BS30212.complete Sequence
2723 bp assembled on 2012-10-15
GenBank Submission: KX802978
> BS30212.complete
GAAGTTATCAGTCGACATGAAGGTCATGGACGCTTTGCAATCTGGACGGA
GAAAGCCATTACCAGTGGCTCTTCTATGCATCCTAGTCACTGTGTTCTGC
GTCTTGGAGTGCCATGGAGCTGACCTGACATCACCCACCAAGAAGTCCGC
TCCCCTTCGAATAACCAAACCACAGCCCACAAGTCAGCAGGCCAAGCCCA
TCAGTATTACCACAAGGGCCCCAACAACGGTGGCATCAACCACCGATGAT
GAAGTCTCCAGCTCCGTCGATGGTCAGCTGGCCCCGCTCATCTCATCCAC
AACCGAGGGACCCAGCAGTGGAACAACTGCCAGCTTAGTGCCGGAAATAT
GTCTCAATGGTCTGCAGTTGACGGTCAATAGTGCGGATGAGGGAACGGTT
ATACGGAAGCAGGAGGAGTTTGTCAAGATACTCGAAGGAGATGTGGTGCT
CAGTGTCTTGACCAAGGACCCCGACTCCGCGTTGTTCGTAATCAATCGTG
TGAACCAGGCGAATCTTATAATGGCAGACTTTGAAATTGGAATTCGCGCC
ATCAGCATCGACAACGCCAGCTTGGCAGAGAACTTGCTTATTCAAGAAGT
TCAGTTTCTGCAGCAGTGCACGACGTACTCGATGGGCATATTCGTTGACT
GGGAGCTGTACAAACAACTGGAGTCTGTTATCAAGGACTTGGAATACAAT
ATCTGGCCAATACCGGGAACGCGGGCGCACCTCTTTCCCAAAGTTGCGCA
CTTGCTGCATCAAATGCCTTGGGGCGAAAAAATCGCATCCGTGGAAATAG
CAACCGAAACGCTGGAGATGTACAATGAATTCATGGAAGCCGCTCGCCAG
GAGCACATGTGCCTCATGCACTTCAAAAGTGACGATAATGTTTACATAAT
GTTTGGCAATAAGCTAGCTAGTCACTTCAAGGAAAACGGCACTCTGTTTT
CCGTGCCCACCGATAGAACGGACGATGAATTTCTGGCAGACTTACCAAAC
AGAGCTTTTGTCCTAATGGAAAACGAAATTGACCTGAGCACCGCCGTTGA
ATTGGACGCCACGCCCACCGCTTTGGACGAGATCCTGATCGGGAAGAGTG
TGTTACCATCGCGAGTCCTGAGCTTTGCCGGCTCCATAATCGACCTGATG
AACTGGCTGCGCGGATCCCTGTCCAAGCACTGTAAGCGTGGTGAGGAGCA
CGACTTGTATGTGCTGGAGAGCTGTTTCAACTTCCTGAACTTCATCGAGG
ACTGGCGAACCTCGGAGTACCGACAAGCCCATGATACGGCTGAGATCCTG
TCGCTGCTGCTGATGCGCAAGTTGGGCACCGCCATGAACTTTCAGATGTA
CCAGAAGAAAGTGTTGACGCTGGACAAGATCACAGGTGAATCGCGTACCG
AACTGCGCGAGATTGCGTCGCAGAACTTTGTGACCAATGTGACCACGTAC
TATCACTATAATCGGGACAATCACACCAGTTTGGAGCTGAAGACCAAGTT
TGGTCAGGTGTTCAACTGCCAGTACAGTGCTGGTGACAATAGGAGATATC
CATTCCTTTTCGATGGTGAATCCGTTATGTTCTGGCGCATCAAGATGGAC
ACATGGGTGGCAACTGGGCTGACGGCTGCTATCCTGGGCCTGATTGCCAC
GCTCGCCATCCTGGTGTTCATTGTGGTGCGCATCTCGTTGGGCGATGTCT
TCGAGGGAAATCCGACCACCTCGATTCTCCTTCTACTCTCCCTCATCTTA
GTGTTTTGCTCCTTTGTGCCCTATTCGATTGAATACGTGGGTGAGCAGCG
CAATTCGCATGTGACCTTCGAGGATGCCCAGACTCTGAATACCCTGTGCG
CGGTGAGGGTGTTCATCATGACTCTGGTCTACTGTTTTGTTTTTTCCCTG
CTCCTCTGTCGCGCCGTGATGTTGGCTTCAATTGGTTCCGAAGGTGGCTT
CCTATCCCATGTGAATGGATATATTCAGGCAGTGATTTGCGCCTTTAGTG
TTGTGGCCCAAGTGGGCATGTCCGTGCAACTTCTGGTGGTGATGCACGTC
GCCTCGGAGACTGTGTCCTGTGAGAATATTTACTATGGTCGATGGTTGTG
GGGACTGTTGGCCTACGACTTTGCTCTACTGTGCTGTGTGGGCGCCTTGA
TACCCTCTATATACAGATCCCAACGAAACTATCGCGAGGGAATACTCATT
GTCATTGGATCGGTTTTAATTATGGTAATTTGGGTGGCCTGGATAGCGCT
ATCCTTATTCGGGGACGAGTGGAGGGATGCGGCCATTCCATTGGGATTGC
AGGCCTCTGGTTGGGCGGTACTGGTGGGCATTCTGATACCACGCACCTTC
CTCATCGTAAGGGGTATCGAGCGGTCGGATATTGCCCAAGCTCTGCCTTC
ACTCACTTCGCTGGCTTTTGCCCAGAACAATCAATACTCCTCGGAACAGA
GTGTTTACGAGTGCGTGAATCCCGCCATGCGCCATTGTTCCCAGGATGAG
GTGAACCACCAGTCGCCTAGTGAGATTCCCACGTTACCCCTTCGAGGAGG
TGGCCCACGTCGCCAGCAGTTCTTTGCCAATCTCCGCCAGGCCAATGCCA
ACATTAATCCACAACGTCCTCCACCTCGACCCCAGCAGAGTCCCTCCCGA
TCCTCGGTGTCCTCGCTGCCGCCCTCGCCCGATCACAACAAGATCACCCG
GTTTTAGAAGCTTTCTAGACCAT
BS30212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boss-RA | 2691 | CG8285-PA | 1..2691 | 17..2707 | 13455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boss-RA | 3013 | CG8285-RA | 173..2863 | 17..2707 | 13455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25965018..25966479 | 988..2449 | 7310 | 100 | Plus |
| 3R | 32079331 | 3R | 25963918..25964390 | 68..540 | 2365 | 100 | Plus |
| 3R | 32079331 | 3R | 25964448..25964898 | 539..989 | 2255 | 100 | Plus |
| 3R | 32079331 | 3R | 25966537..25966798 | 2446..2707 | 1310 | 100 | Plus |
| 3R | 32079331 | 3R | 25963564..25963615 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:48:54 has no hits.
BS30212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:17 Download gff for
BS30212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 173..2863 | 17..2707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:16 Download gff for
BS30212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 173..2863 | 17..2707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:25 Download gff for
BS30212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 173..2863 | 17..2707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:25 Download gff for
BS30212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25963564..25963615 | 17..68 | 100 | -> | Plus |
| 3R | 25963919..25964389 | 69..539 | 100 | -> | Plus |
| 3R | 25964449..25964898 | 540..989 | 100 | -> | Plus |
| 3R | 25965020..25966479 | 990..2449 | 100 | -> | Plus |
| 3R | 25966541..25966798 | 2450..2707 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:16 Download gff for
BS30212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21792263..21792520 | 2450..2707 | 100 | | Plus |
| arm_3R | 21789286..21789337 | 17..68 | 100 | -> | Plus |
| arm_3R | 21789641..21790111 | 69..539 | 100 | -> | Plus |
| arm_3R | 21790171..21790620 | 540..989 | 100 | -> | Plus |
| arm_3R | 21790742..21792201 | 990..2449 | 100 | -> | Plus |
BS30212.pep Sequence
Translation from 16 to 2706
> BS30212.pep
MKVMDALQSGRRKPLPVALLCILVTVFCVLECHGADLTSPTKKSAPLRIT
KPQPTSQQAKPISITTRAPTTVASTTDDEVSSSVDGQLAPLISSTTEGPS
SGTTASLVPEICLNGLQLTVNSADEGTVIRKQEEFVKILEGDVVLSVLTK
DPDSALFVINRVNQANLIMADFEIGIRAISIDNASLAENLLIQEVQFLQQ
CTTYSMGIFVDWELYKQLESVIKDLEYNIWPIPGTRAHLFPKVAHLLHQM
PWGEKIASVEIATETLEMYNEFMEAARQEHMCLMHFKSDDNVYIMFGNKL
ASHFKENGTLFSVPTDRTDDEFLADLPNRAFVLMENEIDLSTAVELDATP
TALDEILIGKSVLPSRVLSFAGSIIDLMNWLRGSLSKHCKRGEEHDLYVL
ESCFNFLNFIEDWRTSEYRQAHDTAEILSLLLMRKLGTAMNFQMYQKKVL
TLDKITGESRTELREIASQNFVTNVTTYYHYNRDNHTSLELKTKFGQVFN
CQYSAGDNRRYPFLFDGESVMFWRIKMDTWVATGLTAAILGLIATLAILV
FIVVRISLGDVFEGNPTTSILLLLSLILVFCSFVPYSIEYVGEQRNSHVT
FEDAQTLNTLCAVRVFIMTLVYCFVFSLLLCRAVMLASIGSEGGFLSHVN
GYIQAVICAFSVVAQVGMSVQLLVVMHVASETVSCENIYYGRWLWGLLAY
DFALLCCVGALIPSIYRSQRNYREGILIVIGSVLIMVIWVAWIALSLFGD
EWRDAAIPLGLQASGWAVLVGILIPRTFLIVRGIERSDIAQALPSLTSLA
FAQNNQYSSEQSVYECVNPAMRHCSQDEVNHQSPSEIPTLPLRGGGPRRQ
QFFANLRQANANINPQRPPPRPQQSPSRSSVSSLPPSPDHNKITRF*
BS30212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boss-PA | 896 | CG8285-PA | 1..896 | 1..896 | 4610 | 100 | Plus |
