BS30176.complete Sequence
1142 bp assembled on 2012-08-22
GenBank Submission: KX806462
> BS30176.complete
GAAGTTATCAGTCGACATGCGAGTCCGAGCCACAGATCCGCGTCCCTGCC
CCAAGTGCGGAAAAATCTACCGCTCCGCCCACACGCTACGCACCCATCTG
GAGGACAAGCACACCGTGTGCCCCGGCTATCGATGTGTGCTCTGCGGCAC
GGTGGCCAAGTCCCGCAACTCTTTGCACTCGCATATGTCGCGCCAACATC
GCGGCATCTCCACCAAGGACCTGCCCGTCCTGCCCATGCCCAGTGCTTTC
GATCCAGAGCTCGCCTCGCGCCTTCTGGCCAAGGCGGGCGTCAAGATCTC
ACCCGCTGAGCTGAGGGCCAGAGCCTCGCCCACCGGCGGAAGTGGCAGCA
GCGGCGGAGGCGGCGGAGGTGGTAGCAGCCAGGCCAAGTTGGATTTAAGC
AACGCTAGCGGTGGACCCATGGACGATGCCGAGGACTCGGACGACGATCC
CGAGGACCTGACCACGGGCAACGGATTGTATGGAATGGGCGGAAGCAGCA
GCGACCTGAGCCGTTACCACGAGAGCCTGTTGAGCAACTTCGGTCACGCC
AGGATGCGAAATGAGGCGGCTGCCGTGGCGGCCACTGCAGCTGCTCTTGG
TCAACCCAAGGACTTGGGCGTTCAGCTGCCAAACAGCAACGCGCCTGGGC
AATCCCTGCTGGACACCTATCTGCAGTTCATCACGGAGAATACATTCGGC
ATGGGCATGTCCCAGGAGCAGGCCGCTGCAGCAGCACTGCGCGCCAAGAT
GGCCCAGCTTAACGCGATGGGACACAGTCTGGACAACCTGCCGCCGGGCC
TTCTTCCCGGACAATTCGACCTGAGCAAGCTGGCCGCCGGAAATCCCGCC
TTTGGACAGAGCGGACCCGGACTAACCATTGAGCCGATAATGCGACACGA
ACAGGCAGCGGGAAACCTCTCGCCGAACCGACCACTGGCTCTCAACTCGG
GCGGCAGGATGATGGGTCACGATGAAATGGCGGAAAATGATGGCGACATG
CGGCGGGAAGGTTCGGAACCCATGGATCTGGGCCTGGACAACAACCAGTC
GGGCAGCAACCATGAGGTGGCCAACTCCGATGCCGAGGAGAACTACTCGG
AGGATGAGGGAGTGCACAACACATAGAAGCTTTCTAGACCAT
BS30176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ab-RF | 2685 | CG43860-PF | 1576..2685 | 17..1126 | 5550 | 100 | Plus |
| ab-RD | 2685 | CG43860-PD | 1576..2685 | 17..1126 | 5550 | 100 | Plus |
| ab-RA | 2715 | CG43860-PA | 1606..2715 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ab-RF | 4490 | CG43860-RF | 1983..3092 | 17..1126 | 5550 | 100 | Plus |
| ab-RD | 4888 | CG43860-RD | 2381..3490 | 17..1126 | 5550 | 100 | Plus |
| ab-RA | 5164 | CG43860-RA | 2385..3494 | 17..1126 | 5550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11258235..11258917 | 17..699 | 3415 | 100 | Plus |
| 2L | 23513712 | 2L | 11258982..11259410 | 698..1126 | 2145 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:30:10 has no hits.
BS30176.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:36 Download gff for
BS30176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RC | 211..1320 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:02 Download gff for
BS30176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2385..3494 | 17..1126 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:34 Download gff for
BS30176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ab-RA | 2385..3494 | 17..1126 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:34 Download gff for
BS30176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11258235..11258916 | 17..698 | 100 | -> | Plus |
| 2L | 11258983..11259410 | 699..1126 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:02 Download gff for
BS30176.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11258235..11258916 | 17..698 | 100 | -> | Plus |
| arm_2L | 11258983..11259410 | 699..1126 | 100 | | Plus |
BS30176.pep Sequence
Translation from 16 to 1125
> BS30176.pep
MRVRATDPRPCPKCGKIYRSAHTLRTHLEDKHTVCPGYRCVLCGTVAKSR
NSLHSHMSRQHRGISTKDLPVLPMPSAFDPELASRLLAKAGVKISPAELR
ARASPTGGSGSSGGGGGGGSSQAKLDLSNASGGPMDDAEDSDDDPEDLTT
GNGLYGMGGSSSDLSRYHESLLSNFGHARMRNEAAAVAATAAALGQPKDL
GVQLPNSNAPGQSLLDTYLQFITENTFGMGMSQEQAAAAALRAKMAQLNA
MGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSGPGLTIEPIMRHEQAAGN
LSPNRPLALNSGGRMMGHDEMAENDGDMRREGSEPMDLGLDNNQSGSNHE
VANSDAEENYSEDEGVHNT*
BS30176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ab-PF | 894 | CG43860-PF | 526..894 | 1..369 | 1929 | 100 | Plus |
| ab-PD | 894 | CG43860-PD | 526..894 | 1..369 | 1929 | 100 | Plus |
| ab-PB | 894 | CG43860-PB | 526..894 | 1..369 | 1929 | 100 | Plus |
| ab-PA | 904 | CG43860-PA | 536..904 | 1..369 | 1929 | 100 | Plus |
