BS30119.complete Sequence
2990 bp assembled on 2012-09-25
GenBank Submission: KX800312
> BS30119.complete
GAAGTTATCAGTCGACATGCACAGCTCCCAGCAGCCGGCGGAGCGTCTGC
CGCTCACCAAGGGCCGCACCGTGAACGGTCTGGTCAAGCGCTTGTCAATG
GAGCGCTTCTCCCCGCAGCCGGCGATCAGCCAGCCGGCCTTTTCTTACAT
TCGGCCCAACGAGGGCATCACATATGCCCAGCTGGATCTGGGCGAGGATC
AAGTCCGACGATCGCCAATGGACCGAGATGTCCGCACACCCCAGAGGGAG
TTCGCTCCTGCTCGGCCGCCGAGGGCCAGCGATGTGAGGCCCAGTTACTC
GCCCACATCCAATGGCGCTCCTTTGGCCAGCAGGCCCAGTCATTCGCCTT
CGCCATGGCAGCAGCTGAGTCCCCGCAATCTAAGCGACGAGGACGAGGGC
TTGGGTTACGAGCCCAGGAAGGTATACTATGAGGAGGAGTTCCCCCGAAG
GTCGGAACCTCCCATTGTGCCCGTCATCAGGAGTGTCAGCCCCTCGCCCT
ACTTGGACGAGTTGGGCCATCGACGAGCTCAGCTGGAGACGCGTATCCTG
ACTCGGCGGTTCGGGGAGGGTGCCACCCTGGAACGCCAGGCGGACAGAAA
TCGGGAAGTGGGCAGACCCACTCCGGAGCGGGAGCCAGAGCGCTTCCACC
GACCTGTGCGCCAGGAGCTGTCCAACGAGTTTCCGCCAGAGCGTACCCAA
GTGGACAGTGGCTCCACGCTGCCCAGGATGGAGAAAACCTCTCGCTACCG
ACACACCAAGTACTACGACGACGGACACGGAGGCGTCAAGGAGACCTATG
TGCGGGAAACCCAGAGGGATGGACAGGTGCGGGAGTCGCGGCATCGCGAG
CGCATCGGCGAACGGGAGCGGGACTACAACTCGGCAGATCGGCTGGAGCA
GGAGCCGAAGAGCCTTGACTCTCAGTTGACGGATCAGTACCGATCCTCGC
CAGAACTGCGCTCCCAGCAAACCCAGCAGCGGGAGCAGCGGGAGGACTAC
TGGCAGAGCAGCTTGAAGCGGGACAAGCTGCAGCAGCGCAGCTTCGACAA
GGGTGACTCTGGCATTGAGAACGATTTCCGGAAGGAGTCCTTCAACGGAG
ACTTAACAACAAGATGGCGCAAACGCACTGTCCTCGATGACATAAGGGCC
TGTGAGTCGTTCCTGCGCAAGGAGCGTCGGGATAGCGCCCAACAGCGCCA
ATTCCAGCGGCAGGCGGTACCGTCGCGCCTGCGTCGCGAGCACAGCTACG
TTTACAGGGAGCGATCCATCGATGATGGCTCGCACTTCGATCCGCATCTG
GACAAGTACCCAGTGGCCACCAGCACGCTGCGTCGTCGGGAGCAGCACTC
CACGTCCCACAGTCAATCCCAGACCCCGAAGAGCGAGGACTCCAGCACCC
TGAAGCGGAACAAGAAGCTGGGTGGCTTCGAAAAGGTCAAGCAGCTGTTC
ACGGGCTCCGGCGGAGGCGTCAGCAATGGAGGCAGTGGACGCAGCAGCGG
CAGCAACGTCTCCAGTGGCAAAAAGGAGCAGATGAGCAACGGCAACAGCA
GCACTTTGAGTCGCCGCGACAAGGACAAGGAGCGGGAGAAGGAACGGGAG
AGGGAGCGCTACATGGTCAGAGAGGAGGAGATGCGGTCACGCTACCGCGA
GCATCACACCTCCGCACAGGAGACCTCACGCGAACCAAAGACTATCGATA
TCTCGCTGCGACGCCGACTGTCCACGCCCAAAGCTAGTCCCCTGCTGGTG
AAGCGCAGTCCAGCGGACAAACCGCCCAAAAAGCATTTGAAGCCGAAGGA
GTCGGCACCCGCGAAGGTCGAGAAGACTAGCTGGTTCAGATCGCTGGACC
GCCGGGCCAAGAGCAGTCCCAAGGAGCTCAATGTATCCGTGAACGGACAC
AGTGAGACCACATCGAGCTTAAAGCGGACCAAACGCAATACGACAGCTGC
TCCAGCCAAGAATCTGCGCTTCTTTGGCGACACTGATCTGGACTCGAATC
CGCCAACCATTTCCAAGGCCTCCAGCATGCCCAGGAGCCGTCCACCGCTG
GGTCAGTCGAAGCACTCGCAGAGTGCCTACCACCTGGACCGCAGTCCTCC
TCCACCAGCCCGGGATTATCGTCACTCGTTGGCTGGCCAGCCTGAAGGCC
ACAATAGAAATGGTACCAGCCGTCAGCGGGCTAGCTCCATGCAGCACCTG
GACAACGGCAGCGACGAGGTGGATTTCCGGAAGAGGCGCCACTACTCACG
CTCCCGCGAGCTGCACGACATCTCGGAGAGCGGCTCGGAACCAGAGCCTA
CGGAGCGACATAAGAGAAGCAGCACGGCGGGACATCGAGCCATGTCGCTG
GAGAGAACAGTGGATGGACCGCGTGGCCAGCGCATCGAAGATCGTCCGCT
CCTGGGACCACCAAAGCCGGCAAGGAGTGCCGAGCGCCGCGGACTGCTCA
ACAGTTTGGGCCAGGAGAATGTCGGCTACGGCAGGGATCGCTATCCAGCG
GAGAGTTCTGGCACTGAAGGCGAGTCCAGTTTGCATAGCCAGCGCAGCGT
AGTCTACCTGCATGCCACCACGGTGGGCGACATTCCACAGCCATACAATC
TGCGCCGGAGGTCCATGTCGCGCGATGACCTTCGCAAGGGCAAGCAACAG
GCACCCCAGCATCCGCCGCCCCTCCAGCCCATGACCCGTACCGTTTCCAG
GTCCGTCTCCATGCTGGCCCCCTGGAAGCCCAAACACATCAGCGAGGGCT
ACGAGATCAACTACTCACAGGAGCAAAACAAGCGGATGTCCACACTGCCG
AGGAAGCCACCACCACACAATGGAGCCACCAGTGCCAGCACCCTGAGCCG
GACTGGCCGCAAGAACGACTCTTCCACGCCGACGCGGCGTTACCACATGG
ACAGCCTGGAGCGCCCGCCACCACCGCGGTCGGTGCTCTCTGCATCGAAT
TTGCGCAGCGCCAGGGCGAAATGAAAGCTTTCTAGACCAT
BS30119.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8740-RE | 3774 | CG8740-PE | 815..3774 | 15..2974 | 14800 | 100 | Plus |
| CG8740-RD | 3810 | CG8740-PD | 851..3810 | 15..2974 | 14800 | 100 | Plus |
| CG8740-RA | 2958 | CG8740-PA | 1..2958 | 17..2974 | 14790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8740-RE | 4882 | CG8740-RE | 1633..4593 | 15..2975 | 14805 | 100 | Plus |
| CG8740-RD | 4918 | CG8740-RD | 1669..4629 | 15..2975 | 14805 | 100 | Plus |
| CG8740-RA | 4136 | CG8740-RA | 887..3847 | 15..2975 | 14805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8753153..8754251 | 15..1113 | 5495 | 100 | Plus |
| 2R | 25286936 | 2R | 8754355..8754933 | 1112..1690 | 2895 | 100 | Plus |
| 2R | 25286936 | 2R | 8757796..8758249 | 2032..2485 | 2270 | 100 | Plus |
| 2R | 25286936 | 2R | 8758310..8758614 | 2481..2785 | 1525 | 100 | Plus |
| 2R | 25286936 | 2R | 8759111..8759301 | 2785..2975 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 8757330..8757521 | 1685..1876 | 945 | 99.5 | Plus |
| 2R | 25286936 | 2R | 8757577..8757737 | 1875..2035 | 805 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1046..1122 | 1474..1553 | 140 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6852 | 1471..1553 | 136 | 62.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1143 | 1471..1553 | 128 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6816 | 1491..1553 | 127 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2288..2416 | 1418..1553 | 122 | 58.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3301 | 1492..1553 | 121 | 66.1 | Plus |
BS30119.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:23 Download gff for
BS30119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8740-RA | 876..3832 | 17..2973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:33 Download gff for
BS30119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8740-RA | 889..3845 | 17..2973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:57 Download gff for
BS30119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8740-RA | 889..3845 | 17..2973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:57 Download gff for
BS30119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8753155..8754251 | 17..1113 | 100 | -> | Plus |
| 2R | 8754357..8754933 | 1114..1690 | 100 | -> | Plus |
| 2R | 8757336..8757521 | 1691..1876 | 100 | -> | Plus |
| 2R | 8757579..8757736 | 1877..2034 | 100 | -> | Plus |
| 2R | 8757799..8758248 | 2035..2484 | 100 | -> | Plus |
| 2R | 8758314..8758614 | 2485..2785 | 100 | -> | Plus |
| 2R | 8759112..8759299 | 2786..2973 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:33 Download gff for
BS30119.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4640660..4641756 | 17..1113 | 100 | -> | Plus |
| arm_2R | 4641862..4642438 | 1114..1690 | 100 | -> | Plus |
| arm_2R | 4644841..4645026 | 1691..1876 | 100 | -> | Plus |
| arm_2R | 4645084..4645241 | 1877..2034 | 100 | -> | Plus |
| arm_2R | 4645304..4645753 | 2035..2484 | 100 | -> | Plus |
| arm_2R | 4645819..4646119 | 2485..2785 | 100 | -> | Plus |
| arm_2R | 4646617..4646804 | 2786..2973 | 100 | | Plus |
BS30119.pep Sequence
Translation from 16 to 2973
> BS30119.pep
MHSSQQPAERLPLTKGRTVNGLVKRLSMERFSPQPAISQPAFSYIRPNEG
ITYAQLDLGEDQVRRSPMDRDVRTPQREFAPARPPRASDVRPSYSPTSNG
APLASRPSHSPSPWQQLSPRNLSDEDEGLGYEPRKVYYEEEFPRRSEPPI
VPVIRSVSPSPYLDELGHRRAQLETRILTRRFGEGATLERQADRNREVGR
PTPEREPERFHRPVRQELSNEFPPERTQVDSGSTLPRMEKTSRYRHTKYY
DDGHGGVKETYVRETQRDGQVRESRHRERIGERERDYNSADRLEQEPKSL
DSQLTDQYRSSPELRSQQTQQREQREDYWQSSLKRDKLQQRSFDKGDSGI
ENDFRKESFNGDLTTRWRKRTVLDDIRACESFLRKERRDSAQQRQFQRQA
VPSRLRREHSYVYRERSIDDGSHFDPHLDKYPVATSTLRRREQHSTSHSQ
SQTPKSEDSSTLKRNKKLGGFEKVKQLFTGSGGGVSNGGSGRSSGSNVSS
GKKEQMSNGNSSTLSRRDKDKEREKERERERYMVREEEMRSRYREHHTSA
QETSREPKTIDISLRRRLSTPKASPLLVKRSPADKPPKKHLKPKESAPAK
VEKTSWFRSLDRRAKSSPKELNVSVNGHSETTSSLKRTKRNTTAAPAKNL
RFFGDTDLDSNPPTISKASSMPRSRPPLGQSKHSQSAYHLDRSPPPPARD
YRHSLAGQPEGHNRNGTSRQRASSMQHLDNGSDEVDFRKRRHYSRSRELH
DISESGSEPEPTERHKRSSTAGHRAMSLERTVDGPRGQRIEDRPLLGPPK
PARSAERRGLLNSLGQENVGYGRDRYPAESSGTEGESSLHSQRSVVYLHA
TTVGDIPQPYNLRRRSMSRDDLRKGKQQAPQHPPPLQPMTRTVSRSVSML
APWKPKHISEGYEINYSQEQNKRMSTLPRKPPPHNGATSASTLSRTGRKN
DSSTPTRRYHMDSLERPPPPRSVLSASNLRSARAK*
BS30119.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8740-PE | 1257 | CG8740-PE | 273..1257 | 1..985 | 5146 | 100 | Plus |
| CG8740-PD | 1269 | CG8740-PD | 285..1269 | 1..985 | 5146 | 100 | Plus |
| CG8740-PA | 985 | CG8740-PA | 1..985 | 1..985 | 5146 | 100 | Plus |
| CG8740-PC | 985 | CG8740-PC | 1..985 | 1..985 | 5146 | 100 | Plus |
| CG8740-PB | 985 | CG8740-PB | 1..985 | 1..985 | 5146 | 100 | Plus |
