BS30136.complete Sequence
3563 bp assembled on 2012-09-28
GenBank Submission: KX802244
> BS30136.complete
GAAGTTATCAGTCGACATGATGTACGACAACGAGGAAGAACTGTACGAGG
AGGAGAATGCCGAGGAGATCTCTCACGAGCTGTGGCAGGAAGCCTGCTGG
ATCGTGATTAACGCGTACTTCGACGAGAAGGGCTTGGTGCGGCAGCAGCT
GGACAGTTTCGATGAGTTCATTCAGATGTCGGTGCAGCGCATTGTGGAGG
ATTCCCCCGCCATTGAGTTGCAGGCGGAAGCGCAGCACACATCCGGAGAG
GTGGAAACCCCGCCCAGATTCTCGCTGAAATTCGAGCAAATCTATCTTTC
CAAGCCAACACATTGGGAAAAGGATGGTTCGCCCAGTCCTATGATGCCGA
ACGAGGCCCGCCTGCGAAATCTAACTTACTCCGCTCCTCTCTACGTGGAC
ATTACGAAAACCAAGAATGTCGAGGGCCTGGATCCCGTGGAAACGCAGCA
TCAAAAGACTTTCATAGGCAAGATTCCCATCATGTTGAGATCAACGTACT
GTTTGCTATCACAGCTTACTGATCGTGATCTTACGGAGCTGAACGAGTGC
CCGTTGGATCCCGGTGGCTACTTCATCATCAACGGCTCCGAGAAGGTGCT
AATTGCCCAAGAGAAAATGGCCACCAACACAGTGTACGTGTTCAGCATGA
AAGATGGCAAGTATGCCTTTAAGACTGAGATTCGGTCGTGTTTGGAGCAC
AGTTCCAGACCCACGTCTACACTGTGGGTAAACATGATGGCAAGAGGATC
GCAAAACATAAAAAAGTCAGCCATTGGTCAGAGGATTATTGCCATCTTAC
CGTACATCAAACAGGAGATACCCATTATGATTGTGTTTCGAGCATTGGGC
TTCGTGGCCGATCGCGATATTCTGGAGCATATCATCTATGACTTCGACGA
TCCCGAGATGATGGAAATGGTGAAACCTTCTCTGGACGAGGCTTTTGTAG
TCCAAGAGCAGAATGTTGCCTTGAATTTCATTGGAGCTAGAGGAGCACGT
CCCGGAGTCACAAAAGACAAGCGTATAAAGTACGCTAAGGAAATTTTGCA
AAAGGAAATGCTGCCCCACGTTGGAGTATCCGATTTCTGCGAGACCAAGA
AGGCATACTTTTTGGGCTACATGGTTCACCGGCTGCTCTTAGCCTCTTTG
GGCAGGAGAGAACTCGATGATCGAGATCACTATGGAAACAAGCGACTTGA
TCTCGCTGGACCCCTCCTGGCCTTCCTCTTCCGTGGTCTGTTCAAAAACC
TGATGAAAGAGGTGCGCATGTACACACAGAAGTTCATCGATCGCGGAAAG
GACTTCAACCTTGAACTGGCCATCAAGACTAATATTATTACTGATGGTTT
AAGGTATTCCTTGGCCACTGGCAATTGGGGCGACCAGAAGAAGGCGCATC
AGGCGAGAGCCGGTGTCTCCCAGGTGTTGAATCGCTTGACCTTCGCCTCT
ACTCTTTCCCATTTGCGGCGTGTGAATTCGCCAATTGGCAGAGACGGTAA
ACTGGCCAAACCTCGTCAGTTGCACAATACTCTTTGGGGTATGTTGTGTC
CCGCTGAAACTCCTGAGGGAGCAGCTGTTGGTCTGGTGAAGAACCTGGCG
CTCATGGCTTACATTTCTGTGGGATCACAACCTTCTCCCATTCTGGAGTT
CTTGGAGGAGTGGTCTATGGAAAACCTGGAGGAAATTGCTCCTTCTGCCA
TCGCTGATGCTACAAAGATCTTTGTGAACGGCTGCTGGGTGGGCATACAT
CGTGATCCTGAGCAGCTCATGGCAACGCTTCGTAAGTTGCGTCGCCAGAT
GGATATCATCGTGTCAGAGGTGTCTATGATTCGAGACATTCGAGATCGTG
AGATCCGAATCTATACAGATGCTGGTCGCATTTGTCGGCCACTTCTCATC
GTGGAAAACGGATCGCTGCTGCTTAAAAAGACTCACGTGGAGATGTTAAA
GGAGCGAGACTACAACAACTACAGTTGGCAGGTCCTTGTAGCCTCTGGAG
TGGTGGAGTACATTGATACCCTTGAGGAGGAAACGGTCATGATCGCTATG
TCTCCCTACGATCTGAAGCAGGACAAGGATTATGCTTATTGTACCACATA
CACACATTGTGAGATCCATCCAGCCATGATCCTGGGCGTGTGCGCGTCCA
TTATTCCCTTCCCCGATCACAATCAGAGTCCGCGTAACACCTATCAAAGC
GCTATGGGTAAGCAAGCTATGGGCGTTTATATTACCAACTTCCACGTGCG
TATGGACACACTAGCCCACGTACTTTACTATCCGATGAAGCCACTTGTGA
CCACACGTTCCATGGAGTACCTGCGTTTCCGAGAACTACCAGCTGGCATC
AATTCAATCGTGGCTATTCTCTGCTACACTGGCTACAACCAGGAGGATTC
TGTCATTCTGAATGCATCCGCTGTGGAGCGTGGATTCTTCCGCTCTGTGT
TCTACCGATCATACAAGGATTCGGAGAACAAACGTGTCGGTGATCAGGAA
GAGAACTTCGAGAAGCCTCATCGCGGCACCTGCCAAGGAATGAGAAATGC
TCACTACGACAAGTTAGACGATGATGGAATTATTGCCCCAGGAATTCGTG
TATCTGGCGACGATGTGGTTATTGGCAAGACCATTACCCTTCCTGAAAAC
GACGACGAACTGGACAGCAACACGAAGCGTTTCTCCAAACGAGATGCCTC
CACTTTCCTGCGAAACTCTGAGACGGGTATTGTGGACCAGGTGATGCTTA
CGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATTCGAGTGCGCTCGGTG
CGTATTCCGCAGATCGGCGATAAGTTCGCTTCTCGTCACGGACAAAAGGG
AACGTGCGGCATCCAGTACCGTCAGGAGGACATGGCCTTCACATGCGAGG
GATTGGCACCCGATATCATTATTAACCCCCACGCTATCCCATCTCGTATG
ACAATTGGTCACTTGATCGAGTGTCTGCAGGGAAAACTGGGATCCAACAA
GGGAGAGATCGGTGATGCTACACCCTTCAACGATGCCGTCAACGTGCAAA
AGATCTCCACCTTCCTTCAGGAGTACGGCTATCATCTTCGAGGCAATGAG
GTCATGTACAATGGCCACACTGGACGAAAGATTAATGCTCAGGTCTTCCT
GGGGCCCACCTACTATCAGCGTCTTAAGCACATGGTGGACGACAAGATTC
ACTCTCGTGCTCGAGGCCCCGTCCAGATCCTGGTGCGTCAGCCTATGGAA
GGTCGTGCTCGTGATGGTGGCTTGCGTTTCGGTGAGATGGAGCGTGATTG
CCAGATCTCCCACGGCGCCGCTCAGTTCCTGCGAGAACGTTTATTCGAGG
TCTCCGATCCGTACCGCGTACACATCTGCAACTTCTGTGGCCTGATTGCC
ATCGCCAATCTGCGCAACAATACGTTCGAGTGCAAGGGCTGCAAGAACAA
GACGCAGATTTCCCAGGTGCGACTCCCATATGCGGCCAAGCTTCTCTTCC
AGGAGCTGATGTCAATGAACATTGCGCCGCGCCTGATGGTCACCTAAAAG
CTTTCTAGACCAT
BS30136.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII140-RB | 3531 | CG3180-PB | 1..3531 | 17..3547 | 17655 | 100 | Plus |
| RpII140-RA | 3531 | CG3180-PA | 1..3531 | 17..3547 | 17655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII140-RB | 4060 | CG3180-RB | 156..3687 | 16..3547 | 17660 | 100 | Plus |
| RpII140-RA | 3775 | CG3180-RA | 156..3687 | 16..3547 | 17660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14126094..14128269 | 37..2212 | 10880 | 100 | Plus |
| 3R | 32079331 | 3R | 14128335..14129276 | 2203..3144 | 4695 | 99.9 | Plus |
| 3R | 32079331 | 3R | 14129331..14129738 | 3140..3547 | 2040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:20:01 has no hits.
BS30136.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:21 Download gff for
BS30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 155..3683 | 17..3545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:46 Download gff for
BS30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 155..3683 | 17..3545 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:05 Download gff for
BS30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII140-RA | 157..3685 | 17..3545 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:05 Download gff for
BS30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14125947..14125968 | 17..38 | 100 | -> | Plus |
| 3R | 14126096..14128264 | 39..2207 | 100 | -> | Plus |
| 3R | 14128340..14129274 | 2208..3142 | 100 | -> | Plus |
| 3R | 14129334..14129736 | 3143..3545 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:46 Download gff for
BS30136.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9955056..9955458 | 3143..3545 | 100 | | Plus |
| arm_3R | 9951669..9951690 | 17..38 | 100 | -> | Plus |
| arm_3R | 9951818..9953986 | 39..2207 | 100 | -> | Plus |
| arm_3R | 9954062..9954996 | 2208..3142 | 100 | -> | Plus |
BS30136.pep Sequence
Translation from 16 to 3546
> BS30136.pep
MMYDNEEELYEEENAEEISHELWQEACWIVINAYFDEKGLVRQQLDSFDE
FIQMSVQRIVEDSPAIELQAEAQHTSGEVETPPRFSLKFEQIYLSKPTHW
EKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFI
GKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEK
MATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKK
SAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME
MVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLP
HVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPL
LAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLA
TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPR
QLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWS
MENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVS
EVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYN
NYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEI
HPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLA
HVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA
SAVERGFFRSVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKL
DDDGIIAPGIRVSGDDVVIGKTITLPENDDELDSNTKRFSKRDASTFLRN
SETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ
YRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGKLGSNKGEIGD
ATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYY
QRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG
AAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQ
VRLPYAAKLLFQELMSMNIAPRLMVT*
BS30136.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII140-PB | 1176 | CG3180-PB | 1..1176 | 1..1176 | 6147 | 100 | Plus |
| RpII140-PA | 1176 | CG3180-PA | 1..1176 | 1..1176 | 6147 | 100 | Plus |
| RpIII128-PA | 1137 | CG8344-PA | 35..1134 | 28..1175 | 1890 | 36.7 | Plus |
| RpI135-PA | 1129 | CG4033-PA | 40..1123 | 45..1172 | 907 | 27.3 | Plus |
