BS30169.complete Sequence
2078 bp assembled on 2012-09-28
GenBank Submission: KX803899
> BS30169.complete
GAAGTTATCAGTCGACATGGACGACGAGTTTAAGCTGTGCTGGAAGAACT
TCCAGGACAACATAGCCAGCGGCTTCCAGAATTTGTACGACCGCGGCGAC
CTGGTGGACGTGACCCTCGCCTGCGATGGAAAGCTCCTCCATGCCCACAA
GATAGTGCTGGCTATCTGCAGCCCCTACTTCCAGGAGATATTCACTACCA
ATCCCTGCAAGCATCCCATCATAATACTCAAGGATGTGAGTTTCAACATT
ATGATGGAGCTACTGGAGTTTATGTACCAAGGAGTGGTTAATGTTAAGCA
CACGGAGTTGCAGTCGTTCATGAAAATTGGACAGCTGCTGCAGATCAAGG
GCTTGGCTACCAATTCGAATTCCTCGCCAGGATCGAGTGTCTCGGAGAAG
TCCTCTAGTCAGCCACCGGCAGAAGAATCAAGCAACACCAACAGCACCAA
TCATCACAACTCTAGCACTAATAGCAATAACAATAGCAAATCGGAAACGG
ATCACAATGAGTCCAAAGGCCAGAGCAATTCAAGAACCACTTCGCCAGGT
GGTGCCAGCAGAGCCTCCAACGATGCCAGCCACCTGTACACATCGAACAA
ACGTCCGATGCCGTCGGATTTTGGCAGCGATTCCCTGTCCATTTACTCCG
GCAAGCAGTTGAGACGCTCCCTCAAGGATCACGGTTCCGGCGGAAGCGAA
GGCGGCGGAGGCGATCACGCGGATACCGCAGCCGGATTGGACAACAGCAT
GAATTCAGAGGAGTTCTTCTTGCCACCCATTCCACAAATCACGATGGGAG
AACAGCGCTACGATCTCGGAGGTCTGAAACGGGAATCGGATGGTCACCAC
CACGGTCCCTTGTCGGCTGGCGGAGGAAATTCGGGCAGCGTTGGCAGCCT
CACCTCCTCGGCCTCACCGTCTGCACCCATCCGTAATCCCTTTGCCCCGA
ACTTCATGGACAGCTTCAACTACTACAAGGGCGGCAACAGCAGTGGTCCC
AGCGGTAGTTCCAATAACTCGGTTGGCCCAGGTGGCGTCAATAACAATGG
CTCCGTGGGCCTTGGCTCCGGCGCCGAGTACCCCAACGAACTGTATATGC
CCAACGATTACTCCAAGAGCTTTGCCAACCACATGGACATTCCCTCAAGC
GGCAGCAACATGGTGATGCTGTCCACCACCTCTCTGCTCCACGGCAACTG
CGTGTTCAACCGGAACAACACGGTGGCCACGCAGCAGGGCATGAAGACCT
ACTGGCTGTGCAAGTCGTACCGGATCAGCATGTGCCGGGCGCGGTGCATC
ACCCACTTGGGCAGGATCATATCCGCCACGGGCGTCCACAATCATACGCC
GCACATGCGCGGTGGTCAGGGATCTTCGGCGCCCTCCACAGCGTCAGTTT
CCGGAAATCCAGCCCCGACGCCCATTTCCAGCCAAGCGGGTTACTCTCTG
ACGGATGGAGGTGGCCATTTGGGTCCGGATTTGCAGCATGGCAATCGAGT
GACCAACATGTTTGCCAATCAAACGCCGCCACCGCCGCCGCCACCACCGC
CACTACCAGTGGCATCAACGCCGCACCACCCGCATCATCACCATCACTTG
GGACAACCGTTGCCCAATCTTTTGGTGCAGCACCATCCGGCGCCATCGCA
CATGGAGCAGCATGGCAGCTCGGCGAGCCTCTTGCATAATCCAAATCTGA
TGCACCTGCAGACCCCGACGCACCACCACCAACAACAACACCACCAGCAG
CATTCGCCACACAATCCACCGCCTCCGCAGCAGCACAATCTGGAGCTGGG
AGGTGGCTCGGGATCGGGAGCAGTGCTTCTCTCGCCGGCGCATCTTCAGC
AAAGTCCGCAATCGAATCGGAGCAGTCATTCCCTCCAGGCGCAGAGTCCA
CCTCCACAGTCAGTGGAGGAACAGCAGCCACACCAGCAGCAGCAGCAGCA
GCAAGAAGGAGCCACCACTGAGGTTACCACGGATCCCAGCACGGCTCACG
TGATCAACTCCATCACCATATCCCCGAACACCAGGCACACCTTCAAGATG
GAGAACATGTAAAAGCTTTCTAGACCAT
BS30169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:22:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34376-RA | 2046 | CG34376-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| CG34376-RB | 1791 | CG34376-PB | 1..1132 | 17..1148 | 5660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34376-RA | 2550 | CG34376-RA | 318..2363 | 17..2062 | 10230 | 100 | Plus |
| CG34376-RB | 2357 | CG34376-RB | 318..1449 | 17..1148 | 5660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22456551..22457478 | 222..1149 | 4640 | 100 | Plus |
| 3R | 32079331 | 3R | 22458321..22459234 | 1149..2062 | 4570 | 100 | Plus |
| 3R | 32079331 | 3R | 22448416..22448620 | 17..221 | 1025 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2672 | 1627..1973 | 186 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2403 | 1692..1796 | 172 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2626 | 1702..1956 | 165 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2764..2988 | 1543..1769 | 157 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2550 | 1721..1964 | 140 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1586 | 1707..1798 | 125 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2880 | 1684..1796 | 123 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1587 | 1705..1778 | 119 | 68 | Plus |
BS30169.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:30 Download gff for
BS30169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 377..2420 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:11 Download gff for
BS30169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 318..2361 | 17..2060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:48 Download gff for
BS30169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 318..2361 | 17..2060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:48 Download gff for
BS30169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22448416..22448620 | 17..221 | 100 | -> | Plus |
| 3R | 22456551..22457477 | 222..1148 | 100 | -> | Plus |
| 3R | 22458321..22459232 | 1149..2060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:11 Download gff for
BS30169.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18284043..18284954 | 1149..2060 | 100 | | Plus |
| arm_3R | 18274138..18274342 | 17..221 | 100 | -> | Plus |
| arm_3R | 18282273..18283199 | 222..1148 | 100 | -> | Plus |
BS30169.pep Sequence
Translation from 16 to 2061
> BS30169.pep
MDDEFKLCWKNFQDNIASGFQNLYDRGDLVDVTLACDGKLLHAHKIVLAI
CSPYFQEIFTTNPCKHPIIILKDVSFNIMMELLEFMYQGVVNVKHTELQS
FMKIGQLLQIKGLATNSNSSPGSSVSEKSSSQPPAEESSNTNSTNHHNSS
TNSNNNSKSETDHNESKGQSNSRTTSPGGASRASNDASHLYTSNKRPMPS
DFGSDSLSIYSGKQLRRSLKDHGSGGSEGGGGDHADTAAGLDNSMNSEEF
FLPPIPQITMGEQRYDLGGLKRESDGHHHGPLSAGGGNSGSVGSLTSSAS
PSAPIRNPFAPNFMDSFNYYKGGNSSGPSGSSNNSVGPGGVNNNGSVGLG
SGAEYPNELYMPNDYSKSFANHMDIPSSGSNMVMLSTTSLLHGNCVFNRN
NTVATQQGMKTYWLCKSYRISMCRARCITHLGRIISATGVHNHTPHMRGG
QGSSAPSTASVSGNPAPTPISSQAGYSLTDGGGHLGPDLQHGNRVTNMFA
NQTPPPPPPPPPLPVASTPHHPHHHHHLGQPLPNLLVQHHPAPSHMEQHG
SSASLLHNPNLMHLQTPTHHHQQQHHQQHSPHNPPPPQQHNLELGGGSGS
GAVLLSPAHLQQSPQSNRSSHSLQAQSPPPQSVEEQQPHQQQQQQQEGAT
TEVTTDPSTAHVINSITISPNTRHTFKMENM*
BS30169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34376-PA | 681 | CG34376-PA | 1..681 | 1..681 | 3672 | 100 | Plus |
| CG34376-PB | 596 | CG34376-PB | 1..452 | 1..444 | 2026 | 87.5 | Plus |
| ab-PF | 894 | CG43860-PF | 78..277 | 5..208 | 395 | 40 | Plus |
| ab-PD | 894 | CG43860-PD | 78..277 | 5..208 | 395 | 40 | Plus |
| ab-PB | 894 | CG43860-PB | 78..277 | 5..208 | 395 | 40 | Plus |
