BS30318.complete Sequence
1430 bp assembled on 2012-06-01
GenBank Submission: KX803293
> BS30318.complete
GAAGTTATCAGTCGACATGCACACGACAGCTCAACTGGATAGTCTGGAGC
AGAAGCGCTCGGCCAGCCTGATCTTCCGAATTGAGCAACTCCTGCCGAGC
ACCAGTATCACACCGACCAGCATGACCACTTCATCGACAGAAACCACATT
GACGGCCACCACGAGCACCGCAAGTCCGGCCAAGCGGATGAGGATGAGCA
ATCCACGACCAGGTGTTTACGCCTCGCAGTACACGCCCAAGGATACCTGC
TCCATGGCCATTCCCACGTCGGCTCTCCTGGGATCTACGGTCATGCCCAC
GGATGGCAGCCGCTCCCACTGCCAGCTGTCCAATGGCGAACTAATCGTAT
CCGGTTCACTGTTGCGGCAGATCAAACTCTCCGAGGATGTGTATAGCTTC
AATGCCATCTTCGAACTGCATGGTGGACAAGTGCGCGTCCGTTTGGTCAG
GGATGTAGCCCGGGAGGACGAGATCGTGGCCTGGTTCGGTGAGGAGTTGG
TTCTCCTTATGGGCATTCCCTTCCTGACGCCCCTAAACATTCAAGGAAAC
AGTCGCTACATGTGTCACCTCTGCCATTTGACTTTCGAGACACCCCACCC
GCTGAAGATCCATTTGGCTCTGGGTTGCGGTCGCAGTGCCATGGACATCC
TTTGGATGCGACTTCACTACGCGCTGAAGGCGGCAGCAAGAAGTCACACA
GAAACCCAGCACTCACCCATTCCGGCGACCTCGTCCACGTCTTCGGCCTC
GCCCACCCACTCGCCACCGCCGCAGATGCCACCACGGTTCTCCGCCTTCC
GTCCCATTGCAGCACTTACCCAGAGTTTGCCCATGGTACCCGTAACCACA
GCAGCAACGCCTCTATCCTACCTGCCCTCCATGTCGATGGCCACTGCACC
GTTGTCGACGAATCCAATGAATGCAGCTGCCCAGATCGAGGCCATAGTCA
GCAATATGGGTGCCTCCAAGCAGGGTCATCTGTGCATCTACTGCGGCAAG
GTGTACTCCCGGAAATATGGCCTGAAGATCCACATACGCACCCACACCGG
ATTCAAGCCGCTGAAGTGCAAGTTCTGCCTGAGACCTTTTGGCGATCCCA
GCAATCTCAACAAGCATGTGAGGCTGCATCTGCAGACGCATCCGAGTAGT
TCCGCGGGAGTCGCCGATGGTGGAGCAAGTGGTGCCGACATGGACGGCGA
TGTGGACATCGAAGGGGAGACGGATGCTGACTACCAGTGCCACGTGTGCC
ATAAATCCTTTCCACGGCGCAGGGATCTACAGCGACACATGGAGACCCGG
CATGGTGGACACCATTCCCATTCCCATTCCGAGTCCCGGTCCAGCTCCAC
CAGCACCTCCAGTACAACCACAATGACCGCAACGGTGACCACATCTACTT
CGAAATCCAGCTAGAAGCTTTCTAGACCAT
BS30318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13296-RA | 1398 | CG13296-PA | 1..1398 | 17..1414 | 6915 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13296-RA | 1428 | CG13296-RA | 31..1428 | 17..1414 | 6915 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6163812..6164682 | 544..1414 | 4280 | 99.4 | Plus |
| 3L | 28110227 | 3L | 6163157..6163686 | 17..546 | 2650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:31:37 has no hits.
BS30318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:09 Download gff for
BS30318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13296-RA | 1..1398 | 17..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:58 Download gff for
BS30318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13296-RA | 1..1398 | 17..1414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:49 Download gff for
BS30318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13296-RA | 31..1428 | 17..1414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:49 Download gff for
BS30318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6163157..6163685 | 17..545 | 100 | -> | Plus |
| 3L | 6163814..6164682 | 546..1414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:58 Download gff for
BS30318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6156257..6156785 | 17..545 | 100 | -> | Plus |
| arm_3L | 6156914..6157782 | 546..1414 | 99 | | Plus |
BS30318.pep Sequence
Translation from 16 to 1413
> BS30318.pep
MHTTAQLDSLEQKRSASLIFRIEQLLPSTSITPTSMTTSSTETTLTATTS
TASPAKRMRMSNPRPGVYASQYTPKDTCSMAIPTSALLGSTVMPTDGSRS
HCQLSNGELIVSGSLLRQIKLSEDVYSFNAIFELHGGQVRVRLVRDVARE
DEIVAWFGEELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHL
ALGCGRSAMDILWMRLHYALKAAARSHTETQHSPIPATSSTSSASPTHSP
PPQMPPRFSAFRPIAALTQSLPMVPVTTAATPLSYLPSMSMATAPLSTNP
MNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLKIHIRTHTGFKPLK
CKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEG
ETDADYQCHVCHKSFPRRRDLQRHMETRHGGHHSHSHSESRSSSTSTSST
TTMTATVTTSTSKSS*
BS30318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13296-PA | 465 | CG13296-PA | 1..465 | 1..465 | 2426 | 100 | Plus |
| CG17328-PB | 382 | CG17328-PB | 146..259 | 323..437 | 179 | 32.2 | Plus |
| CG17328-PA | 413 | CG17328-PA | 177..290 | 323..437 | 179 | 32.2 | Plus |
| sna-PA | 390 | CG3956-PA | 120..380 | 192..424 | 178 | 26.6 | Plus |
| CG14711-PA | 377 | CG14711-PA | 217..334 | 312..430 | 173 | 32.2 | Plus |
