BS30111.complete Sequence
2696 bp assembled on 2013-01-14
GenBank Submission: KX804442
> BS30111.complete
GAAGTTATCAGTCGACATGGACAATCCCAGTTCACCACCGCCAAATACGC
CCAGCGATGCCGCCGAACGCCGCGATCTGCGGGCAGCAATGACGTCGCCG
GTTGGCGACTTTGAGCCGTTCGAGAACGAGGACGAGATCCTGGGAGATCA
GACCGTTCGCGATGAGGCCGAGGAGGAGGATGGCGAGGAGCTGTTCGGGG
ACAACATGGAGAACGATTACCGGCCCATGCCTGAGCTGGATCACTACGAT
CCGGCGCTGCTGGACGACGAGGATGACTTCTCGGAGATGTCCCAGGGCGA
TCGCTTTGCCGCCGAGTCGGAGATGCGTCGACGCGACCGGGCCGCCGGAA
TCCACCGCGACGATCGTGATCTGGGTTTCGGTCAGTCCGATGATGAGGAC
GACGTTGGACCCCGGGCCAAGAGACGAGCTGGCGAGAAGGCAGCTGTTGG
CGAGGTAGAGGACACCGAGATGGTGGAGTCTATTGAAAACCTGGAGGATA
CCAAGGGACACTCAACTAAAGAGTGGGTCAGTATGCTAGGACCACGCACG
GAAATCGCCAATCGCTTTCAATCCTTTTTGAGAACTTTTGTGGATGAAAG
GGGCGCATACACCTATCGTGATCGCATACGTCGGATGTGCGAGCAGAACA
TGTCTTCGTTCGTCGTCTCCTACACTGATCTGGCCAACAAGGAACACGTA
TTGGCCTATTTCCTGCCCGAGGCTCCCTTTCAAATGCTCGAGATTTTCGA
TAAAGTGGCTAAGGACATGGTGCTCTCCATTTTCCCCACTTACGAACGTG
TCACCACAGAGATTCACGTGCGCATCTCGGAGCTGCCGCTGATCGAGGAG
CTGCGCACATTCAGAAAACTGCATCTGAACCAGTTGGTTCGCACTTTGGG
CGTGGTAACTGCCACCACCGGAGTTCTTCCCCAGCTATCCGTGATCAAGT
ACGACTGCGTTAAGTGCGGCTATGTGCTGGGTCCCTTCGTTCAGTCGCAA
AATACGGAGATAAAGCCCGGTTCCTGCCCAGAGTGCCAGAGCACTGGACC
CTTCTCAATCAACATGGAGCAGACGTTGTATCGAAATTATCAAAAGATCA
CGTTGCAGGAGTCGCCAGGCAGGATTCCAGCCGGACGCATTCCTCGCAGC
AAGGATGTCATTTTGCTCGCTGATTTGTGTGATCAATGCAAGCCTGGAGA
TGAACTTGAGGTCACAGGTATATATACCAATAACTACGATGGCTCCTTGA
ACACCGACCAAGGATTTCCCGTGTTTGCCACCGTGATTATTGCCAATCAT
GTGGTTGTAAAGGACTCCAAGCAGGTAGTGCAGTCGCTTACGGACGAGGA
CATTGCCACCATTCAGAAGTTGAGCAAGGATCCGCGTATCGTAGAGCGTG
TAGTAGCATCCATGGCGCCTTCTATATACGGACATGATTATATCAAGAGG
GCGCTGGCCTTAGCTCTCTTTGGGGGTGAGTCAAAGAATCCCGGTGAGAA
ACACAAGGTTAGAGGTGATATAAACCTACTCATCTGTGGAGATCCCGGAA
CGGCAAAGTCGCAGTTCCTCAAGTACACCGAAAAGGTTGCGCCACGTGCG
GTTTTCACGACTGGGCAGGGAGCCAGTGCCGTGGGTCTCACGGCTTATGT
GCGCCGCAATCCAGTATCTCGGGAGTGGACATTGGAAGCGGGTGCTCTGG
TTCTGGCTGATCAGGGAGTTTGTCTAATCGACGAGTTCGACAAAATGAAC
GACCAGGATCGTACCTCTATTCACGAAGCCATGGAGCAGCAGTCTATTTC
GATTTCCAAGGCTGGTATTGTCACCTCTCTTCAAGCTCGTTGCACCGTGA
TTGCTGCTGCCAATCCCATTGGCGGTCGCTATGATCCGTCGATGACCTTC
TCGGAGAACGTGAATCTCTCGGAGCCCATCCTGTCCCGTTTCGATGTGCT
GTGCGTGGTGAAGGACGAATTTGACCCCATGCAGGATCAGCAGCTCGCCA
AATTCGTGGTACACTCGCATATGAAGCATCACCCGAGTGAGGAGGAGCAG
CCGGAGTTGGAGGAACCACAGCTGAAGACCGTTGATGAGATCCCGCAGGA
CTTGTTGCGACAATACATTGTATACGCTAAGGAGAACATTCGGCCCAAGC
TAACGAACATCGACGAGGACAAGATCGCCAAGATGTACGCCCAGCTGCGA
CAGGAGTCTTTTGCCACGGGCTCACTGCCCATTACGGTGCGTCACATTGA
GAGTGTCATCCGAATGTCCGAAGCGCACGCGCGGATGCATCTGCGCGAAA
ACGTAATGGAGGCAGATGTCAGCATGGCCATCCGCATGATGTTGGAGAGC
TTTATCGAGGCGCAGAAGTTCAGCGTTATGAAGAAGATGCGCAGCACATT
CCAGAAGTACCTGTCCTTCCAAAAGGACCATTCCGAGCTGCTGTTCTTTA
TTCTGCGACAGCTGACGCTCGACCAGCTCGCCTACATTCGCTGCAAGGAC
GGGCCTGGCGCCACACATGTGGAGATTATGGAGCGGGATTTGATCGAACG
GGCTAAGCAGCTGGATATTGTAAACCTGAAGCCGTTCTACGAATCAGATC
TGTTTCGCACAAATGGCTTCTCTTACGATCCCAAGCGACGCATCATCCTT
CAAATTGTGGTCGACGGCAACACAGCTTAAAAGCTTTCTAGACCAT
BS30111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm2-RA | 2664 | CG7538-PA | 1..2664 | 17..2680 | 13320 | 100 | Plus |
| Mcm7-RA | 2163 | CG4978-PA | 1281..1406 | 1678..1803 | 240 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm2-RA | 2898 | CG7538-RA | 132..2795 | 17..2680 | 13320 | 100 | Plus |
| Mcm7-RA | 2451 | CG4978-RA | 1434..1559 | 1678..1803 | 240 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8265101..8267239 | 17..2155 | 10695 | 100 | Plus |
| 3R | 32079331 | 3R | 8267296..8267821 | 2155..2680 | 2630 | 100 | Plus |
| 3L | 28110227 | 3L | 8893231..8893356 | 1678..1803 | 240 | 79.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:06:49 has no hits.
BS30111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:38 Download gff for
BS30111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm2-RA | 259..2920 | 17..2678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:59 Download gff for
BS30111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm2-RA | 132..2793 | 17..2678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:27 Download gff for
BS30111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm2-RA | 132..2793 | 17..2678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:27 Download gff for
BS30111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8265101..8267239 | 17..2155 | 100 | -> | Plus |
| 3R | 8267297..8267819 | 2156..2678 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:59 Download gff for
BS30111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4090823..4092961 | 17..2155 | 100 | -> | Plus |
| arm_3R | 4093019..4093541 | 2156..2678 | 100 | | Plus |
BS30111.pep Sequence
Translation from 16 to 2679
> BS30111.pep
MDNPSSPPPNTPSDAAERRDLRAAMTSPVGDFEPFENEDEILGDQTVRDE
AEEEDGEELFGDNMENDYRPMPELDHYDPALLDDEDDFSEMSQGDRFAAE
SEMRRRDRAAGIHRDDRDLGFGQSDDEDDVGPRAKRRAGEKAAVGEVEDT
EMVESIENLEDTKGHSTKEWVSMLGPRTEIANRFQSFLRTFVDERGAYTY
RDRIRRMCEQNMSSFVVSYTDLANKEHVLAYFLPEAPFQMLEIFDKVAKD
MVLSIFPTYERVTTEIHVRISELPLIEELRTFRKLHLNQLVRTLGVVTAT
TGVLPQLSVIKYDCVKCGYVLGPFVQSQNTEIKPGSCPECQSTGPFSINM
EQTLYRNYQKITLQESPGRIPAGRIPRSKDVILLADLCDQCKPGDELEVT
GIYTNNYDGSLNTDQGFPVFATVIIANHVVVKDSKQVVQSLTDEDIATIQ
KLSKDPRIVERVVASMAPSIYGHDYIKRALALALFGGESKNPGEKHKVRG
DINLLICGDPGTAKSQFLKYTEKVAPRAVFTTGQGASAVGLTAYVRRNPV
SREWTLEAGALVLADQGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAG
IVTSLQARCTVIAAANPIGGRYDPSMTFSENVNLSEPILSRFDVLCVVKD
EFDPMQDQQLAKFVVHSHMKHHPSEEEQPELEEPQLKTVDEIPQDLLRQY
IVYAKENIRPKLTNIDEDKIAKMYAQLRQESFATGSLPITVRHIESVIRM
SEAHARMHLRENVMEADVSMAIRMMLESFIEAQKFSVMKKMRSTFQKYLS
FQKDHSELLFFILRQLTLDQLAYIRCKDGPGATHVEIMERDLIERAKQLD
IVNLKPFYESDLFRTNGFSYDPKRRIILQIVVDGNTA*
BS30111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm2-PA | 887 | CG7538-PA | 1..887 | 1..887 | 4571 | 100 | Plus |
| Mcm5-PA | 733 | CG4082-PA | 30..650 | 180..782 | 878 | 34.2 | Plus |
| Mcm3-PB | 818 | CG4206-PB | 22..642 | 193..775 | 812 | 34.6 | Plus |
| Mcm3-PA | 819 | CG4206-PA | 22..643 | 193..775 | 810 | 34.9 | Plus |
| Mcm7-PA | 720 | CG4978-PA | 10..669 | 177..816 | 807 | 31.9 | Plus |
