BS30184.complete Sequence
2831 bp assembled on 2012-09-28
GenBank Submission: KX802991
> BS30184.complete
GAAGTTATCAGTCGACATGCTGCGAATTGATAAAATACTTGTGGTTTCGC
GTGGGAAGGCGAGTTCCGTTGAAGTCGCAGCACTGCGTTACATAGCTGCA
TCTATTGCTACAGCCACGTTGGATTCTCAATCCTCACAGCAAATAAAGGC
GGTCTCCAGTCCAACGCTGTCCGAGCCGTGCTTAGAGGAGCAGCCACAAA
AAGGAACTGAAAGTACGGATGTGGCCAACACAGGCAGCAGCGCCGGAAGT
GGAGGCCTAGGCGTATTGCAGAAATTCAAACGCACCTTGAACAACTTTAA
CAACAAAAATCAATTGCACATCTCTCCGCTATCACCAGCGGCAGTAGCAC
CTATGATAACGACGACCACAGCTAGCGATCCTGGCTCAGAGGCCGGCGAT
ACGAGCTCCGGAAAATACCGGTTTGGGCCCCTTATTTGGCGTTCTTCCAA
AGAACGCCGTAAGACGAAGTACAACCGACGCGACAAGTGTAATTCTGGTG
ATTCAGGCATACAGATCGAACTAGAACAGGATGAGCAATACTCCCGTGCG
ACAATGGCCGTGAGCCGCCAGGATGAGCCCCGCGCTTTTGCGTTAACCAA
TGGATCGTGTGGTGTCGCGCTCTCTAAAATGCGAGCCATACGTCGCACCA
ACTCTGCAAAGGCGAGCAGCATCCTTGGGCCCTTTATCGTTAAAACCAAA
ATAGCCAAGCACTTAAACATTGGAGAGTCTGACAAAGCCGAGCGCAAAGC
GCCCGAGTCTCTACCCACGCGATCGCTTAGCCAACCGAACGGCCTAGAGT
CCTACGGTATGGGTCGTCCCGATCTTGAGGATAGCGACAGCGATAGTGTC
GCGTCAAACGAGGAAGCTATAAGCTTCTACCCAACTACCTATGCGGAGGT
GCTTTACAACTTCACGGCCGGCGGTCCACAAGAACTAGGGCTAGAGAGAG
GAATGCTTATTGAAATACTGCGCAAGGAAGTTGGACCCTGGTGGTTCGGC
CGAATTAAGAAGGAGGAAACCAATCTGGTGGAAGACATATTGGGTCCTGA
GCTGGGCTGGTTCCCCAAGGAGTTTGTGCGCATTATTCACTGTCCAGAGA
CGGACAATTTCTTTATAGCGCACAGGGCTGCCGCTGATGAGGCGGCGGCT
GAGGAAGCCACTGCTCGTGCAGAGGAAGGGTCTGTTCCTGTTCCCGTTGC
GGCATTTGCCGAGGACACAGACGTTACCGTCACCACAGACCAAAGCAACG
TCACCCTTATAGTCATTGAATCACCACCAACTCCGAGTGCACCCAGTGTG
GACTTTGTTGCCCAACCGGATCACAGCACGATCATACGCCGCAGTGCCGT
TCGCGAACTGCTTGATACGGAGGTCAATTATGTAAAGCTGCTAGCAGCCA
TTTGTGATGGGTACCTGCCAGCTATGAGCAAGCGAATCGATATATTTTCG
CCAAACAGTATTCGGCTTATCTTCTCCAACATAACGGCCATTTACAAGTT
TCAGCGAAAGTTTCTTGAAGCCTTACGACGAGGAATCGAGCAAAACCAAG
TTGCCAAAGTTTTCCTCAAAATGCACAAAGGTTTCCTTTGCTACTCCACC
TATTGTAACGCATACCCTCGAGCCCTGATAGAACTTGAGACCTACGATCG
CGTAAAAGACGCCCGTACAATTCTTGAGAACTGTCGCGAATCCCAAAACC
TGGCCGAGCTGCCCCTCTCTGCGCACCTGCTGGCACCTGTGCAACGAATC
TGCCGCTATCCCCTGCACCTCAACGAGATTATTAAGTCGGCATTGGAAAA
GGGAGCCAAGGAAGGGAACGATACAGACGGTGCGAAGTCAGCTGGCAAGA
CAACTGACTATGAGCAACTCGATGTTACTGAACTAGACATACCCGACTCT
CAAGATACTGTTAATTTGGCGCTAGAAGCGATGCGCGGCATCACAGAAGC
AGTCAATGAGGGCAAGCGCCACAGCGAGACGATTGCAAGGCATCAAGCCA
GCTTCCAAAACTTTAAGGGCCCGCCGCTGCACTTGCATAGTGCTCGCTTC
TTCCTGCAAGTCGATGCCACGCGGCAGAAACAGAATCTGTGGAACAGCAG
CTATACTCTGTTTCTTTTTGATAACCAGCTCGTTTACTGCAAGCGAGATA
TTATTAAGCGGAGCCACTTCATCTACAAAGGACGCATTTTTCTCGATCGC
TGTCGCGTGGTAAACGTGAGGGATGGAAAAATGTTTGGGCACACCATTAA
GAACTCCCTACGCATATATAGCGAGTCTCGAGACAAATGGTACGATTTTA
GTTTCCGTTCGGCGAACCGCAAGCATCGCTTCCTAAGCACTCTCGCCCTG
GAGCGCCAGTTTGGTGGTAAAGCTCTATACGTATCAGAGATGACTGGATT
CGAGTACAATTACGAGGAGCGGCCGGGCGATTACTCAGACCAATCAGATT
ACGATGCACAAGATTTTGAATTAGCAACTGGGGTCACCAGTGGTGAGAGC
TCACTGCCGGAGTCGCCGGCCAAATCTACGTCTCGCCTGTGTGAGACACT
GCCAAAAAAATCTCAGTCCAGGGACGGAATATCCAGCGCTGAAAACTCTC
AAATAGTCACTACCACATCGACAGGTTCGCTAGGAAGGCGGCATTTTGGC
AATTGGTTCCGCAAGCCAAAGAGCGCAAACTGCACTCCAAGTCAATCACC
GACGCATAAGCCAAGCTTCGACGCAGACGCTACGCTCACGGAAGCCCGGG
TTGCTGCGATGGAACTGGCTGAAGCCGCGGCCGCACTAGTGCCAACGGAC
AGCTCCTCAGCGTAAAAGCTTTCTAGACCAT
BS30184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RB | 2799 | CG43976-PB | 1..2799 | 17..2815 | 13860 | 99.7 | Plus |
| RhoGEF3-RE | 2793 | CG43976-PE | 1..2793 | 17..2815 | 13735 | 99.5 | Plus |
| RhoGEF3-RM | 10557 | CG43976-PM | 8087..10557 | 345..2815 | 12220 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RB | 3086 | CG43976-RB | 163..2962 | 17..2816 | 13865 | 99.7 | Plus |
| RhoGEF3-RK | 3157 | CG43976-RK | 150..2945 | 17..2816 | 13770 | 99.5 | Plus |
| RhoGEF3-RE | 3168 | CG43976-RE | 163..2956 | 17..2816 | 13740 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 302749..303884 | 1681..2816 | 5650 | 99.8 | Plus |
| 3L | 28110227 | 3L | 301756..302304 | 865..1413 | 2715 | 99.6 | Plus |
| 3L | 28110227 | 3L | 301160..301681 | 345..866 | 2580 | 99.6 | Plus |
| 3L | 28110227 | 3L | 300895..301108 | 134..347 | 1070 | 100 | Plus |
| 3L | 28110227 | 3L | 302361..302522 | 1412..1573 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 300732..300848 | 17..133 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 302584..302691 | 1573..1680 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:22:47 has no hits.
BS30184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-28 18:20:31 Download gff for
BS30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RB | 163..2959 | 17..2813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:13 Download gff for
BS30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RB | 163..2959 | 17..2813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:55 Download gff for
BS30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RB | 163..2959 | 17..2813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:55 Download gff for
BS30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 302360..302522 | 1411..1573 | 98 | -> | Plus |
| 3L | 302585..302691 | 1574..1680 | 100 | -> | Plus |
| 3L | 300732..300848 | 17..133 | 100 | -> | Plus |
| 3L | 300895..301108 | 134..347 | 100 | -> | Plus |
| 3L | 301163..301681 | 348..866 | 99 | -> | Plus |
| 3L | 301758..302301 | 867..1410 | 99 | -> | Plus |
| 3L | 302749..303881 | 1681..2813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:13 Download gff for
BS30184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 300732..300848 | 17..133 | 100 | -> | Plus |
| arm_3L | 300895..301108 | 134..347 | 100 | -> | Plus |
| arm_3L | 301163..301681 | 348..866 | 99 | -> | Plus |
| arm_3L | 301758..302301 | 867..1410 | 99 | -> | Plus |
| arm_3L | 302360..302522 | 1411..1573 | 98 | -> | Plus |
| arm_3L | 302585..302691 | 1574..1680 | 100 | -> | Plus |
| arm_3L | 302749..303881 | 1681..2813 | 99 | | Plus |
BS30184.pep Sequence
Translation from 16 to 2814
> BS30184.pep
MLRIDKILVVSRGKASSVEVAALRYIAASIATATLDSQSSQQIKAVSSPT
LSEPCLEEQPQKGTESTDVANTGSSAGSGGLGVLQKFKRTLNNFNNKNQL
HISPLSPAAVAPMITTTTASDPGSEAGDTSSGKYRFGPLIWRSSKERRKT
KYNRRDKCNSGDSGIQIELEQDEQYSRATMAVSRQDEPRAFALTNGSCGV
ALSKMRAIRRTNSAKASSILGPFIVKTKIAKHLNIGESDKAERKAPESLP
TRSLSQPNGLESYGMGRPDLEDSDSDSVASNEEAISFYPTTYAEVLYNFT
AGGPQELGLERGMLIEILRKEVGPWWFGRIKKEETNLVEDILGPELGWFP
KEFVRIIHCPETDNFFIAHRAAADEAAAEEATARAEEGSVPVPVAAFAED
TDVTVTTDQSNVTLIVIESPPTPSAPSVDFVAQPDHSTIIRRSAVRELLD
TEVNYVKLLAAICDGYLPAMSKRIDIFSPNSIRLIFSNITAIYKFQRKFL
EALRRGIEQNQVAKVFLKMHKGFLCYSTYCNAYPRALIELETYDRVKDAR
TILENCRESQNLAELPLSAHLLAPVQRICRYPLHLNEIIKSALEKGAKEG
NDTDGAKSAGKTTDYEQLDVTELDIPDSQDTVNLALEAMRGITEAVNEGK
RHSETIARHQASFQNFKGPPLHLHSARFFLQVDATRQKQNLWNSSYTLFL
FDNQLVYCKRDIIKRSHFIYKGRIFLDRCRVVNVRDGKMFGHTIKNSLRI
YSESRDKWYDFSFRSANRKHRFLSTLALERQFGGKALYVSEMTGFEYNYE
ERPGDYSDQSDYDAQDFELATGVTSGESSLPESPAKSTSRLCETLPKKSQ
SRDGISSAENSQIVTTTSTGSLGRRHFGNWFRKPKSANCTPSQSPTHKPS
FDADATLTEARVAAMELAEAAAALVPTDSSSA*
BS30184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-PB | 932 | CG43976-PB | 1..932 | 1..932 | 4775 | 100 | Plus |
| RhoGEF3-PE | 930 | CG43976-PE | 1..930 | 1..932 | 4753 | 99.8 | Plus |
| RhoGEF3-PC | 925 | CG43976-PC | 1..925 | 1..932 | 4600 | 95.5 | Plus |
| RhoGEF3-PM | 3518 | CG43976-PM | 2600..3518 | 32..932 | 4572 | 97.3 | Plus |
| RhoGEF3-PL | 3519 | CG43976-PL | 2601..3519 | 32..932 | 4572 | 97.3 | Plus |
