BS30302.complete Sequence
1160 bp assembled on 2012-06-01
GenBank Submission: KX804239
> BS30302.complete
GAAGTTATCAGTCGACATGGAAATCAGCATTAAATGGAGCATGTGCCGCA
CTTGCCGCAAAAAAGGAACGCAATCCACGCTGCAGTCGCTCTTCGAGTCC
AATGCCCACAAGCTGTTGATCTCGTATGCCGGCACATCTGTGAAACCGGA
TGATGGACTGCCGGATCAAATTTGCACAGTCTGCTTGATGCAACTGGAGG
AGGTGGACAGATTTCTTAGCGCGTGCAAACAATCCGACGCGCACCTGAGA
AGCCTCGTTCGTCAAACTCTGTCCTCCGCATCGGCATTTGAGACGCTGGA
GGATAAGGACCAGCTTGAACAGAAAAAACGCGCCAGGAAGCAGAACATTT
CGGGGAGACTCATCGAAGAGAATCCTATTAACTTTAAGACTCAAGAGAAT
GCATTGGAAACGACCAAAGATGATGAAATCTTACCCATAAATAAATTTTC
AAGCGATTTCGTGTTCGATCTCAACGTGAATGCGGAAAACGAGAAAGACA
TACACCAGGAGGACTATACCATCAGTGATATGGATTTGGACAGGGAGATC
TCCGATCAAAATTACTCCGAAACGTATTCGCAAGAAAGCAGCGCTGCTAC
GGACAGTATTCAAGAGACAAGCGAGGATTACCATAATCTAGAGCCAAGTG
CCGACTACGTGATAGATCTAGGAGTGGCCTGCGAGCCGGACAAGTACAGA
TGCAAGATCTGCAGCAATACATACCGCTGCTTATCTCAGCTAAATGCACA
CTCGCAGGTGCACCGCAAGGAAAAGGACCACCAGTGCGAGGTTTGCCAAA
AGACATTCAGAGCCGCCTGCAACCTGAAAACACACATGCGGACGCACACG
GGCGAGAAACCTTACCAATGTTGCTACTGTTCGCGCCGTTTTGCCGACAA
CAGCACTCATCGCAAGCACGAACGTTTGCACACGAATGAAAGACCCTATG
CTTGCAACATATGTGGAAAAACATTCTCTCTGTCCTCCTCTCGTAACGCT
CACTACTACCTGCATTCGTCTGAAAAGTCTCACAAGTGTCTTATGTGTAA
AAAAGAATTTCGGCTTAAGCACCAACTTACAGCGCACGAGAAGTCTCTTG
CGCACCGTCTGATAGCTAAGGAGTACAGCGACGTGGTAGAATAGAAGCTT
TCTAGACCAT
BS30302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6808-RB | 1128 | CG6808-PB | 1..1128 | 17..1144 | 5640 | 100 | Plus |
| CG6808-RA | 1128 | CG6808-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6808-RB | 1447 | CG6808-RB | 61..1188 | 17..1144 | 5640 | 100 | Plus |
| CG6808-RA | 3138 | CG6808-RA | 1752..2879 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11622206..11622856 | 790..140 | 3255 | 100 | Minus |
| 3R | 32079331 | 3R | 11621725..11621945 | 1144..924 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 11622015..11622149 | 924..790 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 11622911..11623037 | 143..17 | 635 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hopper2 | 1593 | hopper2 HOPPER2 1593bp | 937..1030 | 968..1061 | 110 | 57.4 | Plus |
BS30302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:15 Download gff for
BS30302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2879 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:13 Download gff for
BS30302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2879 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:05 Download gff for
BS30302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6808-RA | 1752..2879 | 17..1144 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:05 Download gff for
BS30302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11621725..11621944 | 925..1144 | 100 | <- | Minus |
| 3R | 11622015..11622149 | 790..924 | 100 | <- | Minus |
| 3R | 11622207..11622856 | 140..789 | 100 | <- | Minus |
| 3R | 11622915..11623037 | 17..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:13 Download gff for
BS30302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7447447..7447666 | 925..1144 | 100 | <- | Minus |
| arm_3R | 7447737..7447871 | 790..924 | 100 | <- | Minus |
| arm_3R | 7447929..7448578 | 140..789 | 100 | <- | Minus |
| arm_3R | 7448637..7448759 | 17..139 | 100 | | Minus |
BS30302.pep Sequence
Translation from 16 to 1143
> BS30302.pep
MEISIKWSMCRTCRKKGTQSTLQSLFESNAHKLLISYAGTSVKPDDGLPD
QICTVCLMQLEEVDRFLSACKQSDAHLRSLVRQTLSSASAFETLEDKDQL
EQKKRARKQNISGRLIEENPINFKTQENALETTKDDEILPINKFSSDFVF
DLNVNAENEKDIHQEDYTISDMDLDREISDQNYSETYSQESSAATDSIQE
TSEDYHNLEPSADYVIDLGVACEPDKYRCKICSNTYRCLSQLNAHSQVHR
KEKDHQCEVCQKTFRAACNLKTHMRTHTGEKPYQCCYCSRRFADNSTHRK
HERLHTNERPYACNICGKTFSLSSSRNAHYYLHSSEKSHKCLMCKKEFRL
KHQLTAHEKSLAHRLIAKEYSDVVE*
BS30302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6808-PB | 375 | CG6808-PB | 1..375 | 1..375 | 1995 | 100 | Plus |
| CG6808-PA | 375 | CG6808-PA | 1..375 | 1..375 | 1995 | 100 | Plus |
| trem-PA | 439 | CG4413-PA | 4..410 | 2..365 | 408 | 27 | Plus |
| CG14710-PB | 415 | CG14710-PB | 10..399 | 10..364 | 398 | 29.9 | Plus |
| CG4854-PA | 319 | CG4854-PA | 12..311 | 10..360 | 386 | 28.4 | Plus |
