BS30122.complete Sequence
3068 bp assembled on 2012-10-15
GenBank Submission: KX804146
> BS30122.complete
GAAGTTATCAGTCGACATGGTTACATATCACTTTCGGTCAAGCCTAACTC
AGTTTAGTGTGCCACAGCTCGAAGCGCCAAGTGGCGAAAGTGCAAAGCGC
AGCAAAGTGCGAAAAGAAGGCAACAAGTCGAATATGAACACAAACAGTCC
CAGCAAAAATGTGACTGTGAAATCGTCACAGCTATATAGGTATATAGCGC
CCAGGAACCGATCCATGCTTGTCATGAAGGATCCACGGAGCATGCGAACC
TTACGACGAATGCCAAAACCTGGAAGCAATGAAATGGGAACAACCAGTGA
CTGCGCTGCGAGTTTGTCACAGCAAATAAAGGCGGTCTCCAGTCCAACGC
TGTCCGAGCCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGTACG
GATGTGGCCAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGTATT
GCAGAAATTCAAACGCACCTTGAACAACTTTAACAACAAAAATCAATTGC
ACATCTCTCCGCTATCACCAGCGGCAGTAGGTAACAATGCCCCAAAAACT
AAGACATCGCCAACAACAACAACCGCATCCATAGCACCTATGATAACGAC
GACCACAGCTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCAGGAA
AATACCGGTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAG
ACGAAGTACAACCGACGCGACAAGTGTAATTCTGGTGATTCAGGCATACA
GATCGAACTAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGA
GCCGCCAGGATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGT
GTCGCGCTCTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGC
GAGCAGCATCCTTGGGCCCTTTATTGTTAAAACCAAAATAGCCAAGCACT
TAAACATTGGAGAGTCTGACAAAGCCGAGCGCAAAGCGCCCGAGTCTCTA
CCCACGCGATCGCTTAGCCAACCGAACGGCCTAGAGTCCTACGGTATGGG
TCGTCCCGATCTTGAGGATAGCGACAGCGATAGTGTCGCGTCAAACGAGG
AAGCTATAAGCTTCTACCCAACCACCTATGCGGAGGTGCTTTACAACTTC
ACGGCCGGCGGTCCTCAAGAACTAGGGCTAGAGAGAGGAATGCTTATTGA
AATACTGCGCAAGGAAGTTGGACCCTGGTGGTTCGGCCGAATTAAGAAGG
AGGAAACCAATCTGGTGGAAGACATATTGGGTCCTGAGCTGGGCTGGTTC
CCCAAGGAGTTTGTGCGCATTATTCACTGTCCAGAGACGGACAATTTCTT
TATAGCGCACAGGGCTGCCGCTGATGAGGCGGCGGCTGAGGAAGCCACTG
CTCGTGCAGAGGAAGGGTCTGTTCCTGTTCCCGTTGCGGCATTTGCCGAG
GACACAGACGTTACCGTCACCACAGACCAAAGCAACGTCACCCTTATAGT
CATTGAATCACCACCAACTCCGAGTGCACCCAGTGTGGACTTTGTTGCCC
AACCGGATCACAGCACGATCATACGCCGCAGTGCCGTTCGCGAACTGCTT
GATACGGAGGTCAATTATGTAAAGCTGCTAGCAGCCATTTGTGATGGTTA
CCTGCCAGCTATGAGCAAGCGAATCGATATATTTTCGCCAAACAGTATTC
GGCTTATCTTCTCCAACATAACGGCCATTTATAAGTTTCAGCGAAAGTTT
CTTGAAGCCTTACGACGAGGCATCGAGCAAAACCAAGTTGCCAAAGTTTT
CCTCAAAATGCACAAAGGTTTCCTTTGCTACTCCACCTATTGTAACGCAT
ACCCTCGAGCCCTGATAGAACTTGAGACCTACGATCGCGTAAAAGACGCC
CGTACAATTCTTGAGAACTGTCGCGAATCCCAAAACCTGGCCGAGCTGCC
CCTCTCTGCGCACCTGCTGGCACCTGTGCAACGAATCTGCCGCTATCCCC
TGCACCTCAACGAGATTATTAAGTCGGCATTGGAAAAGGGAGCCAAGGAA
GGGAACGATACAGACGGTGCGAAGTCAGCTGGCAAGACAACTGACTATGA
GCAACTCGATGTTACTGAACTAGACATACCCGACTCTCAAGATACTGTCA
ATTTGGCGCTGGAAGCGATGCGCGGCATCACAGAAGCAGTCAATGAGGGC
AAGCGCCACAGCGAGACGATTGCAAGGCATCAAGCCAGCTTCCAAAACTT
TAAGGGCCCGCCGCTGCACTTGCATAGTGCTCGCTTCTTCCTGCAAGTCG
ATGCCACGCGGCAGAAACAGAATCTGTGGAACAGCAGCTATACTCTGTTT
CTTTTTGATAACCAGCTCGTTTACTGCAAGCGAGATATTATTAAGCGGAG
CCACTTCATCTACAAAGGACGCATTTTTCTCGATCGCTGTCGCGTGGTAA
ACGTGAGGGATGGAAAAATGTTTGGGCACACCATTAAGAACTCCCTACGC
ATATATAGCGAGTCTCGAGACAAATGGTACGATTTTAGTTTCCGTTCGGC
GAACCGCAAGCATCGCTTCCTAAGCACTCTCGCCCTGGAGCGCCAGTTTG
GTGGTAAAGCTCTATACGTATCAGAGATGACTGGATTCGAGTACAATTAC
GAGGAGCGGCCGGGCGATTACTCAGACCAATCAGATTACGATGCACAAGA
TTTTGAATTAGCAACTGGGGTCACCAGTGGTGAGAGCTCACTGCCGGAGT
CGCCGGCCAAATCTACGTCTCGCCTGTGTGAGACACTGCCAAAAAAATCT
CAGTCCAGGGACGGAATATCCAGCGCTGAAAACTCTCAAATAGTCACTAC
CACATCGACAGGTTCGCTAGGAAGGCGGCATTTTGGCAATTGGTTCCGCA
AGCCAAAGAGCGCAAACTGCACTCCAAGTCAATCACCGACGCATAAGCCA
AGCTTCGACGCAGACGCTACGCTCACGGAAGCCCGGGTTGCTGCGATGGA
ACTGGCTGAAGCCGCGGCCGCACTAGTGCCAACGGACAGCTCCTCAGCGT
AAAAGCTTTCTAGACCAT
BS30122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RF | 3036 | CG43976-PF | 1..3036 | 17..3052 | 15180 | 100 | Plus |
| RhoGEF3-RA | 3036 | CG43976-PA | 1..3036 | 17..3052 | 15180 | 100 | Plus |
| RhoGEF3-RM | 10557 | CG43976-PM | 7763..10557 | 258..3052 | 13975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RF | 3564 | CG43976-RF | 97..3133 | 17..3053 | 15185 | 100 | Plus |
| RhoGEF3-RA | 4541 | CG43976-RA | 97..3133 | 17..3053 | 15185 | 100 | Plus |
| RhoGEF3-RM | 12307 | CG43976-RM | 8104..10899 | 258..3053 | 13980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:38:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 302749..303884 | 1918..3053 | 5680 | 100 | Plus |
| 3L | 28110227 | 3L | 300894..301681 | 316..1103 | 3940 | 100 | Plus |
| 3L | 28110227 | 3L | 301756..302301 | 1102..1647 | 2730 | 100 | Plus |
| 3L | 28110227 | 3L | 297898..298139 | 17..258 | 1210 | 100 | Plus |
| 3L | 28110227 | 3L | 302359..302522 | 1647..1810 | 820 | 100 | Plus |
| 3L | 28110227 | 3L | 302584..302691 | 1810..1917 | 540 | 100 | Plus |
| 3L | 28110227 | 3L | 298958..299016 | 258..316 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:38:32 has no hits.
BS30122.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:14 Download gff for
BS30122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RF | 76..3109 | 17..3050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:05 Download gff for
BS30122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RA | 97..3130 | 17..3050 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:40 Download gff for
BS30122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RA | 97..3130 | 17..3050 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:40 Download gff for
BS30122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 302585..302691 | 1811..1917 | 100 | -> | Plus |
| 3L | 297898..298139 | 17..258 | 100 | -> | Plus |
| 3L | 298959..299016 | 259..316 | 100 | -> | Plus |
| 3L | 300895..301681 | 317..1103 | 100 | -> | Plus |
| 3L | 301758..302301 | 1104..1647 | 100 | -> | Plus |
| 3L | 302360..302522 | 1648..1810 | 100 | -> | Plus |
| 3L | 302749..303881 | 1918..3050 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:05 Download gff for
BS30122.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 302585..302691 | 1811..1917 | 100 | -> | Plus |
| arm_3L | 297898..298139 | 17..258 | 100 | -> | Plus |
| arm_3L | 298959..299016 | 259..316 | 100 | -> | Plus |
| arm_3L | 300895..301681 | 317..1103 | 100 | -> | Plus |
| arm_3L | 301758..302301 | 1104..1647 | 100 | -> | Plus |
| arm_3L | 302360..302522 | 1648..1810 | 100 | -> | Plus |
| arm_3L | 302749..303881 | 1918..3050 | 100 | | Plus |
BS30122.pep Sequence
Translation from 16 to 3051
> BS30122.pep
MVTYHFRSSLTQFSVPQLEAPSGESAKRSKVRKEGNKSNMNTNSPSKNVT
VKSSQLYRYIAPRNRSMLVMKDPRSMRTLRRMPKPGSNEMGTTSDCAASL
SQQIKAVSSPTLSEPCLEEQPQKGTESTDVANTGSSAGSGGLGVLQKFKR
TLNNFNNKNQLHISPLSPAAVGNNAPKTKTSPTTTTASIAPMITTTTASD
PGSEAGDTSSGKYRFGPLIWRSSKERRKTKYNRRDKCNSGDSGIQIELEQ
DEQYSRATMAVSRQDEPRAFALTNGSCGVALSKMRAIRRTNSAKASSILG
PFIVKTKIAKHLNIGESDKAERKAPESLPTRSLSQPNGLESYGMGRPDLE
DSDSDSVASNEEAISFYPTTYAEVLYNFTAGGPQELGLERGMLIEILRKE
VGPWWFGRIKKEETNLVEDILGPELGWFPKEFVRIIHCPETDNFFIAHRA
AADEAAAEEATARAEEGSVPVPVAAFAEDTDVTVTTDQSNVTLIVIESPP
TPSAPSVDFVAQPDHSTIIRRSAVRELLDTEVNYVKLLAAICDGYLPAMS
KRIDIFSPNSIRLIFSNITAIYKFQRKFLEALRRGIEQNQVAKVFLKMHK
GFLCYSTYCNAYPRALIELETYDRVKDARTILENCRESQNLAELPLSAHL
LAPVQRICRYPLHLNEIIKSALEKGAKEGNDTDGAKSAGKTTDYEQLDVT
ELDIPDSQDTVNLALEAMRGITEAVNEGKRHSETIARHQASFQNFKGPPL
HLHSARFFLQVDATRQKQNLWNSSYTLFLFDNQLVYCKRDIIKRSHFIYK
GRIFLDRCRVVNVRDGKMFGHTIKNSLRIYSESRDKWYDFSFRSANRKHR
FLSTLALERQFGGKALYVSEMTGFEYNYEERPGDYSDQSDYDAQDFELAT
GVTSGESSLPESPAKSTSRLCETLPKKSQSRDGISSAENSQIVTTTSTGS
LGRRHFGNWFRKPKSANCTPSQSPTHKPSFDADATLTEARVAAMELAEAA
AALVPTDSSSA*
BS30122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-PF | 1011 | CG43976-PF | 1..1011 | 1..1011 | 5200 | 100 | Plus |
| RhoGEF3-PA | 1011 | CG43976-PA | 1..1011 | 1..1011 | 5200 | 100 | Plus |
| RhoGEF3-PH | 1026 | CG43976-PH | 90..1026 | 75..1011 | 4802 | 99.6 | Plus |
| RhoGEF3-PM | 3518 | CG43976-PM | 2586..3518 | 79..1011 | 4794 | 99.8 | Plus |
| RhoGEF3-PL | 3519 | CG43976-PL | 2587..3519 | 79..1011 | 4794 | 99.8 | Plus |
