BS30258.complete Sequence
5576 bp assembled on 2012-10-29
GenBank Submission: KX800556
> BS30258.complete
GAAGTTATCAGTCGACATGAACTCCAAGGACAAGTCCAAGTTCAAGTTGT
TCCTCAAATCGCTGCCGGCAGGTTACGTGGGCGAGCGGACCCTGCGGCCG
GAGTTTGAGAGGGAACTGCGTCCGGAGCAGCCGGTGGCCCAGCGCTGCCG
GATGCTGAAAGAGCTGGGCGACACGCAGCTGCACAACTTCAATCTGGACG
AGTCCGCCATCACCATTCTGTTCAATCTCACCAACGATCTCATCGTGCCC
AACAAGCCGGCAGAAACGCGGCAGATTGCCTTGAGCTTCTATAAACGGCT
CATTCACACACAGTACAAGAACCTGACCATCATGCGGGAGAAGTTCTTCC
TGGTCATCCAGAACCACGAAGCCCGCGAAGATCTGCGTCACCTTCTTGAG
CTGCTCGACACCCTCACCGACAATGGGAAGGATATCACAAACTTCGAGGA
GAAGATTGGCAAGTTTATGCTGCTCTGGATCCCAGCCATTACGGAGGCCA
ATCTGCTTACCCCCTACCTTGACATTCTGGTCAACCTGATCAAGTTCAAT
GCGGCGCATCTGGACAAAGACATCCTTGTGGGCATCGTGCAGAACGCTTG
CGATCTGAGCTGTAGCGTTACCGTAAACGAAATCGGTCTGCAGTGCCTCA
CAATTCTGGAGATGGTCATCGGGTACACCATCTTCCCAAGCGAACCGCTG
CCGCAGTGCATCACCACCTTGTGCCGGACTGTGAATCATGCTCCTTACTG
CCCGTCTTCTTTCAAGATCATGAAGAACCTCTTGGGCACCCAGTTGGGAT
ACCATTCCATGAAGATGATGTGCAGTATCCTCAACGATCGAGCTCTTTAC
GATGATGCCCACCTGTTGCGTGGGGCCGTGTTCCATCTAAACATGAACAT
CTTTGGCTCGAACATTATTTTCCAGGTTTCGCCTATGACCTATGCAACGA
ATGTGCTGACAGCCTTCCTGCGGGCACTAGACAGTCGTCAGGTGATCGTG
ACCTTCGAAGTCATCCTCAGCGTTCGCATGGTGATTACCAAGCGGCAGCT
TTCAGAGATCATTTGGGATCTGATCTGCGATATAATGTCCTCGATCGTTA
GCAATATCGAGTATTACGAAGAAGTCAATATAAACAAGGATCGTCTGCAT
CACCTGCAGATCAATTTCCACGAGAATATCGACTGCATCGAGAAGCTGTT
GCAGCAGGATAGATCCCAGATTCTGGGCAATGTGGAGCGCATCTACGATC
TCATCGAGCGAGTTGCCGACCGACGCCCAGAGGCTTCCGTTCTAGCCCTA
ATCGAGTACCGATCCCGACGGGTTACAGCAACGCGGCCAGATTGGCTTCA
GGTGCTGGCCCAGTTCGTCCGGCGCTACTACCGCATGTCCAACGTTAACG
TGCGCATTAAGACGATCGAGGCTCTAGTTCAGATTATGGATCAAAACCGT
GCCTGCTATGAAGAAGAAATCCTTAGTCGCGTGGTGCTGGTGCACCTTTC
CCATATTCATCTGGAGTCGAGTGTGCAGGTGCGAGTGGCCGTGGCCCGGG
CTCTTTCCAATTTTGCCACCCATTGCGACACGAAACGGTGCATGGATCTG
CTAGATATCCTGGAGGCGCTCATCAATCGACCCTTTGAGCACACGCGGCA
TGGATCCTCATCTGGAGAGGGTACACTTGCAGAAGTGACCTTTGGATTGG
TTAACAACGAATCCGAGATCTCGGATATTATCGCCGCAGTTGATGGTTTG
GTCAAAGTGTTTGCCATCAAGCTGCATCGTCTGCCAGGGATCCATGCTCT
TAAAATATTTAACATTCTAATGGACCACCTGGAACTGCACTACGAACGAC
CAAAGATTTTCGAGCACATAAGTGTTGTGCGCTATAAAATATTTGCTTGG
TTGCTGAAGGCCCGGGCCAACGGCTCCTACCATATTGGTTATCCGGAGGG
CAGCACCGAGGTGGTGAAATTTAGTCCATACCTGGGAATTGATTCACCAC
TGTTACCACAAGCCCACCCGACAGCGATATCCATACGACGAGTCTGCAAG
CTGATAGTGAGGTGCCTGGAACACGACACCGATTATCAGGTGTTCCAGCT
AGTCATCAGGGAACTGCCGAAGGTGCTGCAGAACAAGGCGCTGGTGCAGG
GCAATGACATCGAGGAGCTGGCCAACACGCTCCTCAAGATCAATTTGGTT
AGCAACAACAAGTTCAAGCGACCCACCGATGAGTTCCACGCCCTCGTTTT
ACCCGCCATAGCTTCATTGGTTATCTATCACGAAAGCCTGCAGCCGCAGC
AGCACTACGGAATTATAACAGCTCTCAATTCGAGGGTACTTACTGGCATT
GCCAGCGTCTGCATCAACACCATGACCATCCTTATACTAGAGATGCCGGA
GGCGTTGATGCGAAAGCTGCCGGACGTACTGCTCCAAATGAGTAAGATGT
CGGATACGAATGCGTTGGCCACTCCGGTTCTGGAATTTCTGTCGTTGCTC
ATACATCTGTCCAAGCATCTCTTCGCAAACTTCACTTCCATGCACAACAT
GTACGTGTTTGCCATCACGCTGCCGTACACCAAACCGCATCGCTACGATC
ACTATACAGTTTCCTTGGCCCACCATGTCATCGCTGGATGGTTCCTTAAG
TGTAAGCTGGAGCTGCGCAGGAACTGCGTTAACTACATCAAAAGCTCGAT
TCAGTCGAATGCCAAGATGTTGTCCAGCGACATTGTGAACCTAAACTCCT
TAAACGAGGATTCATCCAATCGCAAGCGGAGCACCAGTCTAACTGAGCGC
GGTAGTCGCAACAATGCCAATGCCTGGAACGATCTGGAGATGCGACCGCA
AATGAACAACGGTCTACGAAACTTCCACGCCGAACTGGCAGAGACGTGCT
TTGATTTCTTGGCGCGACACACTTATTCGCCTTGTCCGTCGATGCCCAAG
CGTCTTCCAGCGGCGGAATTCCTGCTGAAGGACGGCGTCTCGCAGACGTG
GCTAGTGGGCAACAACCTGGTGACCATAACCACCTCCGGCTGTCCGTCGG
CGCCCGCGCGCAGTGGGCTTTGCGAACGATGTGCCCAGCTAGGAAAGGCT
CCCAGCATTAGTCTGAACTCGAAGAGCCTCAGTGATGCAGCTCCTCCACT
TTCGCCAGAGCGGGAGAGACGATACACCAAGGTGAGCCTGCAGCACAGCA
GCGGCAACGAGTCGGCTGGCAGCACGGAGCTCACCTCCTCCTCGTCGTCG
AACTCAGCAGCCGCAGGTGGTCATCCACATCGACAGATTTCTAACAGTTC
CACGGCATCGCTAGACGCGCTTTCCCGTCGGGGGTCTAATCCCGAAGCCT
TGGGCAGTGCCTTGGGCGAGGGGGCACATACGGGGAGCAACACCTCGCTC
CTGGGAAACTCTTTGTCCCAATCCTCCGTTAGCATGAGCCCTTCGTCGGG
ATCCGTGGTGCAGCAGCCGGTTTGCGTGCGCGCCTGCACTGGCTGGGCGG
AGGTTTTGGTTCGTCGGCCCACGGGCAACGTATCGTGGATAACCCGCATT
CAGAACCCCATCACCAACGATTGCTTTGGCCAGGAGTTGCCGTTCAATAA
TGTGGTGTCGCTGTTTCTTCCCACTGCCCATGGCGGAGTTTTTGGACCTG
ACAATACCATTCAGGCCCCACCACATACGTTGGCTGATCCCGAACCAGAA
CCAGAAGCAGAGGTTAATGCAGCAACAGCTCCTCAGGCAAGTGCATTGCG
CAGCCGAATGGTTGCCAAGGCTCGTGCCCTTCAGCGACAGGAAGAAATTC
ACTCGGTCGGAGGAAATGGAAATGGCAACGGCAACGGTAATGGTAGTGGA
AATGCTCCCAGCACTGGAGGTGCTGCTGCCATACCCATTCCGCGGGTCCC
AGCATCTGGAAAACGCGGCAAGGAGGCAGCTCTTTGTGGAAGTGTGAGTG
ATGGTGAAGCCGACGATGACTCCCTGGCCTTTGAGGATGCTCAGAGTCGG
GCACGAAATCCCGTCCGACGGGTAAATTCCAGCCCAGAGATGAGTTCCAG
TTGGCGGCAGTCGTTCCTAACCAACAAACCCACGCCACTGTCCCAGGAGC
CCGTGAAAACCACCGCCGATGAACCGCAATCGCTGTTGACTTTGAAGAAG
AAGACTGTTCAGTACAGCACCAAGGATATGCGTGTGAGCTGTGAGGCCAT
TCCGGAGGAGATCGCCGGCTCCACACCACCGTCGCAGGCCGCAGCCTTGG
CCCTGCAGCCGGAAAGCGGCACCCTACCTCCCAAGCAGCATTCGGCGGAC
GATGTCAGCAGTCATGTGGCTGGAGGAAGTAACTTGCAAGCAGGAGGGTC
CACGCTAAAGCTGGGTAAACCACCGCTGTCGCCGGGGCAACCGCCTCTGC
TGGGCACTGGTCGAGTGACCAGCTTTGGTGGCACCTCTGTTCCGCAGCCC
GGTGCACTGGCAAAATCGAGCAGCAGTGGCAGCAATGGCACCAATGTTGG
AGTGATAACCTCCGATTACGACAACGGCAACAATGGAAACGGAGACATGA
TGCGAGGTCGTTCGAAAACCATTTCGGTGGTGCGTGAAGTGAATAACGGA
AATACGCGTCCGCCGCCGGCCAGCAGTTTCCGGAATTTCGGAGCCGCAAA
GCCGCCCATCAACACCAAGCTGTGCATGAACCCGAGCTTTATTTTCATGC
AACTGTACACCACTGGCCAGCTGGGAGTTACGGATGAGCCTCTAAAGGTG
GGTCCGGAAAACAGCAGCGCTGTCTCCCTTATCGATTTAGTCCCACCGTT
CGAGACGCACAAGATCGGCGTGCTGTACGTGGGCCAAGGGCAGTGCAACA
ACGAGGTGGAGATCTTGCGCAATTCGCACGGAAGTGCCAGGTATGTGGAG
TTCCTGCGTAACATCGGCACCCTGGTCAGTCTGAAGGAAGCTGAGCAGAA
CAATCTATTTATAATGCTAGATAGAAACGGAGCAGATGGCAAGTTTGCCT
ATATCTGGAAGGATGACATACTGCAGGTTACGTTCCATGTCGCTACGCTG
ATGCCCACCAATCTGCAGGATGATCCCAACTGCAACGAGAAGAAGAGCCA
CATTGGCAATGACTTTGTGAAGATCATCTACAACGAAAGCGGCGAGGAGT
ACAATCTAAACACAATATCCGGCCAATTCAACTACGCCTGCGTGATCGTT
GAGCCACTTGACCTGAACTCGAACAGGGTGTATGTGAAGGCGCGATCGGA
GATTTCGAAATTCGTGTGCCACGCAGAATACCGGATAGTGTCCGATCGCA
GTGCTCCTCTTTTGGCCCGACAGATGGCGCTGCACGCCAATCTCGCGTCG
CTAGTCTACCAAAGTGTGCAGAAAAAGCATCCGTACGCATCGAATTGGCT
AGAACGATTGCGCAAACTAAAGCGCCTGCGATCGAAGCTAATTGAGGGCC
TAAACAGCCAGCAAAAATCCGGAAGCGCCTCGAGCGGCATCGGAATCAAC
GCCTCAGCCATTGGTTCGGATATGGACGACCAGCGAGGTGACTTCATTAA
ATACACATAGAAGCTTTCTAGACCAT
BS30258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gig-RA | 5544 | CG6975-PA | 1..5544 | 17..5560 | 27705 | 100 | Plus |
| gig-RB | 5535 | CG6975-PB | 1..5535 | 17..5560 | 27535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gig-RA | 5795 | CG6975-RA | 128..5673 | 16..5561 | 27715 | 100 | Plus |
| gig-RB | 5786 | CG6975-RB | 128..5664 | 16..5561 | 27545 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20135994..20138070 | 2952..5028 | 10385 | 100 | Plus |
| 3L | 28110227 | 3L | 20133763..20134678 | 973..1888 | 4565 | 99.9 | Plus |
| 3L | 28110227 | 3L | 20134748..20135354 | 1889..2495 | 3035 | 100 | Plus |
| 3L | 28110227 | 3L | 20135678..20135934 | 2696..2952 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 20129619..20129878 | 201..460 | 1285 | 99.6 | Plus |
| 3L | 28110227 | 3L | 20133501..20133710 | 765..974 | 1050 | 100 | Plus |
| 3L | 28110227 | 3L | 20135421..20135620 | 2496..2695 | 1000 | 100 | Plus |
| 3L | 28110227 | 3L | 20130126..20130300 | 592..766 | 875 | 100 | Plus |
| 3L | 28110227 | 3L | 20138379..20138549 | 5171..5341 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 20138128..20138274 | 5025..5171 | 735 | 100 | Plus |
| 3L | 28110227 | 3L | 20129930..20130069 | 453..592 | 700 | 100 | Plus |
| 3L | 28110227 | 3L | 20129422..20129555 | 69..202 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 20138763..20138888 | 5436..5561 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 20138605..20138704 | 5342..5441 | 485 | 99 | Plus |
| 3L | 28110227 | 3L | 20129308..20129365 | 16..73 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:26 has no hits.
BS30258.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-29 14:00:04 Download gff for
BS30258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gig-RA | 128..5671 | 17..5560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:02 Download gff for
BS30258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gig-RA | 129..5672 | 17..5560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:21 Download gff for
BS30258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gig-RA | 129..5672 | 17..5560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:21 Download gff for
BS30258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20138765..20138887 | 5438..5560 | 100 | | Plus |
| 3L | 20138605..20138700 | 5342..5437 | 100 | -> | Plus |
| 3L | 20129309..20129363 | 17..71 | 100 | -> | Plus |
| 3L | 20129425..20129555 | 72..202 | 100 | -> | Plus |
| 3L | 20129621..20129872 | 203..454 | 100 | -> | Plus |
| 3L | 20129932..20130068 | 455..591 | 100 | -> | Plus |
| 3L | 20130126..20130300 | 592..766 | 100 | -> | Plus |
| 3L | 20133503..20133709 | 767..973 | 100 | -> | Plus |
| 3L | 20133764..20134678 | 974..1888 | 99 | -> | Plus |
| 3L | 20134748..20135354 | 1889..2495 | 100 | -> | Plus |
| 3L | 20135421..20135620 | 2496..2695 | 100 | -> | Plus |
| 3L | 20135678..20135934 | 2696..2952 | 100 | -> | Plus |
| 3L | 20135995..20138068 | 2953..5026 | 100 | -> | Plus |
| 3L | 20138130..20138273 | 5027..5170 | 100 | -> | Plus |
| 3L | 20138379..20138549 | 5171..5341 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:02 Download gff for
BS30258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20131865..20131987 | 5438..5560 | 100 | | Plus |
| arm_3L | 20123226..20123400 | 592..766 | 100 | -> | Plus |
| arm_3L | 20126603..20126809 | 767..973 | 100 | -> | Plus |
| arm_3L | 20131705..20131800 | 5342..5437 | 100 | -> | Plus |
| arm_3L | 20122409..20122463 | 17..71 | 100 | -> | Plus |
| arm_3L | 20122525..20122655 | 72..202 | 100 | -> | Plus |
| arm_3L | 20122721..20122972 | 203..454 | 100 | -> | Plus |
| arm_3L | 20123032..20123168 | 455..591 | 100 | -> | Plus |
| arm_3L | 20126864..20127778 | 974..1888 | 99 | -> | Plus |
| arm_3L | 20127848..20128454 | 1889..2495 | 100 | -> | Plus |
| arm_3L | 20128521..20128720 | 2496..2695 | 100 | -> | Plus |
| arm_3L | 20128778..20129034 | 2696..2952 | 100 | -> | Plus |
| arm_3L | 20129095..20131168 | 2953..5026 | 100 | -> | Plus |
| arm_3L | 20131230..20131373 | 5027..5170 | 100 | -> | Plus |
| arm_3L | 20131479..20131649 | 5171..5341 | 100 | -> | Plus |
BS30258.pep Sequence
Translation from 16 to 5559
> BS30258.pep
MNSKDKSKFKLFLKSLPAGYVGERTLRPEFERELRPEQPVAQRCRMLKEL
GDTQLHNFNLDESAITILFNLTNDLIVPNKPAETRQIALSFYKRLIHTQY
KNLTIMREKFFLVIQNHEAREDLRHLLELLDTLTDNGKDITNFEEKIGKF
MLLWIPAITEANLLTPYLDILVNLIKFNAAHLDKDILVGIVQNACDLSCS
VTVNEIGLQCLTILEMVIGYTIFPSEPLPQCITTLCRTVNHAPYCPSSFK
IMKNLLGTQLGYHSMKMMCSILNDRALYDDAHLLRGAVFHLNMNIFGSNI
IFQVSPMTYATNVLTAFLRALDSRQVIVTFEVILSVRMVITKRQLSEIIW
DLICDIMSSIVSNIEYYEEVNINKDRLHHLQINFHENIDCIEKLLQQDRS
QILGNVERIYDLIERVADRRPEASVLALIEYRSRRVTATRPDWLQVLAQF
VRRYYRMSNVNVRIKTIEALVQIMDQNRACYEEEILSRVVLVHLSHIHLE
SSVQVRVAVARALSNFATHCDTKRCMDLLDILEALINRPFEHTRHGSSSG
EGTLAEVTFGLVNNESEISDIIAAVDGLVKVFAIKLHRLPGIHALKIFNI
LMDHLELHYERPKIFEHISVVRYKIFAWLLKARANGSYHIGYPEGSTEVV
KFSPYLGIDSPLLPQAHPTAISIRRVCKLIVRCLEHDTDYQVFQLVIREL
PKVLQNKALVQGNDIEELANTLLKINLVSNNKFKRPTDEFHALVLPAIAS
LVIYHESLQPQQHYGIITALNSRVLTGIASVCINTMTILILEMPEALMRK
LPDVLLQMSKMSDTNALATPVLEFLSLLIHLSKHLFANFTSMHNMYVFAI
TLPYTKPHRYDHYTVSLAHHVIAGWFLKCKLELRRNCVNYIKSSIQSNAK
MLSSDIVNLNSLNEDSSNRKRSTSLTERGSRNNANAWNDLEMRPQMNNGL
RNFHAELAETCFDFLARHTYSPCPSMPKRLPAAEFLLKDGVSQTWLVGNN
LVTITTSGCPSAPARSGLCERCAQLGKAPSISLNSKSLSDAAPPLSPERE
RRYTKVSLQHSSGNESAGSTELTSSSSSNSAAAGGHPHRQISNSSTASLD
ALSRRGSNPEALGSALGEGAHTGSNTSLLGNSLSQSSVSMSPSSGSVVQQ
PVCVRACTGWAEVLVRRPTGNVSWITRIQNPITNDCFGQELPFNNVVSLF
LPTAHGGVFGPDNTIQAPPHTLADPEPEPEAEVNAATAPQASALRSRMVA
KARALQRQEEIHSVGGNGNGNGNGNGSGNAPSTGGAAAIPIPRVPASGKR
GKEAALCGSVSDGEADDDSLAFEDAQSRARNPVRRVNSSPEMSSSWRQSF
LTNKPTPLSQEPVKTTADEPQSLLTLKKKTVQYSTKDMRVSCEAIPEEIA
GSTPPSQAAALALQPESGTLPPKQHSADDVSSHVAGGSNLQAGGSTLKLG
KPPLSPGQPPLLGTGRVTSFGGTSVPQPGALAKSSSSGSNGTNVGVITSD
YDNGNNGNGDMMRGRSKTISVVREVNNGNTRPPPASSFRNFGAAKPPINT
KLCMNPSFIFMQLYTTGQLGVTDEPLKVGPENSSAVSLIDLVPPFETHKI
GVLYVGQGQCNNEVEILRNSHGSARYVEFLRNIGTLVSLKEAEQNNLFIM
LDRNGADGKFAYIWKDDILQVTFHVATLMPTNLQDDPNCNEKKSHIGNDF
VKIIYNESGEEYNLNTISGQFNYACVIVEPLDLNSNRVYVKARSEISKFV
CHAEYRIVSDRSAPLLARQMALHANLASLVYQSVQKKHPYASNWLERLRK
LKRLRSKLIEGLNSQQKSGSASSGIGINASAIGSDMDDQRGDFIKYT*
BS30258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gig-PA | 1847 | CG6975-PA | 1..1847 | 1..1847 | 9508 | 100 | Plus |
| gig-PB | 1844 | CG6975-PB | 1..1844 | 1..1847 | 9481 | 99.8 | Plus |
| CG5521-PA | 1958 | CG5521-PA | 1615..1795 | 1589..1775 | 200 | 32.1 | Plus |
| CG5521-PB | 1964 | CG5521-PB | 1621..1801 | 1589..1775 | 200 | 32.1 | Plus |
| RapGAP1-PE | 850 | CG44086-PE | 315..485 | 1580..1749 | 187 | 31.2 | Plus |
