BS30131.complete Sequence
3236 bp assembled on 2012-09-26
GenBank Submission: KX803399
> BS30131.complete
GAAGTTATCAGTCGACATGACGCTGAACGAGAGCGACGCTACTCGCCTGG
AGCTGACGCGCAACTTCCTGGAACTGTCTCGAAATCCGGAAACATGCACC
GCCCTGCGCAGCTCGGACTGTATCCAGCTTCTGGTGCAGATTCTGCACGC
CAACGACGAAGGCCTCTCCACGGCGAAAAAGTACGCCAGCCAGGCGCTGC
ACAACATCGTCCACAATAATCCGGAGGAGAAGGAGCGCCAGCGGGAGGTG
AAGATGCTGCGCCTGCTGGACCAGATCCTCGACTACTGTAACTTTCTGCA
CACCCAGTTGCAGAGCGGCGGTGAGGCTATCGCAGATGATGAAGATCGTC
ATCCGCTGGCGGCTATGAAGCTCCTGATGAAAGCCAGTTTCGACGAGGAG
CACCGCCAGACTATGTGCGAACTGGGAGCCCTCAAGGCGATTCCCAATTT
GGTCCACCTTGATCATGCGGTCCATGGACCGGCTGCCGGTAGGGAACAGT
GCAACGCCCTCAGGAGCTACGGCCTCATGGCCCTCACGAATCTCACCTTC
GGAGACGAGAACGTCCATAACAAATCGTATCTGTGCGGTCAGCGACAGTT
CATGGAAGTGGTCATTGCTCAATTGAACACGGCTCCGGATGAACTGCTAC
AGGTTCTTGCTGGTGTGCTTCGCAATCTTTCGTGGCGCGCGGACAAACAC
ATGAAGACTATCTTTAACGAGCTGGGTACTGTGACCTCCTTGGCTCGAGC
AGCCATGCAAAACAAGAACGAGAACACTCTCAAGGCCATACTTTCAGCCC
TTTGGAATCTCTCAGCGCACTGCAGCACCAACAAGGCGGAGTTTTGTGCA
GTAGACGGAGCACTGGCATTTTTGGTCGGAATGCTTAGCTACGAGGGTCC
GAGTAAAACTCTTAAGATCATCGAAAATGCAGGCGGCATTCTTCGAAATG
TATCGAGCCATATTGCGGTGTGTGAGCCGTACCGACAAATCCTAAGACGG
TACAATTGCCTTGCCATTCTGTTGCAACAGTTGAAATCGGAGAGCCTAAC
CGTGGTAAGCAACTCCTGCGGAACTCTGTGGAATCTCTCGGCGCGCTGTC
CCGAGGACCAGCAATACCTCATTGACCACAATGCCATCCCGCTCTTGCGG
GCCCTAATCAGCTCCAAGAACTCCATGATTGCGGAGGGCAGTGCCTCGGC
TTTGAAAAACCTAGTTAATTTCAGGGCCACTCAGGAGCTTATGCCCAATG
GAGATGGTGGGTCACTGCCACTAGACAAGGAAGCTGGCCATGGAGGTACG
CTGCCACGGAGATTCAGCTCACTGCGCCTAAGCTCAAATCCCACGGGATC
GCTTAAGAAAGTGCGACCCTCAACAGTCAGCACAACTGGCTTTCTGAACA
GAAAATGTGAGAGCCGAGAGTCCATTTACTCGGGCAAATCCGATTCCACT
AAATACTCAACCAAGTCGGAGGGAGCGAAGAATCCCTTCGAAATTGTGAC
ACCCACTGAAGAGCAGCCCATTGACTACTCCATGAAGTACATGGAGCACA
AACCCAATAGCAGTAAGACCTTTGAGATCGACTTGGATCAGCCAACGGAT
TTCAGTGCTAGATATAAGGAGAGACGATCCGCTCAGACGGCACAGCCGGA
GCTGAAGTCGGAGACCAATGAGATTAGAAGTAAGGAGTTGCAACTGACAA
AGTCCTCCTCGGCCACGGAGCTGCGCAATAGTCCTGGCCTGGTGGCGGTT
TCAGCAGCTAAGCAGAAAATTGCCACCGAAACGGAGACGGAAACGGCAGA
GCGACCAATAAACTACTGTGAAGAAGGGACTCCCGGCAGCTTCAGTCGCT
TCGACTCGCTCAACAGCCTCACAGAGAAACCGGAGAAATGTATGCCGCCA
AAAACTCCAACGAAAACTGCGGTTCTCCCGGTGCACGTTGACGGAAATAC
GCCTCAAAACATCGATTCCGCACTAGAAACTCCATTAATGTTTTCGCGTC
GCAGCTCTATGGACTCATTGGTTGGCGACGACGAAACGGTTGCCTGCGAG
GACAATGGATCCGTGATCAGTGAATACAGCCGGATGCAGAGTGGTGTTAT
TTCCCCCTCAGAGCTGCCCGATTCACCCACCCAGAGTATGCCTCAATCTC
CGAGAAGGGACAGAAAAGTGTCCACTCAAAATAACTTGGACACACCTGAA
CAGAAGCCCAGTACTGTGTTTGAGGACAAGTTGAACAGATTCCACGTGGA
GCACACGCCTGCTGCCTTCTCCTGCGCCACCAGTCTAAGTAATCTGAGCA
TGATGGACGACTCTAATGCAAACGCTATTCGAGGACAGCGTGGAAATGAC
ATCAACGGCAATGGGGATGCTCCTCGCAGCTATTGCACAGAGGACACTAC
TGCCGTGCTTTCCAAAGCGCCAAGCAATAGTGATCTGTCCATTTTGTCCA
TCCCGAATGATCTAAATGCGAATGAAGCGCAGCCAGTGCCTGCTCCGCGA
GCTGATGTTACCGGAATGGACACTCGGATGCCGGCAGAAGATGCAATCTC
TAAGATGCGCTGCGGTGGCAATGCATTGCCCAGTTATCTGCCAGTGTCGG
ATGAAATGAGCAAGTACTATGTCGAGGACAGTCCCTGCACGTTTTCGGTC
ATCTCGGGACTATCCCATCTCACTGTTGGCTCTGCTAAGGCTGGGCCTGT
TCTGAAGCTGCCAATGAGGACTGCAGAAGAGGCTCAGGCACCCAAACTTC
CTCCCAGACGTAGTGCCGTTCAAGGAGATGCGGAGCCACGCTTACCGCCG
AAGAAAAGCGACTCACTGAGCTCATTGTCCATGGACTCGGATGACGACTG
TAATCTTCTAAGTCAGGCCATTGCTGCGGGAAGTTGTCGACCTCAGCCCA
GCGGTGCCAGTACCAGCTCCAGCCTGGCGAACGCTAGTACCAGCACTCTA
TGCAGGGAAAATGGGCAGTCAAAGAAGCAGGTGGAGCATGGCGATAAGCC
GAACTACAGCTCAGATGACTCGCTAGACGACGACGACGATGATGCACGGT
CCAAGTCGCTATTTGAGCAGTGCATTCTGAGCGGCATGCATAAGTCCAAC
GACGCCTTGGAGTCGGAGGGTGAGCCGCCGGGGCAGCGCCAGGAGATCAG
TGCCCGGGATCGATTTGTCAGTAACCAGGTGCGCCAGATTGAGTCCATGT
TGGCTGGGCGTCAGCACTAGAAGCTTTCTAGACCAT
BS30131.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:17:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apc2-RA | 3204 | CG6193-PA | 1..3204 | 17..3220 | 16020 | 100 | Plus |
| Apc-RB | 7254 | CG1451-PB | 856..1770 | 191..1111 | 895 | 73.4 | Plus |
| Apc-RA | 7254 | CG1451-PA | 856..1770 | 191..1111 | 895 | 73.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apc2-RA | 3538 | CG6193-RA | 209..3416 | 17..3224 | 16040 | 100 | Plus |
| Apc-RB | 8317 | CG1451-RB | 985..1899 | 191..1111 | 895 | 73.4 | Plus |
| Apc-RA | 8441 | CG1451-RA | 1109..2023 | 191..1111 | 895 | 73.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24164870..24167087 | 650..2867 | 11090 | 100 | Plus |
| 3R | 32079331 | 3R | 24164174..24164811 | 17..654 | 3190 | 100 | Plus |
| 3R | 32079331 | 3R | 24167282..24167641 | 2865..3224 | 1800 | 100 | Plus |
| 3R | 32079331 | 3R | 28838992..28839906 | 1111..191 | 895 | 73.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:17:49 has no hits.
BS30131.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-26 17:58:18 Download gff for
BS30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 207..3410 | 17..3220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:20 Download gff for
BS30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 209..3412 | 17..3220 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:21 Download gff for
BS30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Apc2-RA | 209..3412 | 17..3220 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:21 Download gff for
BS30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24164174..24164809 | 17..652 | 100 | -> | Plus |
| 3R | 24164873..24167086 | 653..2866 | 100 | -> | Plus |
| 3R | 24167284..24167637 | 2867..3220 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:20 Download gff for
BS30131.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19989896..19990531 | 17..652 | 100 | -> | Plus |
| arm_3R | 19990595..19992808 | 653..2866 | 100 | -> | Plus |
| arm_3R | 19993006..19993359 | 2867..3220 | 100 | | Plus |
BS30131.pep Sequence
Translation from 16 to 3219
> BS30131.pep
MTLNESDATRLELTRNFLELSRNPETCTALRSSDCIQLLVQILHANDEGL
STAKKYASQALHNIVHNNPEEKERQREVKMLRLLDQILDYCNFLHTQLQS
GGEAIADDEDRHPLAAMKLLMKASFDEEHRQTMCELGALKAIPNLVHLDH
AVHGPAAGREQCNALRSYGLMALTNLTFGDENVHNKSYLCGQRQFMEVVI
AQLNTAPDELLQVLAGVLRNLSWRADKHMKTIFNELGTVTSLARAAMQNK
NENTLKAILSALWNLSAHCSTNKAEFCAVDGALAFLVGMLSYEGPSKTLK
IIENAGGILRNVSSHIAVCEPYRQILRRYNCLAILLQQLKSESLTVVSNS
CGTLWNLSARCPEDQQYLIDHNAIPLLRALISSKNSMIAEGSASALKNLV
NFRATQELMPNGDGGSLPLDKEAGHGGTLPRRFSSLRLSSNPTGSLKKVR
PSTVSTTGFLNRKCESRESIYSGKSDSTKYSTKSEGAKNPFEIVTPTEEQ
PIDYSMKYMEHKPNSSKTFEIDLDQPTDFSARYKERRSAQTAQPELKSET
NEIRSKELQLTKSSSATELRNSPGLVAVSAAKQKIATETETETAERPINY
CEEGTPGSFSRFDSLNSLTEKPEKCMPPKTPTKTAVLPVHVDGNTPQNID
SALETPLMFSRRSSMDSLVGDDETVACEDNGSVISEYSRMQSGVISPSEL
PDSPTQSMPQSPRRDRKVSTQNNLDTPEQKPSTVFEDKLNRFHVEHTPAA
FSCATSLSNLSMMDDSNANAIRGQRGNDINGNGDAPRSYCTEDTTAVLSK
APSNSDLSILSIPNDLNANEAQPVPAPRADVTGMDTRMPAEDAISKMRCG
GNALPSYLPVSDEMSKYYVEDSPCTFSVISGLSHLTVGSAKAGPVLKLPM
RTAEEAQAPKLPPRRSAVQGDAEPRLPPKKSDSLSSLSMDSDDDCNLLSQ
AIAAGSCRPQPSGASTSSSLANASTSTLCRENGQSKKQVEHGDKPNYSSD
DSLDDDDDDARSKSLFEQCILSGMHKSNDALESEGEPPGQRQEISARDRF
VSNQVRQIESMLAGRQH*
BS30131.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Apc2-PA | 1067 | CG6193-PA | 1..1067 | 1..1067 | 5480 | 100 | Plus |
| Apc-PB | 2417 | CG1451-PB | 239..1446 | 11..1061 | 2494 | 48.9 | Plus |
| Apc-PA | 2417 | CG1451-PA | 239..1446 | 11..1061 | 2494 | 48.9 | Plus |
