BS30152.complete Sequence
4493 bp assembled on 2012-11-15
GenBank Submission: KX803731
> BS30152.complete
GAAGTTATCAGTCGACATGCCGCCACACATCCTTGGAAGCGCCAGCGGAA
GCAGCTCGACAGCGGCCGCCTCTCCGCCCACCAGCAGCGCCAGCCAGACG
CCTCCATCGCCAGCCATCCACCACAGTCATCTTAGCCAGCACAACGCAAC
CAGCGCCATGTCCAAGCCGACGACGCCTCAGCGCCACGGCAACCCCAGCC
TCCTTCCCACGCTCCAGTGGCCGTGGAACACCAGCCTGGGCAGCACCTCC
ACTGCCGTGCCCGCCGCCTCGGCCAACAAAAACAAGCGGACGGCGGCCGG
ATCTGGGGCGGCATTAGGATTGAGCGGTGAAGGGTCCTGTTTAACCGGTG
GAGGAGCCGCGTCGGCTAAGAAAGCGCGCAGCGATTTGCCCGGCTCCTTT
GACGCAAGCAAAAGACTGAAAGTGGCCGCTATGGAGGAGTCACAGACCAA
GATTACCGGTTTTTTTAAATCCCAAATGAAGCCGTCTCCTGGCGGCGGTA
AGCTATCGCCGCAGCCCGGCCAGCAAAGCAATCCGGCCAACACGCTGACC
ATGAGCACGCCCGCAACTACCGCCTCGCTGAACAAGTACTTCAATATCCT
GTCGCAGCTGAAAGAGCAGAAGGCCCAACAGCAACAACAGCAGCAGCAGG
CATCCAAGACCTTGCCCACTCCAGCTCCAGTCGCCCCAGTCCCATCTGCG
CCCCCTGTCGCGCCCGTGGTCGTCACTCCCAGTCCCAGTTTGCCCGTCCC
GGCGCTGAAAAAGATCGAACGCAGCAACAAGCAGCCTGCCAAGATAGCGC
AGGTGGCACCCAATCTGCGCAAGACGCCCAGCAGTGGATCTTCAGGCAGC
TCCTCGTCGTCCTCGTCTAGCTCCTCAAATGGCTCGAATACGGGAAAATC
GCCAACGAAGAAACACGTGGCCATCGCACCCAGGACGCCGGAGATGAAAC
AGCAGCAGCAGCAGGGAAAGGCGGCCATGGTCTACCGACCGCCAGTAACA
AGCACCGCTTTGAAGCAAAAGCAGATCTCACCACCCGCCCCCGTTGCGGC
CCACACACCCGCCCCAGCGCCAGCATTAAATCCAACGCCCGCCCCCGCCA
ATCCCACGCTTTACCAGCTGCCCGTACAGCTTCCTAATCTAGTCCAGCTT
CCGCCTCAGCTGGCGGCTGCCGCCAATATTATGCAGCTTAATAACGTGGC
CAAAGCTGCAGTGGCTGCGGCGGCCACCAACAACGCGGCCGCGCAAGCGG
CACAGGCTGCTCAGGCAGCTGCTGCCCAGTACTTCCTGAACGGCACTGTC
TTTAAGCTGCAACAGGTGACTACGGCCACGACGACGACGGCCACCACGGC
CACAGCAGCGGCGGCCCCAGCTGGCAATCCCTTTGGACTGCTTAACTTAG
CCACGGCGGGCAATCCCTTTGGCTTACCCAATGCCAATGGGCAATTCCCC
ATTGAAGCCATTCCGGGAGCTGGAAGCTATCTCCATCATCAGCTGCTTTT
GGCCAGACAGAACAACATGAGTTTAAACGAAACTATGGCTTCCAATTCTT
GCGGCAACATGAACTTTGTTAATCCACTTAACAATCAGCAAGTTGGACTC
AAAGATAACAAATTATATATTGTAAACTCGGCCGAGTACCTAGGATACTT
AATGAGTCTGCAGATAGCTCTTAATAACCAACAGCACCAGCAACAACAAA
TCATATCTGCCACACAGCCGCCACCACTGGCAGCCACAAACAATAACAGT
ACGAACACTGCCACTCAGCCGCCGCCATTGGCAGCTACGAACAATACCAA
TTCGAACACTGCCAACAATTCGACTGCCAGCAACAGTATCAACCATAATG
CCTCGAATAATCTAAGCAATATCAACAACACTGCCATACAGCCTCAGCGG
GCGATTGTGAAGCCGCCATTGCACAGTTCCACGCAACCGCCGCCGCTTGT
GACGATTTCCTCCATGCCCGCGTGCTCACCGGCTGCCGCATCTTCGCCAG
CGGCCAAACGGTCACTGCCCGCCGCCAAGCCTTACCAGAAGCGGCTGACA
GCAAAGGGCAGAGTGGGGACAGCACCGATAATCGCAACGCCTACAACGCC
GCCTCCTCTGGTACCCACGTCTGCTACTAAGGAGCTGGGTCAGTTGCGCA
AGAGTACGGGAACCACGGGAACCCCTACTGGCACACCCACACCAACGCCA
CCGCTAGTAAGCATCGCACCCTCGAAGCTGACCCCAACGCTGAGCGTTTC
GAAGCAAGGACCGACAATGAAGCTTGCAAACAGCGCTCCCGATCTCTTTG
ACCTGGTGAAGAACTCAAAGCTGGTAGCCAAGGTTTCGCAACCGTTGACG
CCGCTTCCCTTCAGTTCCCCCAGCAGCAGTAGCAACGGAAGCCACGGTAG
CCACGGTATGCGATCCTCGCCGGCCCTCTCCACGTCAAACTCCTGCACCC
TGTCTGCATTTAGCAAGATCAAGGTGGAAACAACGGAGCTGGCTTCCCAG
ACGGGCTCCCTGACCTCTTCCTCAATACCTACAATATCACTTAAGCCTCA
GAGCTTCGCCGGGCAGCTGCCCAAAAGGGAACCGGAATCGGAAACCGACA
CGCTGAAGCACGACCTTTTGCCAGACTGCACAAACAGTAACTCAAACTCA
AATTCCTGTAGCAGCAGCACCTATTCGCACTCGGTTAGTTCGGCAGCTGA
TCTCTCATTAGAGGCCTCTACGCCCGCTCCATCACCTTCACCTTCAGCAT
CGCCTTCCGGCTTGGGATCACCCTCGCCGGCGGCCAGCAACTTGAGTGCC
AGCAGCCGGCGAGCTGCAAGCCAAACTGATATGCTAAGTGAACTGGTCAC
TTCGTCGTGCATCTCCAGCGGCGGCGATGACTGCTCTCAAGCCACAGACT
CGCCTCCAATGCCGGCACTCCCTCTGGCCAAGAGTGAGGATGCTACCACT
CCCATTTCCACGGTCAGCGGAGGAAGCAGCAGTGGGAGTAGCAATTACGA
TGAAGAGGACGACAAGTCGGTGGCCTCGCTGGAAACTCATCAGACGCACA
AGCGGCTAAGGGACCTGCCCACGCCCGAGTCAGGAATCGGTGGAAGTCTG
AGTAACAGCGAGAGCAGTAACTCAATTGCCGATGCCATTTCCTCCAAATC
CGCCTCTGTGGGACCACCCACTACTGCAGCGAGCAGTGCTTCTTCCTCCG
CATCCGACAGCAACTCACTGGCTAGCAATGCACCATCCCCAGCCTCTCCG
GAGGATTGTTCAGCCGCTCCTTCGCCCGCCTGCTCCGCCTCCACTACCGG
ATCCATTCCGCCTAGCACTGTGGTGGACATTGCGATGGTGGAAGCCACCA
GCAAGAGTCTGCCAAAGAGCGCTATATCTCCAATCCTCTCGCAGCCAAAG
ACCATCCGCTTTCCGGCTGGAGCAGGTGCGAGTGGCAAAGGTGGAAAGCG
GCATGACGGCGTCTGCTACTGGGACAAGTGCAACAAGAAGCATGAGAGCA
ACTCCAAGTTGTTGGACCACATGCAGACGCACCACGTCAATACACAAACA
GGTCCCTTCGCCTGTCTGTGGGTGGGCTGCAAGGTGTATAACAAGGAGTC
ATGCTCTCGTCGCTGGCTGGAGCGCCACGTGCTCTCCCATGGAGGCTCCA
AGCAATTCAAGTGCATCGTGGAGGGTTGCGGCCTACGGTTCGGCTCACAG
TTGGCGTTGCAAAAGCATGTTAACAACCACTTTAATGCCACTGACAATGC
AAGGGAGAGCACCAGCAAGCGCACCTCTGATCCGCCAGTGCCCAAACAAC
TCCGTAAGAATGGCAAGAAGCTACGATACCGTCGTCAGCCTTTCTCAGCT
CGCATGTTTGACTTCTTCGACACGGGCATAATGGAGGGACTACAGCACCG
CCTGCGCCAGATTAGCACACTCACCAACGGTGCCCAGGCCATCGAGTTCC
AGGGGCAGTGCATGATGCGACGCCGCAATAGCCAAGGCGGCTACGAGTGC
TTCGTGCGATGGTCCCCGCGCGAGATCATTTCCGACGAGTGGCTGCCGGA
GTGTCTTAACCGAACGCGTCAGCACACTAAAGTACTACACATCAAGCAAA
TGCGGCCAGCCGAAAAAACTCGCGTGGATAGCCTGCTCAGCACGGCTTTT
CGCTTACGCTATGACTCCCACTTGTTCGCCGACGATTATAATGTCAACGA
GCAGCAGGTAGGCGAGGCGAGCGGTAGCGACTGCGACGAGGATGGGGATG
GGGATCAAGAGGAGGAGGATTTAGAGGATCAAGATGAAGATGAAGAGGAA
GACGGAAGCAGTAGTTCGCGCAGTGCGAGTTGTGAGACGGTGTCCAGCTA
TCAGCAGGTACTTAGCATCGCCAAGCTGCAGATGCAACAGCGGCGTAAGC
ATCCGCGAAAACCACCCAAAGTGACACCGCCGGCGAGGGAAAAGCTGGTT
CCAACGGACGCACTGGTGCCCATTTAGAAGCTTTCTAGACCAT
BS30152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jing-RD | 4461 | CG9397-PD | 1..4461 | 17..4477 | 22290 | 100 | Plus |
| jing-RI | 5235 | CG9397-PI | 775..5235 | 17..4477 | 22290 | 100 | Plus |
| jing-RH | 4461 | CG9397-PH | 1..4461 | 17..4477 | 22290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jing-RD | 4817 | CG9397-RD | 228..4688 | 17..4477 | 22290 | 100 | Plus |
| jing-RI | 6397 | CG9397-RI | 1808..6268 | 17..4477 | 22290 | 100 | Plus |
| jing-RH | 5126 | CG9397-RH | 537..4997 | 17..4477 | 22290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6615936..6617545 | 1529..3138 | 8050 | 100 | Plus |
| 2R | 25286936 | 2R | 6614229..6615741 | 17..1529 | 7550 | 99.9 | Plus |
| 2R | 25286936 | 2R | 6617611..6618172 | 3139..3700 | 2810 | 100 | Plus |
| 2R | 25286936 | 2R | 6618803..6619253 | 4027..4477 | 2255 | 100 | Plus |
| 2R | 25286936 | 2R | 6618561..6618741 | 3846..4026 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 6618238..6618388 | 3698..3848 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 21005331..21005422 | 1553..1644 | 265 | 85.9 | Plus |
Blast to na_te.dros performed 2014-11-28 12:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6688..6765 | 566..648 | 160 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6883 | 538..680 | 152 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6786 | 604..648 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6807 | 604..648 | 144 | 80 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1138 | 604..649 | 140 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 508..649 | 137 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6840 | 604..648 | 137 | 82.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1103..1159 | 605..662 | 134 | 72.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6872..6958 | 605..695 | 131 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2357 | 604..649 | 131 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2402 | 521..649 | 129 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1590 | 605..657 | 127 | 73.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6875 | 605..699 | 127 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2354 | 605..649 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2623..2659 | 612..648 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2419 | 605..648 | 121 | 75 | Plus |
BS30152.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-15 12:01:28 Download gff for
BS30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RI | 1555..6015 | 17..4477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:17 Download gff for
BS30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RH | 537..4997 | 17..4477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:50 Download gff for
BS30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jing-RH | 537..4997 | 17..4477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:50 Download gff for
BS30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6614229..6615741 | 17..1529 | 99 | -> | Plus |
| 2R | 6615937..6617545 | 1530..3138 | 100 | -> | Plus |
| 2R | 6617611..6618172 | 3139..3700 | 100 | -> | Plus |
| 2R | 6618241..6618388 | 3701..3848 | 100 | -> | Plus |
| 2R | 6618564..6618741 | 3849..4026 | 100 | -> | Plus |
| 2R | 6618803..6619253 | 4027..4477 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:17 Download gff for
BS30152.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2501734..2503246 | 17..1529 | 99 | -> | Plus |
| arm_2R | 2503442..2505050 | 1530..3138 | 100 | -> | Plus |
| arm_2R | 2505116..2505677 | 3139..3700 | 100 | -> | Plus |
| arm_2R | 2505746..2505893 | 3701..3848 | 100 | -> | Plus |
| arm_2R | 2506069..2506246 | 3849..4026 | 100 | -> | Plus |
| arm_2R | 2506308..2506758 | 4027..4477 | 100 | | Plus |
BS30152.pep Sequence
Translation from 16 to 4476
> BS30152.pep
MPPHILGSASGSSSTAAASPPTSSASQTPPSPAIHHSHLSQHNATSAMSK
PTTPQRHGNPSLLPTLQWPWNTSLGSTSTAVPAASANKNKRTAAGSGAAL
GLSGEGSCLTGGGAASAKKARSDLPGSFDASKRLKVAAMEESQTKITGFF
KSQMKPSPGGGKLSPQPGQQSNPANTLTMSTPATTASLNKYFNILSQLKE
QKAQQQQQQQQASKTLPTPAPVAPVPSAPPVAPVVVTPSPSLPVPALKKI
ERSNKQPAKIAQVAPNLRKTPSSGSSGSSSSSSSSSSNGSNTGKSPTKKH
VAIAPRTPEMKQQQQQGKAAMVYRPPVTSTALKQKQISPPAPVAAHTPAP
APALNPTPAPANPTLYQLPVQLPNLVQLPPQLAAAANIMQLNNVAKAAVA
AAATNNAAAQAAQAAQAAAAQYFLNGTVFKLQQVTTATTTTATTATAAAA
PAGNPFGLLNLATAGNPFGLPNANGQFPIEAIPGAGSYLHHQLLLARQNN
MSLNETMASNSCGNMNFVNPLNNQQVGLKDNKLYIVNSAEYLGYLMSLQI
ALNNQQHQQQQIISATQPPPLAATNNNSTNTATQPPPLAATNNTNSNTAN
NSTASNSINHNASNNLSNINNTAIQPQRAIVKPPLHSSTQPPPLVTISSM
PACSPAAASSPAAKRSLPAAKPYQKRLTAKGRVGTAPIIATPTTPPPLVP
TSATKELGQLRKSTGTTGTPTGTPTPTPPLVSIAPSKLTPTLSVSKQGPT
MKLANSAPDLFDLVKNSKLVAKVSQPLTPLPFSSPSSSSNGSHGSHGMRS
SPALSTSNSCTLSAFSKIKVETTELASQTGSLTSSSIPTISLKPQSFAGQ
LPKREPESETDTLKHDLLPDCTNSNSNSNSCSSSTYSHSVSSAADLSLEA
STPAPSPSPSASPSGLGSPSPAASNLSASSRRAASQTDMLSELVTSSCIS
SGGDDCSQATDSPPMPALPLAKSEDATTPISTVSGGSSSGSSNYDEEDDK
SVASLETHQTHKRLRDLPTPESGIGGSLSNSESSNSIADAISSKSASVGP
PTTAASSASSSASDSNSLASNAPSPASPEDCSAAPSPACSASTTGSIPPS
TVVDIAMVEATSKSLPKSAISPILSQPKTIRFPAGAGASGKGGKRHDGVC
YWDKCNKKHESNSKLLDHMQTHHVNTQTGPFACLWVGCKVYNKESCSRRW
LERHVLSHGGSKQFKCIVEGCGLRFGSQLALQKHVNNHFNATDNARESTS
KRTSDPPVPKQLRKNGKKLRYRRQPFSARMFDFFDTGIMEGLQHRLRQIS
TLTNGAQAIEFQGQCMMRRRNSQGGYECFVRWSPREIISDEWLPECLNRT
RQHTKVLHIKQMRPAEKTRVDSLLSTAFRLRYDSHLFADDYNVNEQQVGE
ASGSDCDEDGDGDQEEEDLEDQDEDEEEDGSSSSRSASCETVSSYQQVLS
IAKLQMQQRRKHPRKPPKVTPPAREKLVPTDALVPI*
BS30152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jing-PD | 1486 | CG9397-PD | 1..1486 | 1..1486 | 7622 | 100 | Plus |
| jing-PI | 1744 | CG9397-PI | 259..1744 | 1..1486 | 7622 | 100 | Plus |
| jing-PH | 1486 | CG9397-PH | 1..1486 | 1..1486 | 7622 | 100 | Plus |
| jing-PJ | 1471 | CG9397-PJ | 1..1471 | 1..1486 | 7511 | 98.9 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 297..849 | 569..1142 | 241 | 25.1 | Plus |
