BS30179.complete Sequence
1385 bp assembled on 2012-08-22
GenBank Submission: KX805173
> BS30179.complete
GAAGTTATCAGTCGACATGCGTGAATGTATCTCTATCCATGTTGGTCAGG
CTGGTGTCCAGATTGGAAACGCCTGCTGGGAGCTCTACTGCTTGGAGCAC
GGCATCCAGCCCGATGGCCAGATGCCGTCTGACAAGACCGTGGGCGGAGG
TGATGACTCGTTCAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACG
TGCCCCGCGCCGTGTTTGTGGATCTGGAACCCACTGTGGTCGATGAGGTC
CGTACCGGAACCTACCGTCAGCTGTTCCACCCTGAGCAGCTGATCACTGG
TAAGGAGGATGCGGCCAACAACTACGCCCGTGGCCACTACACCATCGGCA
AGGAGATCGTCGATCTGGTTCTGGACAGGATCCGCAAGCTGGCCGATCAG
TGCACCGGTCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTAC
CGGCTCCGGCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACG
GCAAGAAGTCCAAGCTGGAGTTCGCCATCTACCCAGCCCCCCAGGTGTCC
ACTGCCGTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCT
GGAGCATTCCGACTGCGCCTTCATGGTCGACAACGAGGCTATCTACGACA
TCTGCCGCCGCAACCTGGACATTGAGCGCCCCACGTACACCAACCTGAAC
CGTCTGATTGGCCAGATCGTGTCCTCGATTACCGCCTCTCTGCGATTCGA
TGGTGCCCTTAACGTGGATCTGACTGAGTTCCAGACCAACTTGGTGCCCT
ACCCACGTATTCACTTCCCTCTGGTGACCTACGCCCCCGTTATCTCCGCC
GAGAAGGCCTACCACGAGCAGCTGTCGGTGGCTGAGATCACCAACGCCTG
CTTCGAGCCGGCCAACCAGATGGTCAAGTGCGATCCCCGTCACGGCAAGT
ACATGGCCTGCTGCATGCTGTACCGCGGTGATGTTGTGCCCAAGGACGTC
AACGCCGCTATTGCCACCATCAAGACCAAGCGCACCATTCAATTCGTCGA
CTGGTGCCCCACTGGCTTCAAGGTTGGCATCAACTACCAGCCACCCACCG
TGGTGCCTGGAGGTGATTTGGCCAAGGTGCAGCGTGCCGTGTGCATGTTG
TCCAACACCACGGCCATCGCCGAGGCCTGGGCCCGTCTGGACCACAAGTT
CGATCTGATGTACGCCAAGCGTGCCTTCGTCCACTGGTACGTTGGTGAGG
GTATGGAGGAGGGAGAGTTCTCCGAGGCCCGTGAGGATTTGGCTGCCCTC
GAGAAGGACTACGAGGAGGTCGGCATGGACTCCGGTGACGGCGAGGGTGA
GGGCGCTGAGGAGTACTAAAAGCTTTCTAGACCAT
BS30179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:31:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1353 | CG1913-PA | 1..1353 | 17..1369 | 6735 | 99.9 | Plus |
| alphaTub84D-RA | 1353 | CG2512-PA | 1..1352 | 17..1368 | 5185 | 92.2 | Plus |
| alphaTub85E-RA | 1350 | CG9476-PA | 26..1317 | 42..1333 | 4045 | 87.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1496 | 17..1369 | 6735 | 99.9 | Plus |
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1858 | 17..1368 | 5185 | 92.2 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 128..1419 | 42..1333 | 4045 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7087233..7088583 | 19..1369 | 6725 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7531259..7532610 | 17..1368 | 5185 | 92.2 | Plus |
| 3R | 32079331 | 3R | 9731362..9732152 | 1333..543 | 2500 | 87.7 | Minus |
| 3R | 32079331 | 3R | 9732286..9732781 | 537..42 | 1565 | 87.7 | Minus |
| 3L | 28110227 | 3L | 9682200..9683246 | 284..1330 | 1155 | 74 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:31:04 has no hits.
BS30179.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:26:39 Download gff for
BS30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 205..1555 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:12 Download gff for
BS30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 144..1494 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:52 Download gff for
BS30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84B-RA | 144..1494 | 17..1367 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:52 Download gff for
BS30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7087232..7088581 | 17..1367 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:12 Download gff for
BS30179.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2912954..2914303 | 17..1367 | 99 | | Plus |
BS30179.pep Sequence
Translation from 16 to 1368
> BS30179.pep
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY
*
BS30179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84B-PA | 450 | CG1913-PA | 1..450 | 1..450 | 2392 | 100 | Plus |
| alphaTub84D-PA | 450 | CG2512-PA | 1..450 | 1..450 | 2381 | 99.6 | Plus |
| alphaTub85E-PA | 449 | CG9476-PA | 1..449 | 1..450 | 2283 | 95.3 | Plus |
| alphaTub67C-PA | 462 | CG8308-PA | 1..456 | 1..445 | 1735 | 69.1 | Plus |
| CG7794-PA | 455 | CG7794-PA | 6..436 | 3..435 | 1279 | 53.6 | Plus |
