BS30145.complete Sequence
3950 bp assembled on 2012-10-01
GenBank Submission: KX804899
> BS30145.complete
GAAGTTATCAGTCGACATGCGTTCTCGCAGCAATTCGGGCGTCCGTTTGG
ACTACTATCAGCGCATTGTGCATCGTCTGATCCTGGCCCACCAGGAACCG
GTCACCGGTCTGTTTCCCGCCTCGAATGTGAACTCGCACGCCTGGATCAG
GGACAATGTGTACTGCATCTTGGCCGTTTGGGGCTTGTCCATGGCGTACA
AGAAGATTGCCGATCAGGACGAGGATCGGGCCAAATGCTATGAGCTGGAG
CAGAGCTGTGTAAAGCTAATGCGTGGCCTGCTCATGGCCATGATGAACCA
GAAGGACAAGGTAGAGAAGTTCAAGATGACCCAGAGCCCGTACGATTCGC
TGCACGCCAAGTATTCCAGCAAGAACGGCTTGCCCGTGGTCGATGACAAT
GAGTGGGGTCATCTGCAGATCGATGCCGTGTCCCTGTACCTGCTGATCCT
GGCCCAGATGACGGCCTCCGGCCTGCAGATCGTCTTCTCCCTGGACGAGG
TGTCATTCATCCAGAATCTGGTCTTCTACATCGAGTCAGCGTACTCGATT
CCCGACTATGGCATTTGGGAGCGCGGCGATAAAACCAATCATGGTGAACC
CGAGCTGAATGCCAGCTCCATTGGCATGGCCAAGGCGGCGCTGGAGGCCA
TGAACGAGCTGGATCTGTTCGGAGCCCGTGGCGGTCCGGCTAGTGTCATC
CATGTGCTGGCCGACGAGGCCCACAAATGCCAGGCGGTGCTGCAGTCGAT
GCTGCCGCGCGAGTCGAATAGCAAGGAATTGGATTCCGGTCTGCTGTGCG
TCATCGGCTTTCCCGCCTTTGCTGTGGACGATGCCCAGCTGATACACAAC
ACCAAGGATGCCATTCTATCCCGTCTGCAGGGCAAGTACGGCTGCAAGAG
ATTCTTGCGCGATGGCTATCGCACACCGAAGGAGGATCCCTCGAGGCTAT
ACTACGAGCGCTGGGAGCTGCGCATGTTCGAGAACATCGAGTGCGAGTGG
CCGCTATTCTACTGCTACCTAATCCTGTTCCACGCCTTCCAGAGCGACAA
GCGGGCGGTGGAGGAGTACGCCAGCCGTTTGGAGAAGATCATGGTGCGTT
CGGAAGATGGCATTCTACTTGTTCCCGAGAGCTATGCAGTGCCGCAGGAT
CTGGTGGGCTTCGAGTATCAGAAGCCGGGATCGCAGGTCCGCGAAGTGGT
CGGCCGGTGTCCGTTCCTCTGGGGCCAGTCCCTATTCATCCTCGGCAGAT
TGCTGCAGGAGGGTTTCCTGGCTGTGGGCGAATTGGATCCATTGAATCGT
CGCCTGGGCGCTCAAAAGAAGCCGGACGTCGTCGTCCAAGTGGTCATCAT
TGCCGAGGACAACGAAATCCGCGACAAGCTGGCCGAACACGATCTGCACG
TGCAGACGATCGCAGAGGTGGCGCCCATTGAGGTGCAGCCCGCCCGAGTT
CTGAGTCATCTGTACACCTATTTGGGACGCAATCGGAAATTGGGTTTGAG
CGGCAGAAAGTCACGTGATGTGGGCATCCTTAGCACCAGTAAGCTTTACT
CGCTTAAGGATCGCATATTTGCCTTCACGCCGCAGTTTGCCGACCTGTCG
CGCTTCTATATCGCCTCCGATAACGAACTCATGATCGACATCCTCAAGGG
CGAGATAAATTTCCTCAAGTCCGCTTGGGATCTGCTGGGTCGTCCGCTGG
TCACCCTGGTGCTGAAGCGCATCCATCTAGATCAGGACAAGATCCCGCTG
GCCATGATCCAGACGATGAGGAAACTCAAATCGGGCTACATCAATGGCAC
ACGCGTAATGCTGGGCAGCCTGAAGGACTTTCTCAACACCTCGGCCATCA
CGGATCTGAGCTTTTTGGGCAGCACCGAGGATGGCTATCCGGACCGCCTG
CATCCGGATGTGCAGACCTATTTGGATGAGCATCTGCTGCGCTCGTTTAG
CAATCGCAGCACCATGAATCTGCGCGGCGGACAATTGCGTCCGCGAACAT
TGAGGCGACGCATGTCCTGCAAGGGAGCCATCAAGAAGACGCGCTCCATC
AACGTGGATTCTGATAACCTGGGCATGGAGGGACCTTCTCCGCTGACGGA
ACGTCGCCTGTCCTCGATTGTCCCACCACCATGGCTGCAGGCCAACAAAC
AGAGCCACGTCAGTGTGTTCGCCACGACGCCGGAGGAGGGACCCACCAGC
TCGCCGCTGAGCCTGGGCAACGATCTAATCCGGGAGAATATCTATCCGGT
GGATCCGCACCACAGTCGCTCGGCGATCGACAGACGCAGCGAGTTTGTGC
GCCAGCAAGAGATGCCAAAAATTCTAATACAACGCCATCGTGCCGAAACA
AATTTCGCGGACACAGAAGTGGAGGAGCTGATTGCGATGCTGCGCGAAAC
GGAGAATCTCGAGGAGCAGGGCGACATCCTACAGTACCTGGTGGACACAC
AGGGTCTGGACTTCAATACGGCCGGCCTGGGATTCAAGAATAAGTCGGAG
GAGAATGCCACTCCGAATGCGAATAACGCCGCCGGCACCGGCACCGATCC
GGATAATGCCGCCCATCCGAGTTCCGCCACCGCCAACAGCAATAATAGCC
ATTGCATCGGCAATACTAGCAACATTAGCAGCAGCAGCAGCAACATCAGC
AATCACAACAACATGAGCCCACATGAGAATAACCACGATTCTTCCCAATC
CGAAGGCATGCTCGAAGAGGGACGCGTGGTGACCGTGCGGGATCTGTTGA
AGGGACTCTACGAGAAGGCATGCCAACAGAAGCTCTGGGGACTCGTCCGT
CATACGGCCGGCATGCTGGGCAAACGTGTGGAGGATTTGGCCAAAGCGGT
AACAGATCTGCTCGTCCGACAGAAGCAGGTCACCGTGGGAATGCCACCAA
ATAATGAGCACACCATTACGGCGCCGCTGCCGGAAGTCGAGCTGCGTCAG
CTAATCCACGATGCCTATGGTGACGATGAGAGTACGGCGATGTTGACGCA
GGAGTTGATGGTCTATCTGGCCATGTTCATACGCACCGAGCCGCAGCTGT
TCCACGAGATGCTACGCCTGCGCGTCGGCCTGATCATCCAGGTAATGGCC
AAGGAGCTGTCCCGCACCCTCAACTGCGACGGCGAGGCGGCGTCGGAGCA
TTTACTTAACCTCTCGCCCTTCGAGATGAAAAATCTACTGTATCACATAC
TCAGCGGCAAGGAGTTTGCTGTTAGTAGCGTCGCCCGTGGCAATCTGTCC
ATTGTGAGCTGCAAGAGCAGTCGCGTTAGCAAGAAGAGCCAAATCGGCCT
GGGTGATCCGGAGGGCGAAGACGCCCTCATAGCCACGATTGACGACCGCC
AAGGTCAGTGGCTGCGCCGGCGACGTCTGGACGGCGCCCTCAATCGTGTG
CCCCGCGATTTCTATTCGCGCGTGTGGACCGTACTGGAGAAGTGCCAGGG
TCTGGCCATCGAGGGACGTGTCCTGCAGCAGAGTCTCACGCAAGAGATGA
CGCCGGGCGAACTGAAATTTGCGCTGGAGGTGGAGACGGCCCTCAACCAG
ATACCGCAGCCCGAGTACAGGCAGCTGGTGGTCGAGGCTTTAATGGTGCT
CACACTCGTTACCGAGCACAATATGGTGCCGTCGCTGGGTGGCGTCATCT
ACGTGGAGCATCTGGTGCACAAGGCCAATCAGTTGTTCCTCGAGGATCAG
CGCAAGGTGCAGGGCGATGCAACGCTGTGCTGCGCCAAGATTAAGGACGG
CAAGGAGCAGCAGCAGGCCGCCTCCGGTATGCTACTCTGCGGCGGTGCCG
CCTACATATGCCAGCATCTGTATGACAGTGCTCCCAGCGGCAGCTATGGT
ACCATGACCTATATGTCCCGGGCGGTGGCCCTTGTGCTCGACTGTGTGCC
GAAGCACGGCGAGATGGAGTGCGCCATCTCCTAAAAGCTTTCTAGACCAT
BS30145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7766-RC | 3918 | CG7766-PC | 1..3918 | 17..3934 | 19590 | 100 | Plus |
| CG7766-RA | 3744 | CG7766-PA | 1..2515 | 17..2531 | 12575 | 100 | Plus |
| CG7766-RD | 3684 | CG7766-PD | 1..2455 | 17..2471 | 12275 | 100 | Plus |
| CG7766-RA | 3744 | CG7766-PA | 2515..3744 | 2705..3934 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7766-RC | 4873 | CG7766-RC | 325..4243 | 17..3935 | 19595 | 100 | Plus |
| CG7766-RA | 4699 | CG7766-RA | 325..2839 | 17..2531 | 12575 | 100 | Plus |
| CG7766-RD | 4639 | CG7766-RD | 325..2779 | 17..2471 | 12275 | 100 | Plus |
| CG7766-RA | 4699 | CG7766-RA | 2839..4069 | 2705..3935 | 6155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9101565..9102234 | 1262..593 | 3350 | 100 | Minus |
| X | 23542271 | X | 9094411..9095009 | 3828..3230 | 2995 | 100 | Minus |
| X | 23542271 | X | 9102491..9103071 | 597..17 | 2905 | 100 | Minus |
| X | 23542271 | X | 9095394..9095826 | 2963..2531 | 2165 | 100 | Minus |
| X | 23542271 | X | 9098080..9098415 | 2064..1729 | 1665 | 99.7 | Minus |
| X | 23542271 | X | 9101096..9101421 | 1585..1260 | 1630 | 100 | Minus |
| X | 23542271 | X | 9095066..9095333 | 3230..2963 | 1340 | 100 | Minus |
| X | 23542271 | X | 9097756..9098007 | 2312..2061 | 1260 | 100 | Minus |
| X | 23542271 | X | 9097355..9097513 | 2471..2313 | 795 | 100 | Minus |
| X | 23542271 | X | 9100513..9100660 | 1730..1583 | 740 | 100 | Minus |
| X | 23542271 | X | 9094242..9094362 | 3935..3815 | 560 | 97.5 | Minus |
| X | 23542271 | X | 9096766..9096826 | 2531..2471 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:32:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6833 | 2578..2668 | 203 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2409 | 2582..2683 | 193 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 2578..2685 | 187 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6884 | 2578..2668 | 185 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6812 | 2577..2668 | 181 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6840 | 2578..2663 | 180 | 69.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1143 | 2574..2663 | 180 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1505..1620 | 2575..2694 | 176 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2533 | 2570..2663 | 173 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2470 | 2578..2663 | 169 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2676 | 2585..2671 | 166 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2488 | 2578..2663 | 161 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2667 | 2584..2653 | 161 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6851..6947 | 2578..2671 | 154 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2440 | 2578..2663 | 153 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6807 | 2590..2685 | 153 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1180 | 2578..2680 | 153 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2385 | 2589..2668 | 148 | 65 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3209..3330 | 2548..2668 | 147 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2884 | 2578..2673 | 143 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6627 | 2628..2724 | 139 | 65.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1122 | 2604..2663 | 138 | 70 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 920..1017 | 2570..2668 | 133 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6786 | 2612..2685 | 130 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2358 | 2618..2668 | 120 | 70.6 | Plus |
BS30145.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 15:21:41 Download gff for
BS30145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 309..4224 | 17..3932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:01 Download gff for
BS30145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 325..4240 | 17..3932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:25 Download gff for
BS30145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7766-RC | 325..4240 | 17..3932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:25 Download gff for
BS30145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9101096..9101419 | 1262..1585 | 100 | <- | Minus |
| X | 9094245..9094348 | 3829..3932 | 100 | <- | Minus |
| X | 9094411..9095008 | 3231..3828 | 100 | <- | Minus |
| X | 9095066..9095333 | 2963..3230 | 100 | <- | Minus |
| X | 9095395..9095825 | 2532..2962 | 100 | <- | Minus |
| X | 9096766..9096825 | 2472..2531 | 100 | <- | Minus |
| X | 9097355..9097513 | 2313..2471 | 100 | <- | Minus |
| X | 9097756..9098007 | 2061..2312 | 100 | <- | Minus |
| X | 9098084..9098413 | 1731..2060 | 100 | <- | Minus |
| X | 9100513..9100657 | 1586..1730 | 100 | <- | Minus |
| X | 9101566..9102233 | 594..1261 | 100 | <- | Minus |
| X | 9102495..9103071 | 17..593 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:01 Download gff for
BS30145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8991388..8991546 | 2313..2471 | 100 | <- | Minus |
| arm_X | 8988278..8988381 | 3829..3932 | 100 | <- | Minus |
| arm_X | 8991789..8992040 | 2061..2312 | 100 | <- | Minus |
| arm_X | 8988444..8989041 | 3231..3828 | 100 | <- | Minus |
| arm_X | 8989099..8989366 | 2963..3230 | 100 | <- | Minus |
| arm_X | 8989428..8989858 | 2532..2962 | 100 | <- | Minus |
| arm_X | 8990799..8990858 | 2472..2531 | 100 | <- | Minus |
| arm_X | 8992117..8992446 | 1731..2060 | 100 | <- | Minus |
| arm_X | 8994546..8994690 | 1586..1730 | 100 | <- | Minus |
| arm_X | 8995129..8995452 | 1262..1585 | 100 | <- | Minus |
| arm_X | 8995599..8996266 | 594..1261 | 100 | <- | Minus |
| arm_X | 8996528..8997104 | 17..593 | 100 | | Minus |
BS30145.pep Sequence
Translation from 16 to 3933
> BS30145.pep
MRSRSNSGVRLDYYQRIVHRLILAHQEPVTGLFPASNVNSHAWIRDNVYC
ILAVWGLSMAYKKIADQDEDRAKCYELEQSCVKLMRGLLMAMMNQKDKVE
KFKMTQSPYDSLHAKYSSKNGLPVVDDNEWGHLQIDAVSLYLLILAQMTA
SGLQIVFSLDEVSFIQNLVFYIESAYSIPDYGIWERGDKTNHGEPELNAS
SIGMAKAALEAMNELDLFGARGGPASVIHVLADEAHKCQAVLQSMLPRES
NSKELDSGLLCVIGFPAFAVDDAQLIHNTKDAILSRLQGKYGCKRFLRDG
YRTPKEDPSRLYYERWELRMFENIECEWPLFYCYLILFHAFQSDKRAVEE
YASRLEKIMVRSEDGILLVPESYAVPQDLVGFEYQKPGSQVREVVGRCPF
LWGQSLFILGRLLQEGFLAVGELDPLNRRLGAQKKPDVVVQVVIIAEDNE
IRDKLAEHDLHVQTIAEVAPIEVQPARVLSHLYTYLGRNRKLGLSGRKSR
DVGILSTSKLYSLKDRIFAFTPQFADLSRFYIASDNELMIDILKGEINFL
KSAWDLLGRPLVTLVLKRIHLDQDKIPLAMIQTMRKLKSGYINGTRVMLG
SLKDFLNTSAITDLSFLGSTEDGYPDRLHPDVQTYLDEHLLRSFSNRSTM
NLRGGQLRPRTLRRRMSCKGAIKKTRSINVDSDNLGMEGPSPLTERRLSS
IVPPPWLQANKQSHVSVFATTPEEGPTSSPLSLGNDLIRENIYPVDPHHS
RSAIDRRSEFVRQQEMPKILIQRHRAETNFADTEVEELIAMLRETENLEE
QGDILQYLVDTQGLDFNTAGLGFKNKSEENATPNANNAAGTGTDPDNAAH
PSSATANSNNSHCIGNTSNISSSSSNISNHNNMSPHENNHDSSQSEGMLE
EGRVVTVRDLLKGLYEKACQQKLWGLVRHTAGMLGKRVEDLAKAVTDLLV
RQKQVTVGMPPNNEHTITAPLPEVELRQLIHDAYGDDESTAMLTQELMVY
LAMFIRTEPQLFHEMLRLRVGLIIQVMAKELSRTLNCDGEAASEHLLNLS
PFEMKNLLYHILSGKEFAVSSVARGNLSIVSCKSSRVSKKSQIGLGDPEG
EDALIATIDDRQGQWLRRRRLDGALNRVPRDFYSRVWTVLEKCQGLAIEG
RVLQQSLTQEMTPGELKFALEVETALNQIPQPEYRQLVVEALMVLTLVTE
HNMVPSLGGVIYVEHLVHKANQLFLEDQRKVQGDATLCCAKIKDGKEQQQ
AASGMLLCGGAAYICQHLYDSAPSGSYGTMTYMSRAVALVLDCVPKHGEM
ECAIS*
BS30145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7766-PC | 1305 | CG7766-PC | 1..1305 | 1..1305 | 6731 | 100 | Plus |
| CG7766-PH | 1358 | CG7766-PH | 1..1358 | 1..1305 | 6469 | 93.5 | Plus |
| CG7766-PG | 1338 | CG7766-PG | 1..1338 | 1..1305 | 6388 | 93.8 | Plus |
| CG7766-PA | 1247 | CG7766-PA | 1..1247 | 1..1305 | 6327 | 95.3 | Plus |
| CG7766-PB | 1248 | CG7766-PB | 1..1248 | 1..1305 | 6143 | 92.6 | Plus |
