BS30310.complete Sequence
578 bp assembled on 2012-07-26
GenBank Submission: KX804179
> BS30310.complete
GAAGTTATCAGTCGACATGGTATTGGATGGGGTGCGTCTAACAATAGTGC
CGACGATTAGATTTGGCACACGCGGACCGACTATGTCGGCGGAACGTCCA
GCTGCCAGCTCCGATAATCGGCGACTTATGTGCGAGTTCTGCGGCTATCG
GACGCGCATCTATTGGAATCTGCAGATCCATCGTCGGCGACACACCGGCG
AAATGCCCTTCAGTTGCCAGCAATGCCAGGCGCGTTTCCCGGCCAGCTAT
CAGCTGAAAAGCCACTTGGAGCGGCACTTGGACGCCGGCGAGCGACGCCA
GCGGCACATTTGCACCGACTGCAACGTGGGTTTCTCCAGTTCGCGGGCCC
TGTACCATCACCGGACGCTCCACGAGGATGGGAAGCGCTTCAAGTGCTCC
CAGTGCGACAAGTCGTTCGCTCAGGCGGCGGGCTACGCCCAACACAAGCG
GATTCACCGCCAGAGGAACCAGCGAGCCACCGAAACCACGGATCTGAAGG
ATCTGCAGATCAAAAGAGTGGTTTCAAGTGTTTTTCATCGGCGCGAGTTT
AACACTGCATAAAAGCTTTCTAGACCAT
BS30310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15336-RD | 480 | CG15336-PD | 1..480 | 83..562 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15336-RD | 757 | CG15336-RD | 1..548 | 17..564 | 2725 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8147949..8148496 | 17..564 | 2725 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:46:02 has no hits.
BS30310.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:13 Download gff for
BS30310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15336-RC | 1..544 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:56 Download gff for
BS30310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15336-RD | 1..544 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:49 Download gff for
BS30310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15336-RD | 1..544 | 17..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:49 Download gff for
BS30310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8147949..8148492 | 17..560 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:56 Download gff for
BS30310.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8041982..8042525 | 17..560 | 99 | | Plus |
BS30310.pep Sequence
Translation from 16 to 561
> BS30310.pep
MVLDGVRLTIVPTIRFGTRGPTMSAERPAASSDNRRLMCEFCGYRTRIYW
NLQIHRRRHTGEMPFSCQQCQARFPASYQLKSHLERHLDAGERRQRHICT
DCNVGFSSSRALYHHRTLHEDGKRFKCSQCDKSFAQAAGYAQHKRIHRQR
NQRATETTDLKDLQIKRVVSSVFHRREFNTA*
BS30310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:10:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15336-PD | 159 | CG15336-PD | 1..159 | 23..181 | 864 | 100 | Plus |
| CG10959-PB | 441 | CG10959-PB | 307..437 | 32..165 | 280 | 40.7 | Plus |
| CG10959-PA | 443 | CG10959-PA | 309..439 | 32..165 | 280 | 40.7 | Plus |
| CG2129-PA | 465 | CG2129-PA | 347..459 | 32..148 | 280 | 42.7 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 1259..1375 | 27..147 | 253 | 41.3 | Plus |
