BS30181.complete Sequence
2144 bp assembled on 2012-09-28
GenBank Submission: KX802537
> BS30181.complete
GAAGTTATCAGTCGACATGATGACGGGCACCGACGATAGTCCGTTGGTGG
AGGAGGGCGGTCCGAAAGCCAACCAGTACCGACTGACCATTTGGCACAAG
GTCTCCATTTCCATGAACGAACCGGAAAACCTGAAACCACCTGCCAAATC
CAACTTCCGCCGTTATCTTCAGTGGATCCTAGCACCTGTCCTGACCGCCA
TTTCCGGTCTGATCCTCTACTACCAAGGGCCTTGGTATGGAGTGGCCACG
CTATATGCCGCATTGATATCCATACTGCTGGTGCGTCCAGGATGGCGCTG
GTTCTACATTGCAGCTGTTACCACACCCAGGGATACTGTAGCCCTCTTTG
CCTACATCCGTGTGCTGCTCTTCATTAAGCGCCAGGAGCGCAAGAACCTG
AACATCGGAGACATCTTTGAGTCAAATGTGGCCCGGCAGCCGGATAAACT
GGCCATTGTCAGTGAGTCCCAGCAGTGGACCTTCCGCCAGGTGAACGAGC
ATTCGAACCGGGTGGCCAACGTGTTCCACAGTCACGGCTACAAAAAGGGC
GACGTGGTGGGTCTGCTGCTCGAGAATCGCGCCGAATTTGTAGCCACCTG
GCTTGGTCTCTCCAAGATCGGCGTGATCACGCCGCTGATTAACACAAACC
TCCGTGGAGCCTCACTGCAGCACAGCATTACCGTGGGCCAGTGCACGGCG
CTCATTTACGGCGCCAGTTTCCGGTCGGCCGTGATGGATATCGCCAAGGA
TCTGCCCGCCCACGTCGGACTGTATCAGTTCAACGACGAGTCCAACCAGG
AGGTGGTGGCTTCCGAGGGCCTTAGCCAGGGACTGGCCCAGCAGTTGAAC
GGCCTTCTGGAGACGGCGGCCAAGGATAAGGTGGCCGCCGGCGCTTCTCG
GGCGGATCATCACGACAAGTTGGTCTACATCTACACGTCGGGCACCACGG
GCTTGCCCAAGGCAGCCGTCATCACGCATTCTCGGTACTTTTTCATAGCT
GCCGGCATTCACTACACGCTTGGCTTCAAGGATCAGGATGTGTTCTATAC
TCCCTTGCCCCTATATCACACCGCTGGCGGAGTGATGAGCATGGGCCAGG
CCTTACTCTTCGGCTCCACCGTGGTCATAAGGAAGAAATTCAGCGCCTCC
GGTTACTTTTCAGACTGCGCCCGCTTCCAATGCACGGTGGGACAGTACAT
TGGGGAGATGGCGCGCTACATCCTGGCCACGCCATCGGCTCCTCACGATC
GGAACCACCAAGTGCGAATGGTGTTCGGAAATGGACTGCGTCCACAGATT
TGGCCGCAGTTCGTGGAGCGCTTCGGGATTCGAAAAGTGGGCGAGTTCTA
CGGAGCCACTGAGGGCAATGCCAACATCATGAACAATGACAGCACAGTGG
GCGCCATTGGATTCATATCCCGCATACTGCCGCAGATCTACCCAATATCG
ATCATAAAAGCAGATCCACATACGGGAGAGCCTTTGAGGAACAGCCAAGG
ACTGTGTGAGAGATGCGAGGCGGATGAGCCAGGCGTCTTCGTTGGAAAGA
TTGTGCGGGGTAATCCCTGTCGGGAGTTCCTCGGCTACGTTGACCAGAAG
GCCTCCTCCAAGAAGGTGGTCCACGATGTCTTCTCCAAGGGCGACATGGC
CTTCATCTCGGGCGATCTGCTGGTGGCCGATGAGCGGGGCTATCTGTACT
TCAAAGATCGGACCGGCGACACTTTCCGCTGGAAGGGTGAGAATGTCTCC
ACCAGCGAGGTGGAGGCGCAGTTGAGCAATCTGGCTGGCTACAAGGATGT
GATTGTGTACGGCGTAAGCATACCCAACACTGAGGGCAGAGCAGGAATGG
CAGCCATCTACGATCCCACTCGGGAGGTCAACGTCAGCCAGCTGGGCGTG
GAACTGGCCAAATCCCTGCCCAACTACGCCAGGCCGCAGTTTCTCAGATT
CCTGCGCAAAATCGACCTGACGGGCACCTTCAAGTTGCGCAAGGTGGAGC
TTCAGCAGCAGGGCTTCAATCCGGAGATCATCGACGATGAACTCTTCTAC
GCCCAACCGGATGGCGTGTATGCTCCACTCACCCCATCCGTATACGAGAG
GATAGTTAGAAACGAGCTGCGATTCTAGAAGCTTTCTAGACCAT
BS30181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RB | 2112 | CG44252-PB | 1..2112 | 17..2128 | 10500 | 99.8 | Plus |
| CG44252-RD | 2145 | CG44252-PD | 116..2145 | 99..2128 | 10105 | 99.9 | Plus |
| CG44252-RE | 2145 | CG44252-PE | 116..2145 | 99..2128 | 10105 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RB | 2538 | CG44252-RB | 134..2250 | 16..2132 | 10510 | 99.8 | Plus |
| CG44252-RD | 2651 | CG44252-RD | 330..2363 | 99..2132 | 10110 | 99.8 | Plus |
| CG44252-RE | 2745 | CG44252-RE | 424..2457 | 99..2132 | 10110 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23060315..23061261 | 1186..2132 | 4675 | 99.6 | Plus |
| 2R | 25286936 | 2R | 23059352..23059999 | 340..987 | 3240 | 100 | Plus |
| 2R | 25286936 | 2R | 23059053..23059293 | 99..339 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 23060055..23060259 | 984..1188 | 1025 | 100 | Plus |
| 2L | 23513712 | 2L | 10511929..10512602 | 1866..1193 | 985 | 76.4 | Minus |
| 2L | 23513712 | 2L | 10513191..10513446 | 713..458 | 620 | 82.8 | Minus |
| 2R | 25286936 | 2R | 23058381..23058467 | 16..102 | 420 | 98.9 | Plus |
| 2L | 23513712 | 2L | 10512933..10513008 | 986..911 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:22:58 has no hits.
BS30181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:32 Download gff for
BS30181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30194-RB | 100..2211 | 17..2128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:15 Download gff for
BS30181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RB | 135..2246 | 17..2128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:00 Download gff for
BS30181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RB | 135..2246 | 17..2128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:00 Download gff for
BS30181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23059055..23059293 | 101..339 | 100 | -> | Plus |
| 2R | 23058382..23058465 | 17..100 | 98 | -> | Plus |
| 2R | 23059352..23059996 | 340..984 | 100 | -> | Plus |
| 2R | 23060056..23060257 | 985..1186 | 100 | -> | Plus |
| 2R | 23060316..23061257 | 1187..2128 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:15 Download gff for
BS30181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18945905..18945988 | 17..100 | 98 | -> | Plus |
| arm_2R | 18946578..18946816 | 101..339 | 100 | -> | Plus |
| arm_2R | 18946875..18947519 | 340..984 | 100 | -> | Plus |
| arm_2R | 18947579..18947780 | 985..1186 | 100 | -> | Plus |
| arm_2R | 18947839..18948780 | 1187..2128 | 99 | | Plus |
BS30181.pep Sequence
Translation from 16 to 2127
> BS30181.pep
MMTGTDDSPLVEEGGPKANQYRLTIWHKVSISMNEPENLKPPAKSNFRRY
LQWILAPVLTAISGLILYYQGPWYGVATLYAALISILLVRPGWRWFYIAA
VTTPRDTVALFAYIRVLLFIKRQERKNLNIGDIFESNVARQPDKLAIVSE
SQQWTFRQVNEHSNRVANVFHSHGYKKGDVVGLLLENRAEFVATWLGLSK
IGVITPLINTNLRGASLQHSITVGQCTALIYGASFRSAVMDIAKDLPAHV
GLYQFNDESNQEVVASEGLSQGLAQQLNGLLETAAKDKVAAGASRADHHD
KLVYIYTSGTTGLPKAAVITHSRYFFIAAGIHYTLGFKDQDVFYTPLPLY
HTAGGVMSMGQALLFGSTVVIRKKFSASGYFSDCARFQCTVGQYIGEMAR
YILATPSAPHDRNHQVRMVFGNGLRPQIWPQFVERFGIRKVGEFYGATEG
NANIMNNDSTVGAIGFISRILPQIYPISIIKADPHTGEPLRNSQGLCERC
EADEPGVFVGKIVRGNPCREFLGYVDQKASSKKVVHDVFSKGDMAFISGD
LLVADERGYLYFKDRTGDTFRWKGENVSTSEVEAQLSNLAGYKDVIVYGV
SIPNTEGRAGMAAIYDPTREVNVSQLGVELAKSLPNYARPQFLRFLRKID
LTGTFKLRKVELQQQGFNPEIIDDELFYAQPDGVYAPLTPSVYERIVRNE
LRF*
BS30181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-PB | 703 | CG44252-PB | 1..703 | 1..703 | 3662 | 100 | Plus |
| CG44252-PD | 714 | CG44252-PD | 39..714 | 28..703 | 3508 | 99.9 | Plus |
| CG44252-PE | 714 | CG44252-PE | 39..714 | 28..703 | 3508 | 99.9 | Plus |
| Fatp-PE | 626 | CG7400-PE | 4..626 | 76..703 | 2345 | 69.3 | Plus |
| Fatp-PD | 668 | CG7400-PD | 46..668 | 76..703 | 2345 | 69.3 | Plus |
