNNNNNNSNNQQQKVEQQSSPHQLLQQQHHSTPHTNSPQLKQEQ
PKSGGGSCKSSDLHIAAGSERSLSRSSQGMPDAGGHSATPSPTAAYHKRE
RERERERERERERERERSLDHERDLERPGGTGSPPPPPPSHHSHFGQHPL
SLLPSHHQLHATHHELSAAAAHHAHAHAHAAHAHALARAGSPMEHHHLLH
HRRASLSPSGAVSSASGAGGRGGGAGGPGGPGGSLLSSVRAQDVAQANRL
LLPLPLNACHRCDVCGKLLSTKLTLKRHKEQQHLQPLNNAVCNLCHKVFR
TLNSLNNHKSIYHRRQKNHHSYFHHGAGVSQAGSPGSRLHQSLSSLSAAA
AAANNSVNVGGGSVGGAGGNAVAAAAAAAAAAAELLLSPIVGAAAVAGGT
ASSTLQLAAAHQQQQQQSSPGIVKPCMDFL*
BS30109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-PQ | 880 | CG11491-PQ | 1..880 | 1..880 | 4630 | 100 | Plus |
| br-PP | 1011 | CG11491-PP | 1..880 | 1..880 | 4630 | 100 | Plus |
| br-PI | 880 | CG11491-PM | 1..880 | 1..880 | 4630 | 100 | Plus |
| br-PH | 880 | CG11491-PL | 1..880 | 1..880 | 4630 | 100 | Plus |
| br-PB | 880 | CG11491-PB | 1..880 | 1..880 | 4630 | 100 | Plus |
