BS30174.complete Sequence
1097 bp assembled on 2012-08-22
GenBank Submission: KX804799
> BS30174.complete
GAAGTTATCAGTCGACATGAGCCAGCACACTTCGCAGTACGTTTTCAACT
CCAAGGAAGACTACAACGTAATCCTAGACAACATGAGTCGCGAGTTCGAA
GAGCGGTGGAATCACCAGACCCAGTCGCCCTACACCAATCTGGAAAACTA
TATAACCCGGGCCGTCCTCGGCAACGGAAGTTTCGGCACTGTGATGCTGG
TCAGGGAGAAGAGTGGCAAGAACTACTATGCCGCCAAGATGATGAGCAAG
GAGGATCTGGTGCGGCTGAAGCAGGTGGCCCACGTACACAACGAGAAGCA
CGTCCTGAACGCCGCCCGATTCCCGTTCCTCATCTACCTGGTGGACTCGA
CCAAGTGCTTCGACTATCTCTACCTAATCCTCCCGCTGGTCAATGGAGGA
GAGCTGTTCAGTTACCATCGCAGAGTTCGCAAGTTCAACGAGAAGCACGC
CAGATTCTATGCCGCCCAGGTGGCACTTGCTCTTGAGTATATGCACAAGA
TGCACCTCATGTACCGTGATCTGAAGCCGGAGAACATTCTGCTCGATCAG
CGCGGCTATATCAAAATAACGGACTTCGGTTTCACTAAGCGTGTGGATGG
CCGCACATCAACGCTGTGTGGAACCCCGGAATACTTGGCCCCGGAGATTG
TTCAACTCCGGCCCTACAACAAATCGGTGGACTGGTGGGCCTTTGGTATC
CTAGTGTACGAGTTTGTGGCAGGGCGGTCTCCCTTTGCCATTCACAATCG
AGATGTAATCCTGATGTACTCCAAGATCTGCATATGCGACTACAAGATGC
CCTCATACTTTACGTCCCAGCTGAGGAGCCTTGTCGAGAGCCTTATGCAG
GTGGACACCTCAAAGCGTTTAGGAAACTCGAACGACGGCTCCAGCGACGT
GAAGAGTCATCCGTGGTTCCAGGGCGTAGATTGGTTTGGCATTCTCAACC
AGGAAGTCACCGCCCCCTACCAGCCCACCATTTCCGGCGCCGAAGATCTG
TCGAACTTCGAGAACTTCGAGTTCAAGGATCGGTACAAGTCCCGAATAAA
CCGCCATCCCGAATTGTTTGCGAATTTTTAAAAGCTTTCTAGACCAT
BS30174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C2-RB | 1065 | CG12066-PB | 1..1065 | 17..1081 | 5310 | 99.9 | Plus |
| Pka-C2-RC | 1062 | CG12066-PC | 1..1062 | 17..1081 | 5230 | 99.6 | Plus |
| Pka-C1-RD | 1062 | CG4379-PD | 472..635 | 485..648 | 235 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C2-RB | 1349 | CG12066-RB | 171..1236 | 17..1082 | 5315 | 99.9 | Plus |
| Pka-C2-RC | 1346 | CG12066-RC | 171..1233 | 17..1082 | 5235 | 99.6 | Plus |
| Pka-C1-RD | 4480 | CG4379-RD | 1735..1898 | 485..648 | 235 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30695927..30696206 | 867..588 | 1385 | 99.6 | Minus |
| 3R | 32079331 | 3R | 30696505..30696735 | 423..193 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 30695650..30695865 | 1082..867 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 30696792..30696968 | 193..17 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 30696259..30696426 | 589..422 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 9696932..9697095 | 648..485 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:28:57 has no hits.
BS30174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:33 Download gff for
BS30174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1233 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:53 Download gff for
BS30174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1233 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:12 Download gff for
BS30174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-C2-RB | 171..1233 | 17..1079 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:12 Download gff for
BS30174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30695927..30696204 | 590..867 | 99 | <- | Minus |
| 3R | 30696259..30696424 | 424..589 | 100 | <- | Minus |
| 3R | 30696505..30696734 | 194..423 | 100 | <- | Minus |
| 3R | 30696792..30696968 | 17..193 | 100 | | Minus |
| 3R | 30695653..30695864 | 868..1079 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:53 Download gff for
BS30174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26521375..26521586 | 868..1079 | 100 | <- | Minus |
| arm_3R | 26521649..26521926 | 590..867 | 99 | <- | Minus |
| arm_3R | 26521981..26522146 | 424..589 | 100 | <- | Minus |
| arm_3R | 26522227..26522456 | 194..423 | 100 | <- | Minus |
| arm_3R | 26522514..26522690 | 17..193 | 100 | | Minus |
BS30174.pep Sequence
Translation from 16 to 1080
> BS30174.pep
MSQHTSQYVFNSKEDYNVILDNMSREFEERWNHQTQSPYTNLENYITRAV
LGNGSFGTVMLVREKSGKNYYAAKMMSKEDLVRLKQVAHVHNEKHVLNAA
RFPFLIYLVDSTKCFDYLYLILPLVNGGELFSYHRRVRKFNEKHARFYAA
QVALALEYMHKMHLMYRDLKPENILLDQRGYIKITDFGFTKRVDGRTSTL
CGTPEYLAPEIVQLRPYNKSVDWWAFGILVYEFVAGRSPFAIHNRDVILM
YSKICICDYKMPSYFTSQLRSLVESLMQVDTSKRLGNSNDGSSDVKSHPW
FQGVDWFGILNQEVTAPYQPTISGAEDLSNFENFEFKDRYKSRINRHPEL
FANF*
BS30174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-C2-PB | 354 | CG12066-PB | 1..354 | 1..354 | 1885 | 100 | Plus |
| Pka-C2-PC | 353 | CG12066-PC | 1..353 | 1..354 | 1869 | 99.7 | Plus |
| CG12069-PC | 356 | CG12069-PC | 8..356 | 6..354 | 1107 | 58.2 | Plus |
| CG12069-PA | 356 | CG12069-PA | 8..356 | 6..354 | 1107 | 58.2 | Plus |
| Pka-C1-PD | 353 | CG4379-PD | 7..353 | 5..354 | 825 | 46 | Plus |
