BS30125.complete Sequence
3143 bp assembled on 2012-09-25
GenBank Submission: KX802806
> BS30125.complete
GAAGTTATCAGTCGACATGCAGTACTTAAACTTTCCGCGCATGCCAAACA
TTATGATGTTCCTGGAGGTTGCGATCTTATGCCTGTGGGTGGTCGCAGAC
GCATCGGCCAGTTCGGCCAAGTTCGGCAGCACAACGCCCGCAAGTGCGCA
GCAGTCGGATGTGGAACTGGAGCCCATCAATGGGACTCTCAATTACCGAC
TGTACGCCAAGAAGGGCAGGGACGACAAACCCTGGTTTGATGGCCTAGAC
AGCAGGCACATCCAGTGTGTCCGACGTGCCCGTTGCTACCCCACCTCGAA
CGCAACCAACACCTGTTTCGGCTCAAAATTGCCCTATGAGCTGAGCAGCC
TAGATCTCACCGACTTCCACACCGAAAAGGAGCTGAACGATAAGCTGAAC
GACTACTATGCCCTGAAGCACGTGCCCAAATGTTGGGCAGCTATACAGCC
CTTTTTGTGCGCCGTCTTTAAGCCGAAGTGTGAAAAAATCAACGGCGAGG
ACATGGTCTACCTGCCATCTTACGAGATGTGCCGAATTACCATGGAACCC
TGTCGCATTTTGTACAACACGACGTTTTTCCCAAAATTCCTTCGCTGCAA
CGAAACACTCTTTCCGACGAAATGCACAAACGGAGCACGAGGAATGAAAT
TCAACGGAACTGGCCAGTGTTTAAGTCCTTTGGTTCCGACAGATACGTCA
GCCAGCTATTATCCTGGCATCGAGGGCTGCGGCGTGCGATGCAAGGATCC
ACTCTATACCGATGATGAGCATCGGCAGATCCACAAACTGATCGGATGGG
CTGGCAGCATATGTCTTCTGTCTAACCTTTTCGTGGTGTCCACCTTCTTC
ATCGACTGGAAGAATGCCAACAAGTATCCGGCAGTAATTGTGTTCTACAT
AAATCTTTGCTTTCTAATTGCTTGCGTCGGCTGGTTGCTTCAGTTTACTT
CTGGCTCGCGAGAGGACATAGTATGTCGTAAGGATGGAACACTTCGCCAC
TCAGAGCCTACAGCCGGTGAAAATCTTTCTTGCATAGTGATCTTTGTGCT
GGTCTATTATTTTCTCACCGCTGGAATGGTTTGGTTTGTGTTCCTCACCT
ACGCCTGGCATTGGAGGGCCATGGGCCACGTCCAAGATCGGATAGATAAG
AAAGGTTCCTACTTTCACCTCGTGGCGTGGTCACTACCCCTTGTGCTTAC
CATTACCACGATGGCTTTCAGTGAGGTGGATGGAAATAGTATTGTGGGCA
TCTGCTTCGTAGGCTATATCAATCATTCTATGAGGGCAGGACTACTTCTT
GGTCCGCTCTGCGGGGTCATCCTCATTGGTGGATACTTCATCACCCGCGG
CATGGTGATGCTTTTTGGACTGAAACACTTCGCTAATGACATTAAATCAA
CTTCGGCGAGCAACAAAATCCATTTGATCATCATGCGCATGGGAGTCTGT
GCTCTGCTCACTTTAGTTTTCATACTAGTGGCCATTGCGTGCCACGTTAC
GGAGTTTAGGCATGCAGACGAATGGGCCCAGAGCTTCAGACAGTTTATAA
TCTGCAAAATTTCTTCAGTTTTTGAAGAAAAGAGTTCCTGTCGAATTGAA
AACCGACCTAGTGTTGGCGTTCTTCAATTGCATTTGCTGTGTCTATTTAG
CTCTGGAATCGTAATGTCCACCTGGTGCTGGACACCTTCTTCAATTGAGA
CTTGGAAGCGTTATATAAGGAAAAAGTGTGGCAAAGAGGTGGTCGAAGAA
GTGAAAATGCCGAAGCACAAGGTCATTGCCCAGACATGGGCCAAGCGCAA
GGATTTCGAGGACAAGGGCAGGCTCTCCATAACGCTCTACAACACCCACA
CAGATCCCGTGGGGCTCAACTTCGATGTGAACGATCTGAACTCTTCTGAG
ACGAATGACATCTCATCAACTTGGGCTGCATACCTCCCGCAGTGCGTAAA
ACGTCGCATGGCTTTGACGGGAGCAGCGACAGGTAACTCGTCAAGCCATG
GACCGCGAAAAAATTCATTGGATTCCGAGATAAGTGTGAGTGTTCGACAT
GTTTCCGTTGAATCCCGCAGAAATTCGGTGGACTCGCAGGTATCAGTGAA
AATAGCTGAAATGAAGACCAAAGTGGCGTCCAGATCAAGGGGAAAACACG
GAGGCTCTTCCAGCAACAGAAGAACCCAAAGGAGAAGGGATTATATAGCA
GCTGCCACTGGAAAAAGCAGTAGGAGAAGGGAAAGCAGTACTTCAGTGGA
GTCGCAGGTCATCGCGCTCAAGAAAACGACCTATCCCAATGCTAGTCACA
AAGTGGGCGTGTTTGCTCATCACAGCTCCAAGAAACAACACAATTACACC
AGCTCCATGAAGCGAAGGACTGCTAATGCCGGATTGGATCCCTCTATTCT
TAATGAATTCCTGCAGAAAAATGGCGATTTTATATTCCCATTCCTCCAAA
ATCAAGATATGAGCTCTAGTTCGGAGGAGGATAATTCCAGAGCATCCCAA
AAGATTCAGGATCTTAACGTGGTTGTAAAGCAGCAGGAAATAAGTGAGGA
TGATCACGACGGAATAAAGATTGAAGAACTGCCAAATAGCAAACAGGTGG
CATTGGAGAACTTTCTTAAAAACATAAAAAAATCTAATGAATCCAATTCT
AACCGACATTCCCGAAATTCCGCAAGAAGTCAGTCAAAAAAGTCCCAAAA
GAGACATCTCAAGAACCCTGCTGCTGATCTAGATTTCAGGAAGGACTGTG
TAAAGTATCGGTCTAATGACTCACTTAGCTGCTCCTCTGAAGAGCTGGAT
GTGGCTTTGGACGTAGGAAGCCTTCTTAACAGCTCTTTTTCTGGAATATC
CATGGGCAAACCACATAGTAGAAACAGCAAAACCAGCTGCGATGTGGGCA
TACAGGCTAATCCTTTCGAGCTAGTTCCCAGTTACGGAGAAGACGAACTG
CAGCAGGCCATGCGACTCCTAAACGCAGCCAGCAGACAAAGAACTGAAGC
AGCCAATGAGGATTTCGGAGGAACGGAGCTGCAGGGCTTGTTGGGTCATT
CCCATCGGCATCAAAGGGAGCCCACGTTTATGAGCGAGTCGGACAAACTC
AAAATGTTATTGCTGCCTTCAAAATAGAAGCTTTCTAGACCAT
BS30125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smo-RA | 3111 | CG11561-PA | 1..3111 | 17..3127 | 15555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smo-RA | 4008 | CG11561-RA | 245..3355 | 17..3127 | 15555 | 100 | Plus |
| CG17078-RE | 3132 | CG17078-RE | 1..305 | 359..55 | 1525 | 100 | Minus |
| CG17078-RE | 3132 | CG17078-RE | 371..409 | 55..17 | 195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 280110..281514 | 1723..3127 | 7025 | 100 | Plus |
| 2L | 23513712 | 2L | 279184..279805 | 930..1551 | 3110 | 100 | Plus |
| 2L | 23513712 | 2L | 278641..279124 | 447..930 | 2420 | 100 | Plus |
| 2L | 23513712 | 2L | 277930..278323 | 55..448 | 1970 | 100 | Plus |
| 2L | 23513712 | 2L | 279870..280040 | 1552..1722 | 855 | 100 | Plus |
| 2L | 23513712 | 2L | 277826..277864 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:08:40 has no hits.
BS30125.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-25 10:32:25 Download gff for
BS30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 239..3342 | 17..3120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:37 Download gff for
BS30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 245..3348 | 17..3120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:06 Download gff for
BS30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smo-RA | 245..3348 | 17..3120 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:06 Download gff for
BS30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 279870..280040 | 1552..1722 | 100 | -> | Plus |
| 2L | 277826..277863 | 17..54 | 100 | -> | Plus |
| 2L | 277930..278323 | 55..448 | 100 | -> | Plus |
| 2L | 278643..279124 | 449..930 | 100 | -> | Plus |
| 2L | 279185..279805 | 931..1551 | 100 | -> | Plus |
| 2L | 280110..281507 | 1723..3120 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:37 Download gff for
BS30125.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 277826..277863 | 17..54 | 100 | -> | Plus |
| arm_2L | 277930..278323 | 55..448 | 100 | -> | Plus |
| arm_2L | 278643..279124 | 449..930 | 100 | -> | Plus |
| arm_2L | 279185..279805 | 931..1551 | 100 | -> | Plus |
| arm_2L | 279870..280040 | 1552..1722 | 100 | -> | Plus |
| arm_2L | 280110..281507 | 1723..3120 | 100 | | Plus |
BS30125.pep Sequence
Translation from 16 to 3126
> BS30125.pep
MQYLNFPRMPNIMMFLEVAILCLWVVADASASSAKFGSTTPASAQQSDVE
LEPINGTLNYRLYAKKGRDDKPWFDGLDSRHIQCVRRARCYPTSNATNTC
FGSKLPYELSSLDLTDFHTEKELNDKLNDYYALKHVPKCWAAIQPFLCAV
FKPKCEKINGEDMVYLPSYEMCRITMEPCRILYNTTFFPKFLRCNETLFP
TKCTNGARGMKFNGTGQCLSPLVPTDTSASYYPGIEGCGVRCKDPLYTDD
EHRQIHKLIGWAGSICLLSNLFVVSTFFIDWKNANKYPAVIVFYINLCFL
IACVGWLLQFTSGSREDIVCRKDGTLRHSEPTAGENLSCIVIFVLVYYFL
TAGMVWFVFLTYAWHWRAMGHVQDRIDKKGSYFHLVAWSLPLVLTITTMA
FSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILIGGYFITRGMVMLF
GLKHFANDIKSTSASNKIHLIIMRMGVCALLTLVFILVAIACHVTEFRHA
DEWAQSFRQFIICKISSVFEEKSSCRIENRPSVGVLQLHLLCLFSSGIVM
STWCWTPSSIETWKRYIRKKCGKEVVEEVKMPKHKVIAQTWAKRKDFEDK
GRLSITLYNTHTDPVGLNFDVNDLNSSETNDISSTWAAYLPQCVKRRMAL
TGAATGNSSSHGPRKNSLDSEISVSVRHVSVESRRNSVDSQVSVKIAEMK
TKVASRSRGKHGGSSSNRRTQRRRDYIAAATGKSSRRRESSTSVESQVIA
LKKTTYPNASHKVGVFAHHSSKKQHNYTSSMKRRTANAGLDPSILNEFLQ
KNGDFIFPFLQNQDMSSSSEEDNSRASQKIQDLNVVVKQQEISEDDHDGI
KIEELPNSKQVALENFLKNIKKSNESNSNRHSRNSARSQSKKSQKRHLKN
PAADLDFRKDCVKYRSNDSLSCSSEELDVALDVGSLLNSSFSGISMGKPH
SRNSKTSCDVGIQANPFELVPSYGEDELQQAMRLLNAASRQRTEAANEDF
GGTELQGLLGHSHRHQREPTFMSESDKLKMLLLPSK*
BS30125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:46:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smo-PA | 1036 | CG11561-PA | 1..1036 | 1..1036 | 5456 | 100 | Plus |
| fz2-PG | 694 | CG9739-PG | 296..622 | 234..572 | 426 | 28.6 | Plus |
| fz2-PE | 694 | CG9739-PE | 296..622 | 234..572 | 426 | 28.6 | Plus |
| fz2-PD | 694 | CG9739-PD | 296..622 | 234..572 | 426 | 28.6 | Plus |
| fz2-PC | 694 | CG9739-PC | 296..622 | 234..572 | 426 | 28.6 | Plus |
