BS30189.complete Sequence
3656 bp assembled on 2012-10-15
GenBank Submission: KX804066
> BS30189.complete
GAAGTTATCAGTCGACATGAGTCGCTTGCAAAAGCAAAACTACGAGATCT
TAAGCGGTACAAGTACGTCGCGCCTCAAGAATCATCAACATCCCCGTGAA
TCGGAGTCACTAGCCTACGAGGAGCCAGATCAAATGGTGCGGAATCATCT
AAATGGCCAGCTGGTAGCCAATGGCAATGGCAAAACGCGAAAGAATAGCA
ATTCCGAAACGATGACCAATGGGAAAAAGTCCAAACTGAATACGGAGGGA
TCCGGCTCTGGTTCTGGAAAGACCTTGAACTACAATAATAATAACAATAA
CAACAACAGCATCAGTGCCACCAACGGTCAGTACACCAATAGCAGCAGCA
AGACCACTTCAGCATCTGCAAGGGATTACACTTACCGCGAGACCATATCA
CCGCCCACACCTCCATCCCCGCCCACCACAAATGTGGCGGATATTGTTTG
CATATCGGATGCGGAGAGCGAGGACGGACGTGATCCCGAGCGGGAGTACT
ACGACCAGGACATGGAGGAGGATGAGCCGAACGGGATAGAGATCGATGAA
TCCAGCTCCAGCTTGTCCAAGGCCAAGTCCAACAATGCAGCTGCAGCGGC
GGCGGCGGCGGCTGCAGCAGCGGCAGCAGCAGCCTCGAAGGCCTCCTCGT
CGACCACGCCCTCCTACGCCATGCCCACCAGCAATAGTACACCCCTTGAT
CTGGACAATGAGGCCCATCAACGGGACCTGGAGGCGGTCACCGATCTGAA
ATACTACGTAAAATTGTACAGTGATGAGGCCGTTAGTCTGAATGACTTCA
AAATAATACGCGTTCTCGGAACAGGTGCCTATGGGCGGGTTTTCCTCGTT
CGCAAGCTAACTAGACACGATGCCGGAAAATTGTATGCAATGAAGGTTCT
CAATAAGATAACGGTGGTCCAGAAGCGAAAAACCGCGGAACACACCAAAA
CGGAGAGAGTGGTACTGGAGGCCATTCAACGTAATCCCTTCCTCGTGAGT
CTACACTACGCCTTCCAATCCTCATCAAAGCTTTACCTCGTGCTAGACTT
TGCCAATGGCGGTGAGCTCTTCACGCATCTCTACCACTCTGAGAACTTTG
AGGAGTCCCGGGTGCGTGTGTACATAGCCGAGGTGGTGCTGGCCCTGGAG
CAACTGCATCAGTTGGGGATCATCTATCGAGATATTAAGTTGGAGAATAT
TTTGCTTGATGGCGAGGGGCACATTGTTCTGTCCGACTTTGGACTGTCGA
AGATCCTTACCGCGGAGAATGAATACCGTGCGCATAGCTTCTGCGGCACT
CTGGAGTATATGGCACCTGAGATAATCCGTACGGGGCCGCCAGGACACGA
CAGTGCCGTGGACTGGTGGTCGGTGGGTGTGCTCACTTTTGAGCTGCTCA
CCGGCGCTTCGCCATTCGCCACGTCCGACGGCCAGGTCCAGCAATCGGAA
ATCTCGCGGCGGATTCAGAAGGAGCAGCCAATGATTCCCTCATCGTTCAG
TGCCAACGCCCGCGACTTTGTGCTAAAGATGTTGGAAAAGAATCCAAAGC
GGCGCTTGGGTGGCAACCATCGCGACGCCAGCGAAATCAAGGAGCACCCC
TTCTTCAACGGCATTAACTGGCAGGAGTTGCGGACAAAGCGCCGCAAAGC
CCCCTATAAGCCCACCCTCACCGCCGAGGACGATGTGCAGAACTTCAGCA
ACGAGTTTACCGACCAAGTGCCCGAGGATCCCGAGTGCGATGCTCCGCCC
AGCCGGATACGACTATTTCGCGGTTACACATACGTGGCGCCAGAGCATTT
GGAGCAGATGCGAAGGGATAACCACTGTGAGATTCAATACTTTAATACAG
GACTTCAGAATATACCTTGTCGGCCAGATGATCTTGAATTGGGCACACGC
ACTTCAAACGGAGCCTATGGCACATGCCATTTTGTGGTGGACAGCTCTAC
GGATTTGGTGTTTTTGGCCAAAATAATACCGCTATCCAAGTTCCGCCCCT
CCGAGGTCGACGCGCTGATCTCGTGCGCTCTCGACACGACCAATCACAAA
AATATCGTAAGCTACCATGGAACGTTCAGGGAAAAGTGCGAGACATGGAT
CGTTATGGAGTACCTGTCCGGCCCGGAGCTGACCGCATCCATTCGCATGG
ATGAGGATTCGTGTCGGGAGATCTTTCTGCAGCTGGTCATGGCTGTGCGG
CACATACACTCCAAGCACTTTATACACGGTGACCTGAAACCGGAGAACAT
AATGTTCGAGAACCGAGAGGATAGGACTGTCAAACTGATCGATTTTGGCA
GCGCATGTTACAATAATCGCTTTAAGAGCTGGAAGGACAAGCCGCGCTAC
ACGCTGGACTATGCTCCGCCAGAAATGCTCGCGGATGCGAATCTCGTTAC
TTATTCGCCAGCCGTGGATATATACGGTCTTGGGGCCACGCTGTATACCA
TGCTGGTGGGTCATCGGCCGTACAGACAGAACGAAGACGATGTGGATCAT
TCCGCAGCGGCCCATCACGAGCTTCGAAAGCGAATGCGCCGGGGAACGTT
TAATCAGCGTTCTATGCGCTGGGAGAGTGCAAGTCCTGCGTTCCGACATT
TGGTTAGCTGGTGTCTGCAGCGGGATCCGGCTGATCGGCCCACATTGTCA
GATATTCTCGACAGCGAGTGGCTGCAGTACGGCTCAAATGATCCGGACGT
GGATATCATTCTGCCACAACAGATGGTTGTGGACCTCAGCGAAGACACTA
TGGAACAACCGACGGGAGGTATGTTCGACGATCAGCAACAACTGGAATTC
ATGCACGACAAGTCGGCGGAGGATGAGGGCATAACCCTAGTCAGCGAGCC
CATGGATACGACTGTCGCGACTCACGAGTCTAGGAGAAATGCAGCCGCAT
TTTCGTCGGTAGTTGCTCCAACCACCGACGACGAGATAGTGCACGAACGA
TTTGACCCGGCATTTGAGGTCCAAGCGGACTTCTACGGTTTCGACGAGAA
TGCGCCGCCTCTGCCTCTGCCCGAGGAGTACTACTCCGAACTACCTCTGC
CAGAGGAGGACCGGCAGTACATACCACCTCCACCAGCACTGATTCCTGTT
GAACCAGAAACGACCTTCCGACGGCCAAGAACACGCCAGCAGCGTCGCAC
TGAAAGCCAGCTAGTACAACCTGTTTCCGTCGCTACGTATGAGGACAGCA
AGGCGTCCCTGCGCGTACTAATGCAACAGCTGCCGCCGCCAGGTGACAAT
GTGGTAGCACGCATTCCGAAGAGAACACATCGAGTCGTACGTACATTGCC
TCCGACCTTTGGAACCACCAAGCGAGAAGAGAATTTCTATGGATTTAGTA
AGACAGCAATATCGTGGCGAAAGACTCGGGCCAGCTGGCGTCACTTCTGT
CTGCTTATCAATGGTGTGCAGCAGGTGCTTAAGGTTCGGTTCAAAAAAGC
GCGTCGCGTCTACTGCCTGCCCCATATAAAAGAGGAAAAACTTGATCATG
CGTACGAAAAACCGTTGACGTTCCCGCGGCCAAAGGCACAACTGAAGCGC
ACCAAGCGGGAGCCCAAGGTGCCGCGGCCACCGACTCGAGTTCAGCCGGA
GAGGGCGCGGGCAATGCGTCAACTTTATCAGTTCCAATGAAAGCTTTCTA
GACCAT
BS30189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:39:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JIL-1-RC | 3624 | CG6297-PC | 1..3624 | 17..3640 | 18105 | 100 | Plus |
| JIL-1-RA | 3624 | CG6297-PA | 1..3624 | 17..3640 | 18105 | 100 | Plus |
| JIL-1-RB | 3624 | CG6297-PB | 1..3624 | 17..3640 | 18105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JIL-1-RC | 6550 | CG6297-RC | 1055..4679 | 16..3640 | 18110 | 100 | Plus |
| JIL-1-RA | 5712 | CG6297-RA | 217..3841 | 16..3640 | 18110 | 100 | Plus |
| JIL-1-RB | 5147 | CG6297-RB | 1055..4679 | 16..3640 | 18110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11080623..11081956 | 3640..2307 | 6670 | 100 | Minus |
| 3L | 28110227 | 3L | 11082526..11083339 | 1858..1045 | 4070 | 100 | Minus |
| 3L | 28110227 | 3L | 11090898..11091640 | 758..16 | 3700 | 99.9 | Minus |
| 3L | 28110227 | 3L | 11082016..11082466 | 2307..1857 | 2255 | 100 | Minus |
| 3L | 28110227 | 3L | 11085426..11085563 | 964..827 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 11083401..11083486 | 1046..961 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 11085640..11085709 | 827..758 | 350 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6903 | 278..433 | 186 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6859 | 278..371 | 177 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2666 | 290..656 | 166 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2413 | 266..370 | 164 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6820 | 258..371 | 162 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2538 | 267..420 | 159 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2464 | 283..370 | 154 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6879 | 278..370 | 152 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6906 | 267..370 | 145 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2533 | 278..370 | 143 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2362..2440 | 293..370 | 140 | 65.8 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2624..2673 | 277..325 | 139 | 78 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6714..6793 | 287..371 | 135 | 66.3 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1239..1318 | 272..351 | 129 | 65.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1164 | 278..367 | 128 | 61.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2632..2663 | 278..309 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1589 | 295..371 | 122 | 66.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 523..627 | 272..375 | 117 | 60.7 | Plus |
BS30189.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:16 Download gff for
BS30189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RA | 218..3840 | 17..3639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:13 Download gff for
BS30189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RB | 1056..4678 | 17..3639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:58 Download gff for
BS30189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| JIL-1-RB | 1056..4678 | 17..3639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:58 Download gff for
BS30189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11080624..11081955 | 2308..3639 | 100 | <- | Minus |
| 3L | 11082016..11082464 | 1859..2307 | 100 | <- | Minus |
| 3L | 11082526..11083337 | 1047..1858 | 100 | <- | Minus |
| 3L | 11083401..11083485 | 962..1046 | 100 | <- | Minus |
| 3L | 11085429..11085562 | 828..961 | 100 | <- | Minus |
| 3L | 11085640..11085708 | 759..827 | 100 | <- | Minus |
| 3L | 11090898..11091639 | 17..758 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:13 Download gff for
BS30189.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11073724..11075055 | 2308..3639 | 100 | <- | Minus |
| arm_3L | 11075116..11075564 | 1859..2307 | 100 | <- | Minus |
| arm_3L | 11075626..11076437 | 1047..1858 | 100 | <- | Minus |
| arm_3L | 11076501..11076585 | 962..1046 | 100 | <- | Minus |
| arm_3L | 11078529..11078662 | 828..961 | 100 | <- | Minus |
| arm_3L | 11078740..11078808 | 759..827 | 100 | <- | Minus |
| arm_3L | 11083998..11084739 | 17..758 | 99 | | Minus |
BS30189.pep Sequence
Translation from 16 to 3639
> BS30189.pep
MSRLQKQNYEILSGTSTSRLKNHQHPRESESLAYEEPDQMVRNHLNGQLV
ANGNGKTRKNSNSETMTNGKKSKLNTEGSGSGSGKTLNYNNNNNNNNSIS
ATNGQYTNSSSKTTSASARDYTYRETISPPTPPSPPTTNVADIVCISDAE
SEDGRDPEREYYDQDMEEDEPNGIEIDESSSSLSKAKSNNAAAAAAAAAA
AAAAAASKASSSTTPSYAMPTSNSTPLDLDNEAHQRDLEAVTDLKYYVKL
YSDEAVSLNDFKIIRVLGTGAYGRVFLVRKLTRHDAGKLYAMKVLNKITV
VQKRKTAEHTKTERVVLEAIQRNPFLVSLHYAFQSSSKLYLVLDFANGGE
LFTHLYHSENFEESRVRVYIAEVVLALEQLHQLGIIYRDIKLENILLDGE
GHIVLSDFGLSKILTAENEYRAHSFCGTLEYMAPEIIRTGPPGHDSAVDW
WSVGVLTFELLTGASPFATSDGQVQQSEISRRIQKEQPMIPSSFSANARD
FVLKMLEKNPKRRLGGNHRDASEIKEHPFFNGINWQELRTKRRKAPYKPT
LTAEDDVQNFSNEFTDQVPEDPECDAPPSRIRLFRGYTYVAPEHLEQMRR
DNHCEIQYFNTGLQNIPCRPDDLELGTRTSNGAYGTCHFVVDSSTDLVFL
AKIIPLSKFRPSEVDALISCALDTTNHKNIVSYHGTFREKCETWIVMEYL
SGPELTASIRMDEDSCREIFLQLVMAVRHIHSKHFIHGDLKPENIMFENR
EDRTVKLIDFGSACYNNRFKSWKDKPRYTLDYAPPEMLADANLVTYSPAV
DIYGLGATLYTMLVGHRPYRQNEDDVDHSAAAHHELRKRMRRGTFNQRSM
RWESASPAFRHLVSWCLQRDPADRPTLSDILDSEWLQYGSNDPDVDIILP
QQMVVDLSEDTMEQPTGGMFDDQQQLEFMHDKSAEDEGITLVSEPMDTTV
ATHESRRNAAAFSSVVAPTTDDEIVHERFDPAFEVQADFYGFDENAPPLP
LPEEYYSELPLPEEDRQYIPPPPALIPVEPETTFRRPRTRQQRRTESQLV
QPVSVATYEDSKASLRVLMQQLPPPGDNVVARIPKRTHRVVRTLPPTFGT
TKREENFYGFSKTAISWRKTRASWRHFCLLINGVQQVLKVRFKKARRVYC
LPHIKEEKLDHAYEKPLTFPRPKAQLKRTKREPKVPRPPTRVQPERARAM
RQLYQFQ*
BS30189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| JIL-1-PC | 1207 | CG6297-PC | 1..1207 | 1..1207 | 6332 | 100 | Plus |
| JIL-1-PA | 1207 | CG6297-PA | 1..1207 | 1..1207 | 6332 | 100 | Plus |
| JIL-1-PB | 1207 | CG6297-PB | 1..1207 | 1..1207 | 6332 | 100 | Plus |
| S6kII-PB | 911 | CG17596-PB | 161..835 | 221..887 | 925 | 35.1 | Plus |
| S6kII-PA | 911 | CG17596-PA | 161..835 | 221..887 | 925 | 35.1 | Plus |
