BS30317.complete Sequence
1292 bp assembled on 2012-06-01
GenBank Submission: KX803189
> BS30317.complete
GAAGTTATCAGTCGACATGCTGGCACAAATGGTAGAGACAAATTCCCCGC
CGGCGGGTTACACCCTCAAAAGGTCGCCCAGCGATCTCGGCGAGCAGCAG
CAGCCTCCAAGGCAGATCTCGCGATCTCCTGGCAACACGGCCGCCTATCA
CCTGACCACCGCCATGCTCCTGAACTCGCAGCAATGCGGCTACTTGGGCC
AGCGATTGCAGTCGGTCCTCCAGCAGCAGCACGCCCAACACCAGCAGTCC
CAAAGTCAAACTCCGTCCTCCGATGATGGCAGCCAGTCAGGTGTCACCAT
TCTGGAAGAGGAGAGAAGAGGAGGAGCCGCTGCCGCGTCTCTCTTCACTA
TTGACAGCATTTTGGGCTCTCGCCAACAGGGTGGAGGCACCGCTCCAAGC
CAAGGCAGCCACATCAGCAGCAATGGCAACCAAAATGGACTCACCTCGAA
TGGCATCAGTTTGGGTCTGAAAAGAAGTGGCGCCGAGTCCCCAGCCTCGC
CAAATTCAAACTCCAGTTCTAGCGCAGCCGCCAGTCCCATCCGACCGCAG
AGGGTTCCTGCCATGCTGCAGCATCCTGGCCTGCATCTGGGTCACTTGGC
GGCTGCAGCGGCGAGCGGTTTTGCCGCCTCTCCCTCGGATTTTTTGGTGG
CGTACCCCAACTTCTATCCAAACTACATGCACGCTGCTGCGGTGGCGCAT
GTGGCCGCTGCTCAGATGCAGGCACATGTGAGTGGAGCAGCCGCTGGATT
GTCGGGTCACGGGCACCATCCGCACCACCCCCATGGGCACCCCCACCATC
CACATCTGGGCGCACACCACCACGGACAGCACCACCTCAGCCATCTGGGT
CATGGACCTCCGCCGAAGAGGAAGCGTCGCCATCGCACCATCTTCACGGA
GGAGCAGTTGGAGCAACTGGAGGCCACCTTCGACAAAACACACTACCCAG
ATGTGGTGCTCCGGGAGCAACTTGCCCTCAAGGTGGATCTCAAAGAAGAA
CGAGTTGAGGTGTGGTTCAAGAACCGGCGGGCCAAGTGGCGCAAGCAAAA
GCGCGAGGAGCAGGAGCGGCTGCGGAAGCTGCAGGAGGAGCAATGCGGCA
GCACCACCAACGGCACCACCAACAGCAGCAGCGGCACCACCAGCTCCACC
GGCAACGGATCCCTAACCGTGAAGTGCCCCGGATCCGATCACTACTCCGC
GCAGCTAGTGCACATCAAGAGCGATCCCAATGGGTACAGCGATGCCGACG
AGTCATCCGACCTGGAAGTGGCCTAAAAGCTTTCTAGACCAT
BS30317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gsc-RD | 1422 | CG2851-PD | 163..1422 | 17..1276 | 6270 | 99.8 | Plus |
| Gsc-RC | 1248 | CG2851-PC | 1..1248 | 29..1276 | 6210 | 99.8 | Plus |
| Pph13-RA | 1074 | CG2819-PA | 164..203 | 1008..1047 | 185 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gsc-RD | 2362 | CG2851-RD | 468..1727 | 17..1276 | 6270 | 99.8 | Plus |
| Gsc-RC | 2362 | CG2851-RC | 468..1727 | 17..1276 | 6270 | 99.8 | Plus |
| Pph13-RA | 1880 | CG2819-RA | 671..710 | 1008..1047 | 185 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 593588..594218 | 647..17 | 3125 | 99.7 | Minus |
| 2L | 23513712 | 2L | 592269..592634 | 1012..647 | 1830 | 100 | Minus |
| 2L | 23513712 | 2L | 584179..584447 | 1276..1008 | 1345 | 100 | Minus |
| 2L | 23513712 | 2L | 578277..578316 | 1008..1047 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:31:33 has no hits.
BS30317.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:08 Download gff for
BS30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gsc-RB | 199..1456 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:56 Download gff for
BS30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gsc-RC | 468..1725 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:48 Download gff for
BS30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gsc-RC | 468..1725 | 17..1274 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:48 Download gff for
BS30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 584181..584445 | 1010..1274 | 100 | <- | Minus |
| 2L | 592272..592633 | 648..1009 | 100 | <- | Minus |
| 2L | 593588..594218 | 17..647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:56 Download gff for
BS30317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 592272..592633 | 648..1009 | 100 | <- | Minus |
| arm_2L | 584181..584445 | 1010..1274 | 100 | <- | Minus |
| arm_2L | 593588..594218 | 17..647 | 99 | | Minus |
BS30317.pep Sequence
Translation from 16 to 1275
> BS30317.pep
MLAQMVETNSPPAGYTLKRSPSDLGEQQQPPRQISRSPGNTAAYHLTTAM
LLNSQQCGYLGQRLQSVLQQQHAQHQQSQSQTPSSDDGSQSGVTILEEER
RGGAAAASLFTIDSILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLG
LKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAAS
GFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGH
HPHHPHGHPHHPHLGAHHHGQHHLSHLGHGPPPKRKRRHRTIFTEEQLEQ
LEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKREEQE
RLRKLQEEQCGSTTNGTTNSSSGTTSSTGNGSLTVKCPGSDHYSAQLVHI
KSDPNGYSDADESSDLEVA*
BS30317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gsc-PD | 473 | CG2851-PD | 55..473 | 1..419 | 2205 | 100 | Plus |
| Gsc-PC | 415 | CG2851-PC | 1..415 | 5..419 | 2187 | 100 | Plus |
| Vsx1-PB | 837 | CG4136-PB | 134..455 | 38..346 | 316 | 31.8 | Plus |
| Vsx1-PA | 837 | CG4136-PA | 134..455 | 38..346 | 316 | 31.8 | Plus |
| Vsx2-PA | 640 | CG33980-PA | 57..290 | 154..346 | 284 | 35.2 | Plus |
