BS30177.complete Sequence
1256 bp assembled on 2012-08-22
GenBank Submission: KX804659
> BS30177.complete
GAAGTTATCAGTCGACATGTTACCCAATTGGCTTACCGAAGAATATTTAC
AGCCGAAATTGAGGGCTTACTACAAGGATGATCAGCTGAAGGTCGTGAAA
GTCTGGGCAAAGCCAGCAACCGAAAAAGGTCAAAACTACATGAGCCTTAT
GACCCGTATCCACGTGGAGATTCAGCAGGGCGATGGATTATTGCAAAATA
GAACCTACATTATCAAGGAATCCCTATCAGAAGATTGTCCCCAGGCGAAG
GTATTTTTGGAGTATGATGTGTATAACCGGGAAATGGATATGTACGAGTT
TATCCTGCCGAAAATGAATGAACTTCTTCAAGAAGTTGGCCTTACTGGAA
AGTTCACTGCAGATACGATTTTCGTAGACCGGGAATACAGAACCATAATA
TTGGAAGATCTGGCGCAGTATAACTACGTGAATGCGGATCGGGTGAAGCA
GCTGGATCTGGCTCATACGAAATTGACTTTGGAAGTGTTGGCAAAGTTCC
ATGCAGCATCCATTGTCGTGAAACAGCGCCATCCCGAACTCCTGACCAAG
AGCCTTTTTATTCACTGTTTTTCGCGAGACAATAAAGGTTACACGGAGGT
GTACGAAGGTGTTTTATCGGCTTTTATAAGGTTCATAAATGAACAACCAG
TTTTAAAGAAAAAGTACGGTAATAAATTACAAAAAATACATGAAAATATC
ATGGATTATGGAGCCAGGACCTTTGAGGTCGGAGAACAAGAACTGCTGAC
CTTAAGTCATGGTGATTGCTGGACCACCAACTTTTTGTATCAGTATGATG
ATGCGAGCAATCCCCAATCAGCCGTAGCCATAGACTTTCAATTCAGCAAC
TTCACCTCCCCTGTCAACGACTTGCATCAATTCTTCACCGTTTCACTGCG
AGATGAAGTTCAGGACATGGAATCCGTTCTTGTTGAGAAATACTACAGCG
ACCTCAAAACGAACGTGGATACTCTGTCCTATAAGGGAATATTTCCTAGT
CTCCAGGGGTTCCAGAAACAGTTCGAAAGTCGTCGATTCATGTGTCTGTT
AGCCCATCTCTTCAAGCCCGTTATAATATACGACGGCACTGAAGTGAGCT
CAGACTTCTCAAGTGTCTATAAAGATACCGAAGAGGGCATTCGATTCCAG
AAAGCTATCTATGCCAACGAAAGGGTGTTGAAAAGTGCAACAAAATTATT
AGCTATGCTTGATGCCAAGGGTGTTTTGAATCTTCAGTAGAAGCTTTCTA
GACCAT
BS30177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16898-RA | 1224 | CG16898-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
| CG33301-RB | 1224 | CG33301-PB | 1..921 | 17..937 | 480 | 70.1 | Plus |
| CG33301-RA | 1224 | CG33301-PA | 1..921 | 17..937 | 480 | 70.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16898-RA | 1325 | CG16898-RA | 31..1255 | 17..1241 | 6125 | 100 | Plus |
| CG33301-RB | 1563 | CG33301-RB | 37..957 | 17..937 | 480 | 70.1 | Plus |
| CG33301-RA | 1318 | CG33301-RA | 37..957 | 17..937 | 480 | 70.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20003945..20004973 | 1045..17 | 5145 | 100 | Minus |
| 2R | 25286936 | 2R | 20003690..20003887 | 1241..1044 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 10049616..10050536 | 17..937 | 480 | 70.1 | Plus |
Blast to na_te.dros performed 2014-11-28 12:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 4927..4984 | 681..736 | 114 | 69 | Plus |
BS30177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:36 Download gff for
BS30177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 20..1238 | 22..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:06 Download gff for
BS30177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 20..1238 | 22..1240 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:38 Download gff for
BS30177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16898-RA | 36..1254 | 22..1240 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:38 Download gff for
BS30177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20003691..20003887 | 1044..1240 | 100 | <- | Minus |
| 2R | 20003947..20004968 | 22..1043 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:06 Download gff for
BS30177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15891196..15891392 | 1044..1240 | 100 | <- | Minus |
| arm_2R | 15891452..15892473 | 22..1043 | 100 | | Minus |
BS30177.pep Sequence
Translation from 16 to 1239
> BS30177.pep
MLPNWLTEEYLQPKLRAYYKDDQLKVVKVWAKPATEKGQNYMSLMTRIHV
EIQQGDGLLQNRTYIIKESLSEDCPQAKVFLEYDVYNREMDMYEFILPKM
NELLQEVGLTGKFTADTIFVDREYRTIILEDLAQYNYVNADRVKQLDLAH
TKLTLEVLAKFHAASIVVKQRHPELLTKSLFIHCFSRDNKGYTEVYEGVL
SAFIRFINEQPVLKKKYGNKLQKIHENIMDYGARTFEVGEQELLTLSHGD
CWTTNFLYQYDDASNPQSAVAIDFQFSNFTSPVNDLHQFFTVSLRDEVQD
MESVLVEKYYSDLKTNVDTLSYKGIFPSLQGFQKQFESRRFMCLLAHLFK
PVIIYDGTEVSSDFSSVYKDTEEGIRFQKAIYANERVLKSATKLLAMLDA
KGVLNLQ*
BS30177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16898-PA | 407 | CG16898-PA | 1..407 | 1..407 | 2107 | 100 | Plus |
| CG33301-PB | 407 | CG33301-PB | 1..407 | 1..407 | 1415 | 63.9 | Plus |
| CG33301-PA | 407 | CG33301-PA | 1..407 | 1..407 | 1415 | 63.9 | Plus |
| CG11889-PB | 417 | CG11889-PB | 10..415 | 3..405 | 764 | 40 | Plus |
| CG11889-PA | 417 | CG11889-PA | 10..415 | 3..405 | 764 | 40 | Plus |
