BS30178.complete Sequence
1295 bp assembled on 2012-08-22
GenBank Submission: KX802594
> BS30178.complete
GAAGTTATCAGTCGACATGAATAACCTGAACGCGAATGCCAGTGCCTTTT
TGTGGCAGGTACCGCCGCCGCAGCAGTTGACCCCTCAATCGGTGCAGCAG
CAGACGGTGCAGTCGGTGCAGTCCATGCAGTCCGTGCAACATAGCCAGCT
GCTTCAATCCGCTGTAGTCTCGCAGCCGCGCAAGTTTGGTGGCAACAAGA
GCAACTATAACTACATGCAGAATCATGCCATTATGGGTCCGGGCGGCGGT
CCAATGGGTGGGATCGGTGGCAACCCTAACATCTACCGAAAGCGCCATTC
TATCAACACCTACAATGCTGGCTTATATCAAACCAATGGTAAGTCGCTGT
TTTCTATACCCGAAAATGTTGTTATGCTTGAGAGCCAACCACCGCTATTG
GGACCCGGAGCCGCTTTCCCACCATTCGGAGCTCCCGAATATCACACCAC
CACACCGGAGAACTGGAAGGGGGCCGCCATCCATCCCACTGGCCTGATGA
AGGAGCCCGCTGGTGTTGTGCCCGGACGCAATGCTCCGGTGGCCTTCACA
CCGCAAGGACAGGCTCAGGGCGCCGTCATGATGGTCTACGGCCTGGACCA
CGACACTTCCAACACGGATAAGCTCTTCAATTTGGTTTGCCTGTACGGCA
ACGTGGCACGGATCAAGTTCTTGAAGACCAAAGAGGGCACCGCCATGGTG
CAAATGGGAGACGCTGTGGCCGTTGAGCGTTGCGTGCAGCACTTGAACAA
CATTCCCGTGGGCACTGGTGGCAAGATACAGATCGCTTTCTCCAAACAGA
ACTTCCTATCCGAGGTGATCAACCCGTTCTTGCTGCCCGATCATTCGCCC
AGCTTCAAGGAGTACACCGGCTCCAAGAACAATCGTTTCCTATCGCCGGC
CCAGGCGAGCAAGAATCGCATTCAACCACCGAGCAAGATTTTGCACTTTT
TCAACACACCGCCCGGCTTGACCGAGGACCAACTGATTGGAATCTTTAAC
ATCAAGGATGTGCCCGCCACATCGGTGCGCCTGTTCCCCTTGAAGACCGA
GCGCTCGTCGTCGGGACTGATCGAATTTTCCAATATCTCGCAGGCAGTGC
TGGCTATCATGAAGTGCAACCATCTGCCTATTGAGGGTAAAGGCACCAAG
TTCCCATTCATCATGAAGCTGTGCTTTTCCTCATCCAAGAGCATGAACGG
CGCCTGGAACAATGCGGCCAGCGAGGGCATGATCGAGAAGGAGAACGAGG
TGGATACCAAGGTGGACATCTACAATTGAAAGCTTTCTAGACCAT
BS30178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RI | 1263 | CG9218-PI | 1..1263 | 17..1279 | 6300 | 99.9 | Plus |
| sm-RAA | 1527 | CG9218-PAA | 586..1527 | 338..1279 | 4710 | 100 | Plus |
| sm-RZ | 1476 | CG9218-PZ | 535..1476 | 338..1279 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-RI | 1831 | CG9218-RI | 301..1564 | 16..1279 | 6305 | 99.9 | Plus |
| sm-RAA | 15139 | CG9218-RA | 1498..2439 | 338..1279 | 4710 | 100 | Plus |
| sm-RZ | 2378 | CG9218-RZ | 1170..2111 | 338..1279 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19546444..19546771 | 343..16 | 1625 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19532436..19532712 | 937..661 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 19532169..19532376 | 1143..936 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 19538029..19538211 | 569..387 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 19530564..19530702 | 1279..1141 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 19537776..19537872 | 661..565 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 19546012..19546060 | 386..338 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:30:52 has no hits.
BS30178.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:38 Download gff for
BS30178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 285..1546 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:08 Download gff for
BS30178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 302..1563 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:48 Download gff for
BS30178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sm-RI | 302..1563 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:48 Download gff for
BS30178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19546012..19546059 | 339..386 | 100 | <- | Minus |
| 2R | 19530565..19530700 | 1143..1278 | 100 | <- | Minus |
| 2R | 19532170..19532374 | 938..1142 | 100 | <- | Minus |
| 2R | 19532436..19532711 | 662..937 | 100 | <- | Minus |
| 2R | 19537776..19537868 | 569..661 | 100 | <- | Minus |
| 2R | 19538030..19538211 | 387..568 | 100 | <- | Minus |
| 2R | 19546449..19546770 | 17..338 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:08 Download gff for
BS30178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15425281..15425373 | 569..661 | 100 | <- | Minus |
| arm_2R | 15433954..15434275 | 17..338 | 99 | | Minus |
| arm_2R | 15425535..15425716 | 387..568 | 100 | <- | Minus |
| arm_2R | 15433517..15433564 | 339..386 | 100 | <- | Minus |
| arm_2R | 15418070..15418205 | 1143..1278 | 100 | <- | Minus |
| arm_2R | 15419675..15419879 | 938..1142 | 100 | <- | Minus |
| arm_2R | 15419941..15420216 | 662..937 | 100 | <- | Minus |
BS30178.pep Sequence
Translation from 16 to 1278
> BS30178.pep
MNNLNANASAFLWQVPPPQQLTPQSVQQQTVQSVQSMQSVQHSQLLQSAV
VSQPRKFGGNKSNYNYMQNHAIMGPGGGPMGGIGGNPNIYRKRHSINTYN
AGLYQTNGKSLFSIPENVVMLESQPPLLGPGAAFPPFGAPEYHTTTPENW
KGAAIHPTGLMKEPAGVVPGRNAPVAFTPQGQAQGAVMMVYGLDHDTSNT
DKLFNLVCLYGNVARIKFLKTKEGTAMVQMGDAVAVERCVQHLNNIPVGT
GGKIQIAFSKQNFLSEVINPFLLPDHSPSFKEYTGSKNNRFLSPAQASKN
RIQPPSKILHFFNTPPGLTEDQLIGIFNIKDVPATSVRLFPLKTERSSSG
LIEFSNISQAVLAIMKCNHLPIEGKGTKFPFIMKLCFSSSKSMNGAWNNA
ASEGMIEKENEVDTKVDIYN*
BS30178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sm-PI | 420 | CG9218-PI | 1..420 | 1..420 | 2211 | 100 | Plus |
| sm-PB | 404 | CG9218-PB | 1..404 | 1..420 | 2104 | 96 | Plus |
| sm-PZ | 491 | CG9218-PZ | 177..491 | 106..420 | 1643 | 99.4 | Plus |
| sm-PAA | 508 | CG9218-PAA | 196..508 | 108..420 | 1642 | 100 | Plus |
| sm-PU | 515 | CG9218-PU | 200..515 | 105..420 | 1638 | 99.1 | Plus |
