BS30133.complete Sequence
3482 bp assembled on 2013-04-18
GenBank Submission: KX804003
> BS30133.complete
GAAGTTATCAGTCGACATGAAGTTTCCGGATTATGTTCCAAACAACATGT
TGGTGGGTGATCGAACCACATGGGAGTACCACACGGTGGCGGTGACTCGG
GTGCCTGGCTATGGATTCGGCATCGCCGTTTCCGGTGGACGTGATAATCC
GCACTTCGCCAACGGCGATCCCTCGATAGCAGTTAGCGATGTGCTGAAAG
GTGGCCCCGCCGAGGATCGATTGCAAGTCAACGATCGGATAATCTCGGTG
AACGGCGTCTCTCTGGAGAACGTGGAATATGCTACCGCGGTGCAGGTGTT
ACGCGATAGTGGCAACACGGTGCAATTGGTGGTCAAGCGTCGCGTGCCCC
TCAATCCCATTAATGCTGCAGGTGCAGTGCAGCATCAGCATTCACACAGT
CTCAGTTCGGTTGGTCTAATGGCCAATGGAAGTGGAGGAGTGGCGCCAAC
CCCCATTACGAGTCTGAGTCAACCCAACTCGCTGAACTCTTCCCTAGTGC
AGAATGCCAGCAGTGGTCAGCCCATCAAGGTGACCCTCACCAAAGGCGGA
AAGAAAGATGACTATGGTGTGGTGCTCGGCTGCCGGCTGTTTGTTAAGGA
GATCTCCTCTAAAGCTCGCGAGCAACTAAATGCCAATGGTTATAGCTTGC
AAGAGGGTGACATCATCACCCGCATCCACAATACTAACTGCGGGGATACG
ATGAGTCTTAAGGAGGCGAAAAAGATCATTGATGGCTGCAAGGAGCGATT
GAACCTAGTGGTTCTAAGGGACATTACCAACCAAACAGCTGTTAGCCAAT
TGAATCTGAACAATTCAGCCAGCCACCAGGCGTCGGGAAATATATACGCC
ACGCATCAGCCTCAGGTATCCGGATGTAGCAGCAGTAACAACAATCTTGA
AGATCCATATCTGCCGGGCGGAGCCAGTTACTCCTCGCAGAATCTGTACG
TGCAACCGCCAACTCGCACCTCCAATGGTCCCAATATCAATGGCAATGGC
CTGAACGACGAAAAGAGTAATCTTACGCCGCGAGGTCGCTCCCGGGGCCC
CATAATGGATGGGGTATCCCTGCAGCAACTGGATAGACCCGTAACACCGA
CTCGGGGCAGGAGTGCAGCCATCGACGAGCCGCCGCGTCCACCACCACCA
AGGGGATCGAGCGGAGGAGCAGCTCAAGAGGATTTCTACAGCTCTCGCAG
GCAATTGTACGAGGAGCGTCAGAGTGCCGAACCGAGATTCATTTCCTTCC
AGAAGGAAGGAAGCGTAGGCATCCGGCTAACCGGCGGCAATGAAGCTGGT
ATTTTTGTGACTGCCGTACAACCAGGATCTCCAGCCTCGCTGCAGGGTCT
AATGCCTGGCGATAAGATCCTCAAGGTCAACGACATGGACATGAACGGAG
TGACGCGCGAGGAGGCTGTTCTCTTCCTGTTGAGTCTCCAGGATCGCATC
GATCTGATTGTGCAGTACTGCAAGGAGGAATACGACGAGGTGGTGACCAA
CCAACGTGGCGACTCCTTCCACATCAAGACACATTTCCACTGCGATAATC
CTTCCAAAGGCGAGATGGCCTTCAAGGCGGGCGATGTTTTCCGGGTGATC
GATACCCTGCACAATGGTGTGGTCGGATCCTGGCAGGTGCTGAAGATCGG
TCGGGGTCACCAGGAGATGCAGCGCGGCGTAATACCGAACAAGTCGCGGG
CTGAAGAGCTGGCCACTGCTCAGTTCAATGCCACCAAGAAGGAGATGAAT
GCAAATGAATCGAGAGGCAACTTCTTCCGGCGACGACGTTCGACGCACCG
ACGCTCGAAGAGTCTGTCCCGCGAGAACTGGGACGATGTGGTCTTCTCCG
ATAGCATTTCCAAATTCCCCGCCTACGAGCGTGTCGTTCTGCGCCATCCA
GGCTTTGTCCGACCCGTAGTGCTCTTCGGACCCGTATCCGATTTGGCCCG
CGAGCGATTGGCCAAAGATTTCCCCGATAAGTTTTCGACTCCACTGCAGG
ATGACGACAAGTCAGCCGCAACTAGTGGAAAGTGCCGCATCGTAAGGCTC
TCGAATATACGCGATGTGATGGATCGTGGAAAGCACGCCCTGCTGGACAT
TACGCCCAATGCAGTGGATCGTCTCAATTACGCGCAGTTCTATCCGGTGG
TGATCTTCCTGAAGACAGACAGCAAGCACGTGATCAAGCAGCTGCGTCAC
GGACTTCCCAAGGCGGCACACAAGAGCTCCAAGAAGCTGCTGGAGCAGTG
CCAGAAACTGGAGCGCGTCTGGTCACACATCTTTAGCACCCAGATCGCGT
TGAGCGACGAGGAGTCCTGGTACCGAAAGTTGCGCGATTCGATCGATCTG
CAGCAGAGCGGCGCCGTGTGGATGTCCGAGTCTAAGCCAGTAGAATCCCT
CTCCGACGATTTCCTATTCCCCATGACCACATCCCGACTCTCGTATGCAT
CAAGTCCCGAATCCGATTTGGAACTGAGTCCCGGCCCATCCGCATCATTG
TCGCTTGGCAATTTGCCGCAGTTGGTTAAAGCGAGCTCAGATCCATCGAT
TGCCACTAATCAGGATAACTTGGATAGGGATAGAGACATAATTGGTGAAG
GACTACCACCTCCATATACGGTACCCTACGACCATGCTGTCCCCGCGAAT
CCCAATCGCCGCCAGACCATGGACTCCAGCAAGTACAGCATCTACGGCAC
CAATGTGCCACCACAGCAGCAGCAGCCCGGCGTTGGAGGAGATACGGCTG
CAGTGAGACCGCAATCTCTGTACGGGATTAATGCTCCCGATCTGCCGCCC
CGCATCGATCGTCAGTCCAAGCCGGGCGATATACCACTGAACACCTCGGG
CTCATCGTCGCGAAATGGCACCCTGGGTCGAAGTGCCCAGGAGCGTCTGT
TTGGCAAGGCTGTGGTGCAGGACGATGTCCAGGCGGAGTACATAACCCGA
AACGCTCTGGTCGGGTCTGGAGCTGCAGAAACCCTGGATCGCCAGCAGCA
GCAGCAGCAGCAGACTCATGCATCCTTGGAGCGCCAAGCGCGTTTGAATG
CGCAGCTAAAGGCCAACGGAGTAGGCGCCGGAGGAGGTGGTGCATCCACC
TACGACAGTGTGTCCAGCTACGACTCGTACAACAATACACAAATGGCCAT
GCAAAACCTGGGCCGACTAGGTCCCAATGCACCCGACGATCTCAAATCAG
TGCCAAATGCAAATGGTCGCCCCTTGCCTCCGACGGGTCAGTCGCACGAG
TACGGTCGCACTCCGCACGATCATCGCAGCTTCGGAGGACCCAACGATCT
GAACCGGCAGAGCAGTCCGGGCAGGCCGCACTACCATGACATGAATGCGT
CCCGTAATATCGATCCACGCAATGGCACACCACAGCGTCCTTCGAATCTG
GGCCTGGAAAGCAGCCCACGCAAGCCTTTGGTGGAGACAAAAACGGATTA
CGGCAAATACAGCTGAAAGCTTTCTAGACCAT
BS30133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd-RF | 3450 | CG43140-PF | 1..3450 | 17..3466 | 17235 | 100 | Plus |
| pyd-RB | 4116 | CG43140-PB | 1..3446 | 17..3462 | 17215 | 100 | Plus |
| pyd-RI | 4161 | CG43140-PI | 84..3491 | 55..3462 | 17025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd-RF | 4196 | CG43140-RF | 326..3775 | 17..3466 | 17235 | 100 | Plus |
| pyd-RB | 5688 | CG43140-RB | 326..3771 | 17..3462 | 17215 | 100 | Plus |
| pyd-RI | 5505 | CG43140-RI | 611..4018 | 55..3462 | 17025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8839052..8840614 | 1788..226 | 7815 | 100 | Minus |
| 3R | 32079331 | 3R | 8838392..8838990 | 2386..1788 | 2995 | 100 | Minus |
| 3R | 32079331 | 3R | 8834357..8834950 | 3213..2620 | 2970 | 100 | Minus |
| 3R | 32079331 | 3R | 8835274..8835512 | 2623..2385 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 8842670..8842840 | 225..55 | 840 | 99.4 | Minus |
| 3R | 32079331 | 3R | 8834139..8834287 | 3362..3214 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 8833975..8834075 | 3462..3362 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 8844915..8844954 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:14:11 has no hits.
BS30133.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:42:00 Download gff for
BS30133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RF | 299..3747 | 17..3465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:29 Download gff for
BS30133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RF | 326..3774 | 17..3465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:00 Download gff for
BS30133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pyd-RF | 326..3774 | 17..3465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:00 Download gff for
BS30133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8834139..8834287 | 3214..3362 | 100 | <- | Minus |
| 3R | 8833972..8834074 | 3363..3465 | 98 | <- | Minus |
| 3R | 8834357..8834949 | 2621..3213 | 100 | <- | Minus |
| 3R | 8835277..8835510 | 2387..2620 | 100 | <- | Minus |
| 3R | 8838392..8838989 | 1789..2386 | 100 | <- | Minus |
| 3R | 8839052..8840614 | 226..1788 | 100 | <- | Minus |
| 3R | 8842670..8842839 | 56..225 | 99 | <- | Minus |
| 3R | 8844916..8844954 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:29 Download gff for
BS30133.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4659694..4659796 | 3363..3465 | 98 | <- | Minus |
| arm_3R | 4659861..4660009 | 3214..3362 | 100 | <- | Minus |
| arm_3R | 4660079..4660671 | 2621..3213 | 100 | <- | Minus |
| arm_3R | 4660999..4661232 | 2387..2620 | 100 | <- | Minus |
| arm_3R | 4664114..4664711 | 1789..2386 | 100 | <- | Minus |
| arm_3R | 4664774..4666336 | 226..1788 | 100 | <- | Minus |
| arm_3R | 4668392..4668561 | 56..225 | 99 | <- | Minus |
| arm_3R | 4670638..4670676 | 17..55 | 100 | | Minus |
BS30133.pep Sequence
Translation from 16 to 3465
> BS30133.pep
MKFPDYVPNNMLVGDRTTWEYHTVAVTRVPGYGFGIAVSGGRDNPHFANG
DPSIAVSDVLKGGPAEDRLQVNDRIISVNGVSLENVEYATAVQVLRDSGN
TVQLVVKRRVPLNPINAAGAVQHQHSHSLSSVGLMANGSGGVAPTPITSL
SQPNSLNSSLVQNASSGQPIKVTLTKGGKKDDYGVVLGCRLFVKEISSKA
REQLNANGYSLQEGDIITRIHNTNCGDTMSLKEAKKIIDGCKERLNLVVL
RDITNQTAVSQLNLNNSASHQASGNIYATHQPQVSGCSSSNNNLEDPYLP
GGASYSSQNLYVQPPTRTSNGPNINGNGLNDEKSNLTPRGRSRGPIMDGV
SLQQLDRPVTPTRGRSAAIDEPPRPPPPRGSSGGAAQEDFYSSRRQLYEE
RQSAEPRFISFQKEGSVGIRLTGGNEAGIFVTAVQPGSPASLQGLMPGDK
ILKVNDMDMNGVTREEAVLFLLSLQDRIDLIVQYCKEEYDEVVTNQRGDS
FHIKTHFHCDNPSKGEMAFKAGDVFRVIDTLHNGVVGSWQVLKIGRGHQE
MQRGVIPNKSRAEELATAQFNATKKEMNANESRGNFFRRRRSTHRRSKSL
SRENWDDVVFSDSISKFPAYERVVLRHPGFVRPVVLFGPVSDLARERLAK
DFPDKFSTPLQDDDKSAATSGKCRIVRLSNIRDVMDRGKHALLDITPNAV
DRLNYAQFYPVVIFLKTDSKHVIKQLRHGLPKAAHKSSKKLLEQCQKLER
VWSHIFSTQIALSDEESWYRKLRDSIDLQQSGAVWMSESKPVESLSDDFL
FPMTTSRLSYASSPESDLELSPGPSASLSLGNLPQLVKASSDPSIATNQD
NLDRDRDIIGEGLPPPYTVPYDHAVPANPNRRQTMDSSKYSIYGTNVPPQ
QQQPGVGGDTAAVRPQSLYGINAPDLPPRIDRQSKPGDIPLNTSGSSSRN
GTLGRSAQERLFGKAVVQDDVQAEYITRNALVGSGAAETLDRQQQQQQQT
HASLERQARLNAQLKANGVGAGGGGASTYDSVSSYDSYNNTQMAMQNLGR
LGPNAPDDLKSVPNANGRPLPPTGQSHEYGRTPHDHRSFGGPNDLNRQSS
PGRPHYHDMNASRNIDPRNGTPQRPSNLGLESSPRKPLVETKTDYGKYS*
BS30133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pyd-PB | 1371 | CG31349-PB | 1..1149 | 1..1149 | 5982 | 100 | Plus |
| pyd-PF | 1149 | CG31349-PF | 1..1149 | 1..1149 | 5982 | 100 | Plus |
| pyd-PJ | 1735 | CG31349-PJ | 369..1513 | 5..1149 | 5912 | 99.4 | Plus |
| pyd-PI | 1386 | CG31349-PI | 29..1164 | 14..1149 | 5910 | 100 | Plus |
| pyd-PO | 2395 | CG43140-PO | 241..1376 | 14..1149 | 5910 | 100 | Plus |
