BS30156.complete Sequence
4997 bp assembled on 2012-09-28
GenBank Submission: KX804790
> BS30156.complete
GAAGTTATCAGTCGACATGCTGAGCCGCAAGCGCCGGGCGAGCAGCATAT
CCAGCCGGCAGGACGAGGATCCGCTGCAGCTGGACGACTCGACGCCGGAG
CAGTCACCGGTGCAGCAGACGACGACACAATCGGCGCGAAAAAAGCGCCG
TCTCGATCCCACAGAACTGTGCCAGCAATTGTACGATTCCATAAGGAACA
TAAAGAAGGAGGACGGTTCAATGCTGTGCGACACCTTCATCCGCGTGCCG
AAGCGCCGGCAAGAGCCCTCGTACTATGACGTGGTGGTCAATCCCATTGA
TCTGCTCAAGGTTCAGCAGAAGCTGAAAACCGATTCCTACGACGATTTGG
ATGATCTGATGGCCGACCTGGAGCTGCTTATTGGCAATGCCAAGGCCTTC
TACATACCGGGCAGTAGCGAGCACCAGGACGCAGTCTCTCTGTGGCAGCA
CATTCATTCGCAGAGACAGCGCATTATGGAGGCAAATGGATTGGCGGAGG
AGGAGCCGCGTGCCAGACGCATGTCGCGCCAAGTGCGCCGAATGACCAGC
AGCACTGAACCTGGTGGCGATGGAGCAACTGATGACGAGTACAACCAGTA
CGAGGAGCTCTTCGCCTCCGTTATGACCGCTACCGATCCCGTGGGCGATC
GGTTAATGCACCGCATGTTCCAACTGCTGCCCTCCAAGAAAATCTATCCA
GACTACTACGATGTCATTGAGCATCCCATTGATCTGCGCCTGATTGCGAC
CAAAATACAAATGAACGCTTACTCCTCGCTGGCGGAGATGGAACGGGATC
TGCTACAAATGACCAAAAACGCATGTCTGTTCAACGAGCCTGGTTCTCAG
ATCTATAAGGACGCCAAATCCCTGAAACGGATCTTTACGCAGCGGCGTAT
TGAGCTGGAGATGGGCAAAGGCAAGCTGGCTAAGCGCGTCAAGAGTCTCT
CCAGTGCAGCAATTGCTGCACTAAAAGAGGAGGTTGACAGCTCGGACGAC
GAGGAGACCAGCAAAAAGGGCGAGGGGCCCATGTGGGCATTGTTCGATCA
CTTGTACAACGCACCAGGAACTTCGGAACATCCGGGAGTTACTGGTCCTC
CATTGGGAAACTCTCTATGGAAACTGCCAGTTCGTCGTTTCCATCCCGAA
TATTTTGAGCTGATCAAACGACCCATATCTATGAGCCAAATCCACACAAA
GCTCAAAAAGGGCGATTATGCGAACATTAGTGATCTCACCGCCGATCTAT
ATCTCATGCTGGACAACGCCAAAAAGGCGTTTCCGACGTCCCATCGCACT
CACAAGGATGCGCTGAAAATGTTAAAGCTAATGAATGCCAAGCTGGTGGA
GGAGTCTCTCGAGGAGGGCAGTGATCTGGATGACGAGGATGCAGAGGAAA
TGGACACAGAGGTATTTACGGTTAGCACGCAGCCGGAAAAGCGCAAGCCG
GGCAGACCCCGCATCAACTCCAATTCGAACTCTAACGCCTCCCATACACC
AAATAACTCGAATTCACCCAAATCAAATCGCATTGCCATCAACGCGGCTA
TTAAAAAGAAGATTCTGAGCATACAGAAATATTTGGTGGACTACTCCTTG
GGCAATCGTCGTCCCATCGAAATGTTTATGGAAAAGCCGCCTCGCAAGAT
TTATCCGGACTACTACGATATCATTCAAAACCCCATTGACATGAACACTA
TCGAGCATAACATTCGCACAGATCGCTATGCCGCCGTGGAGGACGTGGTA
TCCGACTATCGACTTATGTTTTCCAACTGCCGACAGTATAATGAGGAGGG
CTCTAACATATACGAGGATGCCAATATATTGGAACGAGCTCTAAATGAAA
AGCTCAAGGAGTTCCCTGGTCTTACAGAGGGCAAAAAAAGCCAGCAGAAG
TACAGCAAGGTGGGAAGAAAGTTAAAGACCGCTGTAATTACAGAGCGGCT
GTGGCAATTCTATGAAACAGTAAAGGAGTACCAGGAGCCCAAGGGTAAGA
GGCAGCTGTCGCTTATATTTACGAAGTTGCCATCCAAGAGCGAGTATCCG
GACTACTACGACATTATCAGGGAACCTATTGACATGGACCGAATCGCTCA
GAAACTTAAACAGGGCGCTTATGATACCTTAGATGACTTGGCAGCGGACT
TTCTGCTGATGCTGGAGAACGCCTGCAAGTATAACGAGCCAGACTCGCAG
ATCTACAAGGATGCGCTCGTGCTACAACAATTGACACTGCAGCTGAAGCA
ACAACTGCGCACCGAGCGCGATTCTCTTCCGGATGTTCCTTTGGCTGTTC
AGGAGCTGTTCCTCACACTGTTCACGACTATTTACAATCACCAGGACGAG
GAGGGACGTTGCTACTCGGATTCCCTGGCCGAACTGCCGGAGTACGATGA
GATTGGCGAAGGACCCAAGGTTCGCGGCATTTCGCTGGACCTTGTAAAAC
GAAGGCTTGACAAAGGAGCTTACAAACGGCTTGATGTTTACCAGGAAGAT
ATTTTTGCCTGTTTGGAACGTGCAAGAAAGTTGTCCCGCACAGATTCGGA
TATTTTTCAGGACTCCATCGAGTTGCAAACATACTTCATTCGCAAGAGAG
ACGAGTTATGCAAGGACACACTTAGCTCATCCGCTTTAAATTTTAGTCTA
GAACGCCTTATGGCTGATGTGGAGCTGTGTCGCCAGCAAAAAATGCAACA
AGAGGAACAGGACCAAGAGCAGGATAAGGAGAAGGATGAATTCAATGCAG
CCAAGGGTGAAAGCATGACAATAAACCAGCAGGTGTTTTCTCCCGGCGAT
TACGTATACGTGCAAATGCCGGAAAACAAGATTCCCTCGATATGCTGCAT
AGAGCGCCTCTGGACATCACCCACCAATGAGAAGCTGATGCAGGCTTCGA
TCTTTGTACGGCCCCACGAAACGTACCATGTAACCACTCGCAAGTTCCTC
GAAAAGGAAGTGTTCAAGAGCAGCCTTTCGCAGACCATCTCGATGGATAA
AGTGCAGGGCATGTGCTACGTAATGAACATAAAGGATTACATCAAGATGC
GTCCGGAAAACTTGCCTGAAAAGGATGTTTACGTTTGCGAGTCTCGTTAC
AATATCCAAGGTCGCTGGTTCAAGAAGCTGAAGAGCTGGCCGCCAGTCCG
TGAAGGCAGCTCGGTGAAGTTCGTTCCACGAGAGCAGCCATTGGAGTTAA
AACGTGTGATGTCTGTGTTTAAGGAGCGTTTGGAAAAGCACAAAGGAGAA
CTGGAGGAGCTGAAGCTCCAAGAGACGCTGGTCGAAAAGGAGAAACCAAA
TGTGTCTTGCGATCCGCCGCCAAATGCTGAGGTTGGCAGCACGTACTACC
AGCAGTACAACACCATTTGCAGTGGGGCCATAAAAACGGGAGACTTTGTT
TACGTGGCCACCCAAACAGGAAAGCAGTCGGTGGCACAGGTCCAGCAGAT
TTGGGAGCAGAATGGAAAATCATACTTTAAAGGTCCATGGCTGTTACCAC
CCAGCGAGACGACCCCCGGCTTGGGCAAGCAATTTTATCGCCAGGAACTG
CTGCTGAGCACAGTCGAAGAGGTCAGTCCGGTGGTGGGCATCGTGGGTCG
TTGCGCCGTCCTGGAGTACTCCGAATTTATCAGCTCCCGACCCACGGAGA
TATCCGAAAGCGATGTGTACATTTGTGAGTCCGTCTATGATGAGCTAAAG
AAAGCTCTTCGCAAGTTGGTTACGGGCAACATGCGCAAGTTCCAACACAG
TCCTTCTGTCACCGAGGATGAGATCTTTTACTTTAAGACTCCCATTAAGC
CCTCCAAGGACTTTAAGAACGAATTGAATGAACTGGGCATGCTAGAGGAT
TCAATGGATGGGGATACACCCTCGCTGAGCTCAGACATTGCGGCCATGTC
CTCGCCGGCTCCTTCAGTAAACTCCACGCCACTGACGTCCAAAGTTAAGG
CCGCCAAATCGGCCAAAAAATGTCTTACCGGTTACATTTTGTACTCTAGT
GAAGTTCGAAAAAGCATTTGCCAGAGCAACCCGGACGCAACCTTTGGAGA
CATATCCCGCATGGTGGGCACCGAATGGAAGAATCTGCCCTCCAGCGTTA
AGCAGAGCTGGGAGGATAGGGCTAGCCGACAGAATGAGGAGACGGCGGCC
CTACGGCGCGAGTTGGACGACGTCCAGAACAGTGCGAGTCCCTCATCCCA
AGTTTCGCAGGATGTCTTTGGACAGGTGCTCACCTTTGAGTGTCAGTGGG
ATAAGTGCGACTTTCAGTTCGAGGAGCTTAGCGACTGCACGGAACATTGC
ATGTCCGATAGCACCGGACACATCCAGCGCCATCCACAAGCGGGCGTGGA
GACGGAGTATGTCTGCCTGTGGCGCAACTGCCCGCGGGTCAAGAAGTCTG
TTCAGGCCTTTCCTAACGTTCTGCGCCTCATCAAGCATGTGCGCGAGGTC
CATCTGAGCAAGTGTGGCAAGACGATTTCGGCGGCAGACCGCAGCAAGAA
TTTCGTGCCGCGTCGGCAGAAGCATGCGCAACTGGCCACTACTGTGCCCA
TCCCGCCCAGCCTTGCGCAATCGCCGCGCGCTCCAAGCAATCTCGAGGCA
GTGCAGCTCCAGCAGCAGCAGCATCCGCAGCAGAACATGCACCAACTGCA
GCAACAGCAAACGATCGTCTTGGGTCCGCCACCAGAGCCGCTCTTCGTCA
CAGTGCCGCCGCGCACCACTCGCGTCATCCACTCGGAGGCCTACATTAAG
TACATCGAGAGCCTGCAGACGGGCAGCCATCTGAACGTGGTCACCTGCAA
CAACAATTGGCGGCGTGCACTGACCCACATCACACCCGCACAGGTGGTGG
CCAAGACGGCGCTACCCGAGAAGTGGATCGGACCGAATCTGCGCGACCAG
GGCAACGTGGTGCAGGCACTGTGCCACCTGCGCAACTTCATGGTCGACGA
TATACTTCAAATACGGCGCAGTTGCAACTAGAAGCTTTCTAGACCAT
BS30156.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polybromo-RA | 4965 | CG11375-PA | 1..4965 | 17..4981 | 24825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polybromo-RA | 5119 | CG11375-RA | 88..5052 | 17..4981 | 24825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24802570..24804163 | 2561..968 | 7970 | 100 | Minus |
| 3R | 32079331 | 3R | 24801059..24802520 | 4014..2553 | 7295 | 99.9 | Minus |
| 3R | 32079331 | 3R | 24800034..24801001 | 4981..4014 | 4840 | 100 | Minus |
| 3R | 32079331 | 3R | 24804221..24805172 | 968..17 | 4760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:22:19 has no hits.
BS30156.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:29 Download gff for
BS30156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 84..5048 | 17..4981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:09 Download gff for
BS30156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 88..5052 | 17..4981 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:46 Download gff for
BS30156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polybromo-RA | 88..5052 | 17..4981 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:46 Download gff for
BS30156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24800034..24801001 | 4014..4981 | 100 | <- | Minus |
| 3R | 24801060..24802512 | 2561..4013 | 100 | <- | Minus |
| 3R | 24802571..24804162 | 969..2560 | 100 | <- | Minus |
| 3R | 24804221..24805172 | 17..968 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:09 Download gff for
BS30156.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20625756..20626723 | 4014..4981 | 100 | <- | Minus |
| arm_3R | 20626782..20628234 | 2561..4013 | 100 | <- | Minus |
| arm_3R | 20628293..20629884 | 969..2560 | 100 | <- | Minus |
| arm_3R | 20629943..20630894 | 17..968 | 100 | | Minus |
BS30156.pep Sequence
Translation from 16 to 4980
> BS30156.pep
MLSRKRRASSISSRQDEDPLQLDDSTPEQSPVQQTTTQSARKKRRLDPTE
LCQQLYDSIRNIKKEDGSMLCDTFIRVPKRRQEPSYYDVVVNPIDLLKVQ
QKLKTDSYDDLDDLMADLELLIGNAKAFYIPGSSEHQDAVSLWQHIHSQR
QRIMEANGLAEEEPRARRMSRQVRRMTSSTEPGGDGATDDEYNQYEELFA
SVMTATDPVGDRLMHRMFQLLPSKKIYPDYYDVIEHPIDLRLIATKIQMN
AYSSLAEMERDLLQMTKNACLFNEPGSQIYKDAKSLKRIFTQRRIELEMG
KGKLAKRVKSLSSAAIAALKEEVDSSDDEETSKKGEGPMWALFDHLYNAP
GTSEHPGVTGPPLGNSLWKLPVRRFHPEYFELIKRPISMSQIHTKLKKGD
YANISDLTADLYLMLDNAKKAFPTSHRTHKDALKMLKLMNAKLVEESLEE
GSDLDDEDAEEMDTEVFTVSTQPEKRKPGRPRINSNSNSNASHTPNNSNS
PKSNRIAINAAIKKKILSIQKYLVDYSLGNRRPIEMFMEKPPRKIYPDYY
DIIQNPIDMNTIEHNIRTDRYAAVEDVVSDYRLMFSNCRQYNEEGSNIYE
DANILERALNEKLKEFPGLTEGKKSQQKYSKVGRKLKTAVITERLWQFYE
TVKEYQEPKGKRQLSLIFTKLPSKSEYPDYYDIIREPIDMDRIAQKLKQG
AYDTLDDLAADFLLMLENACKYNEPDSQIYKDALVLQQLTLQLKQQLRTE
RDSLPDVPLAVQELFLTLFTTIYNHQDEEGRCYSDSLAELPEYDEIGEGP
KVRGISLDLVKRRLDKGAYKRLDVYQEDIFACLERARKLSRTDSDIFQDS
IELQTYFIRKRDELCKDTLSSSALNFSLERLMADVELCRQQKMQQEEQDQ
EQDKEKDEFNAAKGESMTINQQVFSPGDYVYVQMPENKIPSICCIERLWT
SPTNEKLMQASIFVRPHETYHVTTRKFLEKEVFKSSLSQTISMDKVQGMC
YVMNIKDYIKMRPENLPEKDVYVCESRYNIQGRWFKKLKSWPPVREGSSV
KFVPREQPLELKRVMSVFKERLEKHKGELEELKLQETLVEKEKPNVSCDP
PPNAEVGSTYYQQYNTICSGAIKTGDFVYVATQTGKQSVAQVQQIWEQNG
KSYFKGPWLLPPSETTPGLGKQFYRQELLLSTVEEVSPVVGIVGRCAVLE
YSEFISSRPTEISESDVYICESVYDELKKALRKLVTGNMRKFQHSPSVTE
DEIFYFKTPIKPSKDFKNELNELGMLEDSMDGDTPSLSSDIAAMSSPAPS
VNSTPLTSKVKAAKSAKKCLTGYILYSSEVRKSICQSNPDATFGDISRMV
GTEWKNLPSSVKQSWEDRASRQNEETAALRRELDDVQNSASPSSQVSQDV
FGQVLTFECQWDKCDFQFEELSDCTEHCMSDSTGHIQRHPQAGVETEYVC
LWRNCPRVKKSVQAFPNVLRLIKHVREVHLSKCGKTISAADRSKNFVPRR
QKHAQLATTVPIPPSLAQSPRAPSNLEAVQLQQQQHPQQNMHQLQQQQTI
VLGPPPEPLFVTVPPRTTRVIHSEAYIKYIESLQTGSHLNVVTCNNNWRR
ALTHITPAQVVAKTALPEKWIGPNLRDQGNVVQALCHLRNFMVDDILQIR
RSCN*
BS30156.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polybromo-PA | 1654 | CG11375-PA | 1..1654 | 1..1654 | 8607 | 100 | Plus |
| brm-PD | 1634 | CG5942-PD | 1441..1532 | 662..753 | 186 | 39.1 | Plus |
| brm-PC | 1634 | CG5942-PC | 1441..1532 | 662..753 | 186 | 39.1 | Plus |
| brm-PB | 1638 | CG5942-PB | 1445..1536 | 662..753 | 186 | 39.1 | Plus |
| brm-PA | 1638 | CG5942-PA | 1445..1536 | 662..753 | 186 | 39.1 | Plus |
| brm-PD | 1634 | CG5942-PD | 1441..1564 | 212..337 | 175 | 28.9 | Plus |
| brm-PC | 1634 | CG5942-PC | 1441..1564 | 212..337 | 175 | 28.9 | Plus |
| brm-PB | 1638 | CG5942-PB | 1445..1568 | 212..337 | 175 | 28.9 | Plus |
| brm-PD | 1634 | CG5942-PD | 1372..1517 | 446..607 | 169 | 25.9 | Plus |
| brm-PC | 1634 | CG5942-PC | 1372..1517 | 446..607 | 169 | 25.9 | Plus |
| brm-PB | 1638 | CG5942-PB | 1376..1521 | 446..607 | 169 | 25.9 | Plus |
