BS30132.complete Sequence
3455 bp assembled on 2012-10-24
GenBank Submission: KX805119
> BS30132.complete
GAAGTTATCAGTCGACATGGATACATTTTCCGCTGCGGTTTTCCCCCGGC
AGCCGGTGGCTTTCGTCCTGGTCCTGGCCACAGCTCTTTCCCTGGTCCAA
GGTGAACAGCACCCCGCCACTGCAGACGAAGGACCCCTATCCGAGATTCT
CACTGCCGTTGGTTCCGAGGTGGCGCTCCCATGCGATCTGGTGCCCGGAA
CTGGGATCGTCGACAAGGTGCAGCTGGTCATCTGGTATCGCCAGGGAAAC
GTGAAGCCCATCTATACCTTTGATGCGCGAGGTCGTCCATTGAATCTGGG
CATTCCCTGGGCAGATGAAAGTGTGTTCAACAAGAAGGCCCACTTCCACC
ACGACACAGATCCTCCTGCCCTGCGGATCAAGAACATTCAAACCTCCGAT
GCCGGACTCTACAAGTGCCGAGTGGACTTCCACAAGTCACCAACTCGCAA
CTGGCGCATCAATGTAACAGTGCTAGTTCCACCCACTGCGCTGACCATCC
TGGATCACCATGGGGCCGAGATCCGGGACCAGACGGCAGGACCGTACCTG
GAAGGCGACAGCATCGACCTCACCTGCCTCTCGAGCGGCGGAGTTCCTCC
TCCGCGGGTCTCCTGGTGGCGGGAGCACGCCCTGATCGACGACTCCTTTC
AGGTGCTGCCCGACGGCTCCGTGCGGAATGTCCTGCGCCTCAAGAACATT
CAGCGGAAGGATCTCCTCACGATGTACACCTGCCAGGCGAGCAATGGCCA
CGTGGTTCCAGCGCTGACCAAGAAGGTTATCCTCGACATGAATCTTCCCC
CACTTAGTTTGCTTTTGCAAGGCCTTAACCATGCCGTAATTGCTGGAACC
CGATCCCACGTTACTTGCACGGCCATTGGCGCTCGTCCTCCGCCGGAAAT
AATCTGGTCTAAGGCGGGACAGATTGTGCGGGGAGCCACCTCCTCGACGT
CGTCCGATGGGAACACAACCATATCGGAACTGATGCTGATTCCCGTTCCC
GAGGATAATGAACGCCAGGTGGTCTGTTCCATTTCGCTGAATGCGGGGAT
TACCTCCCAGCAGCTGCATGAGGGCCACACCACTGTGATGACTACTCTGG
GCAATGGACACACCGGACTCTATCTGAAGGATTCCAGGGTGCTCAATGTG
ACGCATGCACCCATTGTCAACCTTAACCTGGGCGCTCCTCTCGATCCGGA
TAATCTGCTCAAGGGCACCGATGTCTACTTGGAGTGCGATGTGAAGGCGA
ATCCCGCGATTACACGTGTGGAGTGGTACCACAGTGATAAGCAATTGCAT
TCCTCCCGCGGCATCATCATCTCCAACCAGACCCTCGTCCTCCAGGGCAT
TTCCAAGTCCTCGCACGGCCAGTACTTCTGTCGGGCCTCAAATCTCCAGG
GCAGTGTGTCCAGCAATGAGGTGTACTTGGATGTGAAATATCCACCCGTT
TGCAAGTCGGAATCGACGATTATACGTGCCGCGCTCAAGCAGACAATCAA
CATCACCTGCGAGGTGGACGCGAATCCAGTCGATAATCTAAATTACAAGT
GGCACTTCAACAACTCGCTGGAGAGCCTCATCGAGCTGCCCCAACTGGGC
CAGGGGGCTCCGGTGATGCTGGCCTCCGGATCGGACCAGAGCGGATATTA
TCAGCGGAGCAAGCGGAAGCACTCGCACGGAATGCAGCAACGCCTGCTCC
ACGGCAGGCATGGCCGCATGGCGGCGGTGAGGTTCGAGGATGAGGACGAG
GACGGCTACGGCGAGTTCGAGGAGTATGGCGACGAGGTGGGCCAGCCCTT
CACCCAGATGGTCTACTCGAACATGGTGCACAAGAACCACGTTGAGAGCA
GCAAGCAGCAGCAGCGGAAGCAGCTGTCCCCTCAGCAGCAGCAGCAGCAG
CAGCAGATGGCATCCGGCGGCTCGTCCGGAGACAGCCACACCCCCTCCGG
CGGAGTCATCCTGGAGCGCAAGCGACTGGTGGCCCTGCACAAGCAGCACC
ACCGAGGCGGCGTGGCCACGCCCCCGACCACCACCGCCGCGCCCCCGCTG
AACAACGTGTATAGCTACCACGTAGAGAGCTACGAGAGCTTCGGCGCCAT
TTCCTGCGTGGCCAGCAGTCCGATGGGCCACAGTGCGCCCTGTTGGTATC
ACATCCAGCCGGCAGACCTTCCCGAACCCGTGAAGAACTGCACGGCCTAC
AATGCCACGGCCAATTCGCTGCAGATTCAGTGCATTCCCGGCTACGATGG
CGGCATTCCGCAACACTTTCACGCCCAGATCTACGATGAACTGAACCGAC
AAATCCTTTACAATGCCTCGTACAAGTACTCGGAGTTCACGGTGAAGCGC
CTGCCCAGCGACTCCGTGTTTGTCATCCGGATAACGGCGGTGAATGCCCA
GGGAGCCAGCAAGGTGGCATATCGTCTGCGGGGACGCACGCTTTCGGCTC
CTCTGCTGCGGACAGCCTCATCGACGGCGGTGCTGGTGCAACTGACACCC
CTGCTGGGCGCCCTGGTCGGCGTGATTGCCACACTCATTCTGGTGGCCAT
TTGCGTGGTGATCGTTATCAAATTCCGGAGCAAGCGGGGCGGCAGGCGGC
ACGGATCGGGCGCGGATGCCACCACCACGGAGGCGGACAAGGGCAGTGCG
GAGCCGCTGTCTCGCAACATGGGCAGCCACTCCAGCCTCGAGGACAAAAA
TCCGGACGTGGTGCCCCAGGAGGCCAACAGCGAGGACGAGTTTCACCAGG
AGGAGAAGGCCTTCGACCGATTGAATATGGAATCACAGCGGATTTTATAC
ACCCCGCCGACGCGGATTAACACCGCCTCTCCGCCGCCGCCCTCGCTGTC
GCCCACCTTTGGCAAGCAGTACGGTGAACTGTCGCTAACCACGAATCCTG
CCTTCAGCCTGTACAACACGCCCCAGCGCGCTCCTGCCGTTCAGCGACCC
GTTTACACCGCCCCGCCGCCCCTTCTGTCCACAAGGACGCCCCCGAATAT
CTACACCCGCATCCCGGGTCGCGGGGGCGGTGGAGGCGGAGCAACGGTCA
CGGCGGCTGGAGCCGGCGGCTACCACTTGCCAGCGTACGAGACCCGCACT
TCGCCCACCTCTCCGTATGGATCCACCACCACGTGCACGATGCCCCTGCT
GGGCGGCCAGTCCAATGGCTCGCTGCAGAGCGGCGGAGTGGGCGGCGTGG
GTGGCCTGGTGGGCGGTGGGGCATGCAACACGCTGCCCCACCCGGGAAGC
CTGCATGTGGGCGGCATTTCGGCGGCCCTGACCAGCTCGGTGACCAGCGG
AAACATCACCATCGGAGCGGCCCAGTCGCTGCTGACGTCGCCGCGCTCAC
AGACGGCCACGTACAGCACCACTTTGGGTGGAGTGCAGTCGCCACTCCTG
ATGGGCGGCGGCGGGAACTACGAGACGGTGAGCTCCTGAAAGCTTTCTAG
ACCAT
BS30132.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34371-RB | 3525 | CG34371-PB | 1..3423 | 17..3439 | 17115 | 100 | Plus |
| CG34371-RA | 3423 | CG34371-PA | 1..3423 | 17..3439 | 17115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34371-RB | 5760 | CG34371-RB | 823..4245 | 17..3439 | 17115 | 100 | Plus |
| CG34371-RA | 5760 | CG34371-RA | 823..4245 | 17..3439 | 17115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23168050..23168775 | 2165..1440 | 3630 | 100 | Minus |
| 2R | 25286936 | 2R | 23164527..23165100 | 3439..2866 | 2870 | 100 | Minus |
| 2R | 25286936 | 2R | 23165964..23166370 | 2869..2463 | 2035 | 100 | Minus |
| 2R | 25286936 | 2R | 23166716..23167018 | 2465..2163 | 1515 | 100 | Minus |
| 2R | 25286936 | 2R | 23172487..23172733 | 721..475 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 23169442..23169650 | 1154..946 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 23172797..23173005 | 476..268 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 23168982..23169135 | 1439..1286 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 23169714..23169865 | 946..795 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 23176151..23176288 | 267..130 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 23169253..23169384 | 1286..1155 | 660 | 100 | Minus |
| 2R | 25286936 | 2R | 23191124..23191239 | 132..17 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 23170584..23170657 | 794..721 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:57:33 has no hits.
BS30132.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-24 15:53:40 Download gff for
BS30132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 821..4242 | 17..3438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:52 Download gff for
BS30132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 823..4244 | 17..3438 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:55 Download gff for
BS30132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34371-RA | 823..4244 | 17..3438 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:55 Download gff for
BS30132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23169442..23169649 | 947..1154 | 100 | <- | Minus |
| 2R | 23169714..23169865 | 795..946 | 100 | <- | Minus |
| 2R | 23170584..23170656 | 722..794 | 100 | <- | Minus |
| 2R | 23172487..23172731 | 477..721 | 100 | <- | Minus |
| 2R | 23172797..23173005 | 268..476 | 100 | <- | Minus |
| 2R | 23176151..23176286 | 132..267 | 100 | <- | Minus |
| 2R | 23191125..23191239 | 17..131 | 100 | | Minus |
| 2R | 23169254..23169384 | 1155..1285 | 100 | <- | Minus |
| 2R | 23164528..23165096 | 2870..3438 | 100 | <- | Minus |
| 2R | 23165964..23166367 | 2466..2869 | 100 | <- | Minus |
| 2R | 23166716..23167015 | 2166..2465 | 100 | <- | Minus |
| 2R | 23168050..23168775 | 1440..2165 | 100 | <- | Minus |
| 2R | 23168982..23169135 | 1286..1439 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:52 Download gff for
BS30132.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19052051..19052619 | 2870..3438 | 100 | <- | Minus |
| arm_2R | 19053487..19053890 | 2466..2869 | 100 | <- | Minus |
| arm_2R | 19054239..19054538 | 2166..2465 | 100 | <- | Minus |
| arm_2R | 19055573..19056298 | 1440..2165 | 100 | <- | Minus |
| arm_2R | 19056505..19056658 | 1286..1439 | 100 | <- | Minus |
| arm_2R | 19056777..19056907 | 1155..1285 | 100 | <- | Minus |
| arm_2R | 19056965..19057172 | 947..1154 | 100 | <- | Minus |
| arm_2R | 19057237..19057388 | 795..946 | 100 | <- | Minus |
| arm_2R | 19058107..19058179 | 722..794 | 100 | <- | Minus |
| arm_2R | 19060010..19060254 | 477..721 | 100 | <- | Minus |
| arm_2R | 19060320..19060528 | 268..476 | 100 | <- | Minus |
| arm_2R | 19063674..19063809 | 132..267 | 100 | <- | Minus |
| arm_2R | 19078648..19078762 | 17..131 | 100 | | Minus |
BS30132.pep Sequence
Translation from 16 to 3438
> BS30132.pep
MDTFSAAVFPRQPVAFVLVLATALSLVQGEQHPATADEGPLSEILTAVGS
EVALPCDLVPGTGIVDKVQLVIWYRQGNVKPIYTFDARGRPLNLGIPWAD
ESVFNKKAHFHHDTDPPALRIKNIQTSDAGLYKCRVDFHKSPTRNWRINV
TVLVPPTALTILDHHGAEIRDQTAGPYLEGDSIDLTCLSSGGVPPPRVSW
WREHALIDDSFQVLPDGSVRNVLRLKNIQRKDLLTMYTCQASNGHVVPAL
TKKVILDMNLPPLSLLLQGLNHAVIAGTRSHVTCTAIGARPPPEIIWSKA
GQIVRGATSSTSSDGNTTISELMLIPVPEDNERQVVCSISLNAGITSQQL
HEGHTTVMTTLGNGHTGLYLKDSRVLNVTHAPIVNLNLGAPLDPDNLLKG
TDVYLECDVKANPAITRVEWYHSDKQLHSSRGIIISNQTLVLQGISKSSH
GQYFCRASNLQGSVSSNEVYLDVKYPPVCKSESTIIRAALKQTINITCEV
DANPVDNLNYKWHFNNSLESLIELPQLGQGAPVMLASGSDQSGYYQRSKR
KHSHGMQQRLLHGRHGRMAAVRFEDEDEDGYGEFEEYGDEVGQPFTQMVY
SNMVHKNHVESSKQQQRKQLSPQQQQQQQQMASGGSSGDSHTPSGGVILE
RKRLVALHKQHHRGGVATPPTTTAAPPLNNVYSYHVESYESFGAISCVAS
SPMGHSAPCWYHIQPADLPEPVKNCTAYNATANSLQIQCIPGYDGGIPQH
FHAQIYDELNRQILYNASYKYSEFTVKRLPSDSVFVIRITAVNAQGASKV
AYRLRGRTLSAPLLRTASSTAVLVQLTPLLGALVGVIATLILVAICVVIV
IKFRSKRGGRRHGSGADATTTEADKGSAEPLSRNMGSHSSLEDKNPDVVP
QEANSEDEFHQEEKAFDRLNMESQRILYTPPTRINTASPPPPSLSPTFGK
QYGELSLTTNPAFSLYNTPQRAPAVQRPVYTAPPPLLSTRTPPNIYTRIP
GRGGGGGGATVTAAGAGGYHLPAYETRTSPTSPYGSTTTCTMPLLGGQSN
GSLQSGGVGGVGGLVGGGACNTLPHPGSLHVGGISAALTSSVTSGNITIG
AAQSLLTSPRSQTATYSTTLGGVQSPLLMGGGGNYETVSS*
BS30132.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34371-PB | 1174 | CG34371-PB | 1..1140 | 1..1140 | 5968 | 100 | Plus |
| CG34371-PA | 1140 | CG34371-PA | 1..1140 | 1..1140 | 5968 | 100 | Plus |
| CG12484-PA | 736 | CG12484-PA | 64..522 | 48..525 | 807 | 36 | Plus |
| CG14372-PC | 1001 | CG14372-PC | 77..540 | 40..525 | 786 | 35.8 | Plus |
| CG14372-PD | 1001 | CG14372-PD | 77..540 | 40..525 | 786 | 35.8 | Plus |
| CG12484-PA | 736 | CG12484-PA | 156..728 | 248..876 | 221 | 23.5 | Plus |
| CG14372-PC | 1001 | CG14372-PC | 563..726 | 692..854 | 191 | 27.7 | Plus |
