BS30155.complete Sequence
4958 bp assembled on 2012-09-28
GenBank Submission: KX803993
> BS30155.complete
GAAGTTATCAGTCGACATGCAGAGATCCACAGACCGGTTGCGCCGGCTGA
AAAAGCTGAAGAGCGTTACGGGAGCGCAGGATGGCGTTGGTGGCGGCGAT
GCGGCGGCGACGGCGGATAATCGGACCTCCGCATCGTCGGACACGAACGG
AGCAGCCGCCAGTAGCGGAGCCGGCGGCAATCAGCCAGGCACACTCAATC
CGGAGGTCTTCAAGCACTTGGACAAATCCGGACGCAGTGAATTCCTGAAG
TACCTCAAGCATCAGTTGCAGGATGCGGCGGATACGCCCGTTTACGACAA
GAACGGCGTCTTTAAGCAGGGCATCTCCAATGCCATATACCAGCTTCTTT
GGCAGACTCTGCGCTTCACTCACAAAAAAGACATAGTACTCCACCTGCTC
CTGGAAGTCGTGGCCCTCCATGCGGACTTTCCCAGCCTTATAGTGGACGT
GGTTAACATTCTGGACAGCGAAACCTCCCTTATAACCGATGGACTTCAGG
AAGAACGACATGCCTTTGTGCAACTTGTTAAAGACTTGGACAGGGTGATT
CCAGAAAGTCTTTTGAAAGAACGTTTGGAAATCGATACGTTGCAGGAGGC
GGGAATCGTCAAGAACAAGAGCTTTTACTCTAAGTTCATCAAGGTCAAAA
CCAAGCTATACTACAAGCAGCGTCGGTTTAACCTTTTCCGCGAGGAGAGT
GAAGGGTTTGCCAAGCTTATCACAGAGCTAAACCAGGAGTTCGACGAGAA
CACCACTCCAGAGAGCATAATGGATATCATAAAATCCCTTATAGGCTGCT
TCAATCTGGATCCTAATCGTGTGCTGGACATTATTATCGAGTCCTTTGAA
ACTCGTCCGGATCGATGGAACTTGTTCATACCCCTGCTGCGCAGCTACAT
GCCCACTGGTGCCATTATTTGCGAAGTCCTCGGCTACAAGTTCTGCCACT
TTAAGGACTCCCGCACTCCCCGCTCGTTATATCATGTATGTGCTCTTTTG
CTTAAGCATGGCGTCATTGCTCTGAACGATGTATACGTGTGGTTGACTCC
AAACGATGGGAGCATTAAGGCGGACTGGGAGGAAGACCTGGCTGATGCCA
GGGAAATGGTCCGCAAGCTGAACCTTATACAAACCAATAAGAAGGAAGAC
GAAAAGGATCCACCACCGCCGCCTTCAGTTAAGAAGTTCAATGAGGAAAA
ATACAATGCAAACCAAAAATTTGGCCTCTGCGAAGCTTTGCTTAAAGTTG
GCGACTGGGAGAATGCGTACAAGATCATCCAGAAGCTTCCCGAGCAGGCG
GTTGTATTGCAGGAACCCATTGCCCGTGCCATTGCCGATCTGATTCACCT
GTCCGTGGAGAATATTTATTACAAAAAGTGTTTTAAGGCTCCCGCAGGAC
GTAGGCCGAGCCGCAATCGCCTGTATGAGGATTCCAAGTTGGTGGCCAAG
ATGCAGGCAAAGGAATTCGGCGACTTAAGGAAGTACACCTGGCCGATGGC
TAACGTGTTGGGACCTGCCATGCACTACGACACTGTGCTGATGTACAAAC
TAATCCGTATTATGCGGAAACTAGTTGTCGATATGGGCGTGGACAGCCTA
AATGGACCTCCGCCGAATTCGGAAGCAGAGCAGCACTACTATGACATTAT
GAGCTCGCTGGACGCCTGCATTCTACCCTCCCTTCTATACTTGGACAACA
ACTGTTCCATGTCCGAAGAGATCTGGGCTGTGCTTAAATATTTCCCGTAT
CATTTTCGCTACAGTTTGTATGCGCGTTGGAAGAACGACAGCTATCAGCT
GCATCCCAATTTGATCAGGAGATGTGGATTGGCACAACGGGATATTAAGG
CCCTAATGAAGCGCGTGAGCAAGGAGAACGTCAAGCAGCTGGGACGACTG
GTAGGAAAGTATAGCCATTGTGCGCCAGGACTGCTTTTCGACTATATTCT
CTTGCAAATTCAAATCTATGATAATCTAATTGGTCCGGTCTGCGACCTGC
TCAAGTATCTTACTGCCTTATCCTTTGACTGTTTGGGATACTGCATCATC
GAGTCGTTGACGTTAACAGGTCGTCTCAGGTTCAAGGATGACGGCACTTC
GTTATCCTTGTGGCTGCAAAGTCTTGCCTCCTTCTGCGGCACCATATACA
AGAAGTACAGCATTGAGCTAAGTGGTCTGCTTCAGTATGTGGCCAATCAG
TTAAAGTCGCAGAAGAGCCTGGACTTACTGATTCTGAGGGAGATCGTGCA
TAAGATGGCAGGCGTGGAGTCCTGCGAGGAGATGACTAATGATCAGTTGC
AAGCCATGTGTGGTGGTGAGCAGCTCAGGGGAGAGGCTGGCTACTTTAGT
CAAGTGAGGAATACGAAAAAGTCCTCTAATCGCCTAAAGGAGGCATTGGC
CAATAACGATCTTGCCGTGGCTATTTGCCTTTTGATGGCTCAACAGAAAC
ACTGCGTCATTTATCGTGAGACGGCGGCACACAGCCATTTGAAGTTAGTG
GGAAATCTGTATGATCAGTGCCAAGACACACTCGTCCAGTTTGGTACGTT
CCTAGGCTCCACCTATTCTGTGGATGAGTATGTGGAGCGGTTGCCCTCGA
TTATAACCATGCTTCGAGAGTACCACATAAACACGGATGTGGCCTTCTTC
TTGGCTAGGCCCATGTTTACTCATCAGATCAATCAAAAATATGATCAATT
GCGCAAGGATGACCCTAACGCCAAGAAGCTCACCACGACGCAAAAGCTCC
AGAAGTATTTGGAAGCTACGCAGCTGATCATGAACCCTATTGTAGAGTCT
GTTCGTCCACTGCACAGCTCCAAGGTGTGGGAGGACATTAGTCCGCAGTT
CCTGGTAACTTTTTGGAGTCTGAGCATGTACGATCTGCACGTGCCGAACG
AAAGCTATCAGAGGGAGGTTGCCAAGCTAAAGCAGCTGGCCCAGCAAGCG
GCAGAAGGCAAAGACTCTAACCAATCTAAGAACAAGAAGGAGCAGGAGCG
CTACATTGCGCTAATGGAGAAGCTGAACGACGAGCGAAAGAAGCAGCATG
AGCACGTTGACAAGATCTCGCAGCGTTTGCAGGAGCAAAAAGATAGTTGG
TTCCTTCTACGATCTGGCAAGTCCGCAAAGAACGACACCATCACGCAATT
CCTGCAGCTCTGTCTCTTCCCGCGTTGCACCTTCACAGCTCTGGATGCGT
TGTATTGCGCGAAGTTCGTGCACACCATCCACAATCTCAAGACATCGAAC
TTCTCAACCTTGCTGTGCTATGATAGGATCTTTTGTGACATCACTTATTC
GGTAACATCGTGCACTGAGGGCGAGGCTACGCGGTACGGACGCTTTTTGT
GCGCCATGCTCGAGACCGTGATGCGTTGGCATGCGGATCAGGCGGTGTTT
AATAAGGAGTGCGCCAATTATCCTGGTTTTGTGACAAAGTTTCGTGTTAG
CAATCAGTTCTCAGAGGCCAACGATCATGTTGGCTACGAAAACTATCGGC
ATGTGTGTCACAAGTGGCACTACAAGATTACCAAGGCGATTGTATTCTGT
CTGGACTCGAAGGACTTTATGCAGATCAGAAACGCACTGATCATCCTAAT
GCGAATACTGCCTCACTATCCAGTTCTTTCCAAACTGGCGCAAATCATCG
AGCGTAAGGTGGACAAGGTGCGCGAGGAGGAGAAGACAAAGCGACCGGAT
CTGTATGCCATTGCCTCCAGCTACATTGGACAACTAAAGCTGAAGACTCC
CCACATGCTAAAGGAGAGTGTCTTTCATCAAATCGCCGAGCGGCCGAATA
AGGAGTCGCCGACCAGTGTTGGCGCTCCCGCCGCAGCCACCAGATCCGAT
AAGTTGTCACCCACCTCTCCATCTGGGAATACACAAGGAACAAGGGCTCC
AGGCGGAGCTGCTCCTTTCTACAACAGCGAACAAAAGTCGGTGATCAAAG
AACCAGATGCAAAAGCAGCCTCCACAACGCGTGAATCGAAGAGCCAAAGA
GGCGAGGGCAATAATGTCACTTTGGTGTCCACAGCCACTTCAACGGCATC
CAATAACGAACGCGAGAGCAAACAACGTGACCTGCCAGCGCCACGTGAGT
CCCAATCCCGCAGCAAGGATGACCAGCAGGAGCAGGCAAACAACGGCAGT
AATGGCAGCCGACAGAGCGAGAGTCGTAATAGAGATGTGGAACGAGACCG
ACATGATCAGCAAGACCAACGAAGCATTAGTAGCCATCGCAGTTCCAGAG
ACATTGTGCGGGTCAAGGAGCGCACAGAAGCCGAGCTGCATCAGAGGTCG
CGGGAACGTTCTCAACGTCTGGAGGAGTTGGAAGCGCAGCAGCGGAAGCG
GGAAAAAACATCGCGACGGGGCGGCGAAGAGCGCATCCGACATGGTGATG
GCGTCGAGACAGTGGACCTGGTGGGCAGCACCGACAATCGCCACTACGAG
GAGTTCGAGGGGCGTATGAGGGACCTGAGCTCAGTGTCCAACGAGAGCAA
CGGTTCGTTGCACCATCGACAACGTAGCCATGAGACCATTGAATTTGAAA
AGGATTCAAAGCGTCGCAAATTGGAGTCATCAACCAGCAGTTCAAAGAAG
GTGGAAGAACTGGTGGACAGCGTAAAGAAGGCGCGCGCCCTTAAGACCAA
AGAGCGCAACAAGGACAAACTGTCGGATGAGGAGCGAGACGCTCGCAAGG
ATCGCAAGCTGGGACGCAAGCGGGATCGCGTCGACGAGTCCAACAGCAAC
GAACATAAACGCCGGCGCGAAGGACAAAACGGTGAAGAAGAGCTGCGGGA
TAGAGAGCGGCATAGGGAGAAGTCACCGCGGGAGCGATCACATGAAAAGT
TCGATAGAGAAAGAGGAGGAGCCAGCGGTTCGCGGGCCGAGGAGCGGCAG
TACATCAGCAAGTCCGCTCGGTCCTCCAGAGTCAACTATTGAAAGCTTTC
TAGACCAT
BS30155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tho2-RA | 4926 | CG31671-PA | 1..4926 | 17..4942 | 24630 | 100 | Plus |
| tho2-RB | 4929 | CG31671-PB | 1..4929 | 17..4942 | 24565 | 99.9 | Plus |
| tho2-RC | 4926 | CG31671-PC | 1..4926 | 17..4942 | 24485 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:22:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tho2-RA | 5401 | CG31671-RA | 157..5082 | 17..4942 | 24630 | 100 | Plus |
| tho2-RB | 5404 | CG31671-RB | 157..5085 | 17..4942 | 24565 | 99.9 | Plus |
| tho2-RC | 5401 | CG31671-RC | 157..5082 | 17..4942 | 24485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2142642..2143393 | 1945..1194 | 3760 | 100 | Minus |
| 2L | 23513712 | 2L | 2140380..2141071 | 3968..3277 | 3460 | 100 | Minus |
| 2L | 23513712 | 2L | 2141129..2141722 | 3277..2684 | 2970 | 100 | Minus |
| 2L | 23513712 | 2L | 2139728..2140314 | 4553..3967 | 2935 | 100 | Minus |
| 2L | 23513712 | 2L | 2143448..2143851 | 1196..793 | 2020 | 100 | Minus |
| 2L | 23513712 | 2L | 2142190..2142580 | 2336..1946 | 1955 | 100 | Minus |
| 2L | 23513712 | 2L | 2141785..2142134 | 2683..2334 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 2144115..2144367 | 664..412 | 1250 | 99.6 | Minus |
| 2L | 23513712 | 2L | 2144805..2145031 | 243..17 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 2137983..2138160 | 4773..4596 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 2144456..2144625 | 413..244 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 2143919..2144053 | 795..661 | 675 | 100 | Minus |
| 2L | 23513712 | 2L | 2137669..2137795 | 4942..4816 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 2137882..2137928 | 4817..4771 | 235 | 100 | Minus |
| 2L | 23513712 | 2L | 2139630..2139674 | 4597..4553 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:22:13 has no hits.
BS30155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:28 Download gff for
BS30155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 145..5069 | 17..4941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:06 Download gff for
BS30155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 157..5081 | 17..4941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:43 Download gff for
BS30155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tho2-RA | 157..5081 | 17..4941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:43 Download gff for
BS30155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2144119..2144366 | 413..660 | 100 | <- | Minus |
| 2L | 2144457..2144625 | 244..412 | 100 | <- | Minus |
| 2L | 2137670..2137794 | 4817..4941 | 100 | <- | Minus |
| 2L | 2137883..2137926 | 4773..4816 | 100 | <- | Minus |
| 2L | 2137984..2138158 | 4598..4772 | 100 | <- | Minus |
| 2L | 2139630..2139673 | 4554..4597 | 100 | <- | Minus |
| 2L | 2139728..2140312 | 3969..4553 | 100 | <- | Minus |
| 2L | 2140380..2141070 | 3278..3968 | 100 | <- | Minus |
| 2L | 2144805..2145031 | 17..243 | 100 | | Minus |
| 2L | 2141129..2141722 | 2684..3277 | 100 | <- | Minus |
| 2L | 2141785..2142132 | 2336..2683 | 100 | <- | Minus |
| 2L | 2142191..2142580 | 1946..2335 | 100 | <- | Minus |
| 2L | 2142642..2143391 | 1196..1945 | 100 | <- | Minus |
| 2L | 2143449..2143849 | 795..1195 | 100 | <- | Minus |
| 2L | 2143920..2144053 | 661..794 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:06 Download gff for
BS30155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2137670..2137794 | 4817..4941 | 100 | <- | Minus |
| arm_2L | 2137883..2137926 | 4773..4816 | 100 | <- | Minus |
| arm_2L | 2137984..2138158 | 4598..4772 | 100 | <- | Minus |
| arm_2L | 2139630..2139673 | 4554..4597 | 100 | <- | Minus |
| arm_2L | 2139728..2140312 | 3969..4553 | 100 | <- | Minus |
| arm_2L | 2140380..2141070 | 3278..3968 | 100 | <- | Minus |
| arm_2L | 2141129..2141722 | 2684..3277 | 100 | <- | Minus |
| arm_2L | 2141785..2142132 | 2336..2683 | 100 | <- | Minus |
| arm_2L | 2142191..2142580 | 1946..2335 | 100 | <- | Minus |
| arm_2L | 2142642..2143391 | 1196..1945 | 100 | <- | Minus |
| arm_2L | 2143449..2143849 | 795..1195 | 100 | <- | Minus |
| arm_2L | 2143920..2144053 | 661..794 | 100 | <- | Minus |
| arm_2L | 2144119..2144366 | 413..660 | 100 | <- | Minus |
| arm_2L | 2144457..2144625 | 244..412 | 100 | <- | Minus |
| arm_2L | 2144805..2145031 | 17..243 | 100 | | Minus |
BS30155.pep Sequence
Translation from 16 to 4941
> BS30155.pep
MQRSTDRLRRLKKLKSVTGAQDGVGGGDAAATADNRTSASSDTNGAAASS
GAGGNQPGTLNPEVFKHLDKSGRSEFLKYLKHQLQDAADTPVYDKNGVFK
QGISNAIYQLLWQTLRFTHKKDIVLHLLLEVVALHADFPSLIVDVVNILD
SETSLITDGLQEERHAFVQLVKDLDRVIPESLLKERLEIDTLQEAGIVKN
KSFYSKFIKVKTKLYYKQRRFNLFREESEGFAKLITELNQEFDENTTPES
IMDIIKSLIGCFNLDPNRVLDIIIESFETRPDRWNLFIPLLRSYMPTGAI
ICEVLGYKFCHFKDSRTPRSLYHVCALLLKHGVIALNDVYVWLTPNDGSI
KADWEEDLADAREMVRKLNLIQTNKKEDEKDPPPPPSVKKFNEEKYNANQ
KFGLCEALLKVGDWENAYKIIQKLPEQAVVLQEPIARAIADLIHLSVENI
YYKKCFKAPAGRRPSRNRLYEDSKLVAKMQAKEFGDLRKYTWPMANVLGP
AMHYDTVLMYKLIRIMRKLVVDMGVDSLNGPPPNSEAEQHYYDIMSSLDA
CILPSLLYLDNNCSMSEEIWAVLKYFPYHFRYSLYARWKNDSYQLHPNLI
RRCGLAQRDIKALMKRVSKENVKQLGRLVGKYSHCAPGLLFDYILLQIQI
YDNLIGPVCDLLKYLTALSFDCLGYCIIESLTLTGRLRFKDDGTSLSLWL
QSLASFCGTIYKKYSIELSGLLQYVANQLKSQKSLDLLILREIVHKMAGV
ESCEEMTNDQLQAMCGGEQLRGEAGYFSQVRNTKKSSNRLKEALANNDLA
VAICLLMAQQKHCVIYRETAAHSHLKLVGNLYDQCQDTLVQFGTFLGSTY
SVDEYVERLPSIITMLREYHINTDVAFFLARPMFTHQINQKYDQLRKDDP
NAKKLTTTQKLQKYLEATQLIMNPIVESVRPLHSSKVWEDISPQFLVTFW
SLSMYDLHVPNESYQREVAKLKQLAQQAAEGKDSNQSKNKKEQERYIALM
EKLNDERKKQHEHVDKISQRLQEQKDSWFLLRSGKSAKNDTITQFLQLCL
FPRCTFTALDALYCAKFVHTIHNLKTSNFSTLLCYDRIFCDITYSVTSCT
EGEATRYGRFLCAMLETVMRWHADQAVFNKECANYPGFVTKFRVSNQFSE
ANDHVGYENYRHVCHKWHYKITKAIVFCLDSKDFMQIRNALIILMRILPH
YPVLSKLAQIIERKVDKVREEEKTKRPDLYAIASSYIGQLKLKTPHMLKE
SVFHQIAERPNKESPTSVGAPAAATRSDKLSPTSPSGNTQGTRAPGGAAP
FYNSEQKSVIKEPDAKAASTTRESKSQRGEGNNVTLVSTATSTASNNERE
SKQRDLPAPRESQSRSKDDQQEQANNGSNGSRQSESRNRDVERDRHDQQD
QRSISSHRSSRDIVRVKERTEAELHQRSRERSQRLEELEAQQRKREKTSR
RGGEERIRHGDGVETVDLVGSTDNRHYEEFEGRMRDLSSVSNESNGSLHH
RQRSHETIEFEKDSKRRKLESSTSSSKKVEELVDSVKKARALKTKERNKD
KLSDEERDARKDRKLGRKRDRVDESNSNEHKRRREGQNGEEELRDRERHR
EKSPRERSHEKFDRERGGASGSRAEERQYISKSARSSRVNY*
BS30155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tho2-PA | 1641 | CG31671-PA | 1..1641 | 1..1641 | 8506 | 100 | Plus |
| tho2-PB | 1642 | CG31671-PB | 1..1642 | 1..1641 | 8494 | 99.9 | Plus |
| tho2-PC | 1641 | CG31671-PC | 1..1641 | 1..1641 | 8477 | 99.9 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 286..673 | 1216..1638 | 239 | 23.5 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 286..673 | 1216..1638 | 239 | 23.5 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 272..637 | 1311..1638 | 223 | 26.5 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 155..520 | 1311..1632 | 173 | 21.2 | Plus |
