BS30322.complete Sequence
1154 bp assembled on 2012-06-01
GenBank Submission: KX801667
> BS30322.complete
GAAGTTATCAGTCGACATGAACCAGCTGTGCAAAGTGTGCGGCGAGCCGG
CGGCTGGTTTTCATTTTGGGGCATTTACATGTGAAGGCTGCAAGTCCTTT
TTCGGTCGTACTTACAACAACATAGCGGCGATTGCAGGATGTAAGCACAA
CGGAGATTGCGTGATCAACAAGAAGAACCGCACGGCCTGCAAGGCGTGCC
GCCTGCGCAAGTGCCTCCTGGTCGGGATGTCCAAGAGTGGCTCCCGCTAC
GGTCGCCGGTCCAACTGGTTCAAGATCCATTGTCTGTTGCAGGAGCAGCA
GACGACGTCGGGCCTCGGTGGAGGGAGCTCCGTGGGAAGCGGATCAGGAG
GCGGAGTGAGCAGTGCGAGTCTGGAGCAGCTGGCGCGATTACAGCAGGCC
AGTAACCAGGCGCGGCAAACCTATCAGGACAAGACCAATCCCTGCATCAA
GTCAGCCACGGCCACGACATCACCCAGAATCGAGGGTGCGGCAGTGGGCA
CGGGAATCGGTGGCGGCGCCTCTCCGTCATTCCTGCAAGCGGCAAAGCTC
CACCACCAGCGGCAGTTAAAGCTCGATTCCCGCCTCAGCAACACTCCCAG
CGATTCAGGAGCATCTTCGGCGGGAGATCCCAACGAAGATGGTGTCACCA
GCGTCCTCGGTGGCCAGATCGCAACACCATCATCCACCAACGCCACCAGC
CTGCCCAAGCTGGATCTGCGGCATCCGAACTTTCCGGCCACCTCGGAGCC
GGATGCTGATATGCAGCGGCAGCGCCACCAGGAGCTGCTCGAGATCTTTC
GCAGTCACTCGGAGCCGCTGTACAGTTCATTTGCCCCATTCAGCCACCTG
CCACCTGTGCTGCTCGCCGCCGGAGTTCCACAGCTGCCCATTTTCAAGGA
TCAGTTTAAGGCTGAGCTGCTGTTTCCGACGACCAGCAGTCCTGAGCTCG
AAGAGCCCATCGATCTGTCCTTTAGATCCCGAGCAGACCCTGCCAGTCCG
ATGGCCCACAACTCCAATAGTCCGAGTTTAAGTGAGCCTGCTGCGGCGAG
CCACTGTTTGGGGGAATCGACAAACTTCGTCCGAAAGTCCACGCCCCTTG
ATCTCACCCTGGTGAGGTCACAAACGTTGACAGGCTAAAAGCTTTCTAGA
CCAT
BS30322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eg-RA | 1122 | CG7383-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
| eg-RB | 1122 | CG7383-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
| eg-RC | 1068 | CG7383-PC | 23..1068 | 93..1138 | 5230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eg-RA | 1800 | CG7383-RA | 400..1521 | 17..1138 | 5610 | 100 | Plus |
| eg-RB | 1503 | CG7383-RB | 103..1224 | 17..1138 | 5610 | 100 | Plus |
| eg-RC | 1454 | CG7383-RC | 130..1175 | 93..1138 | 5230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21816276..21817321 | 93..1138 | 5230 | 100 | Plus |
| 3L | 28110227 | 3L | 20599774..20599982 | 301..93 | 475 | 81.8 | Minus |
| 3L | 28110227 | 3L | 21814779..21814856 | 17..94 | 390 | 100 | Plus |
| 3L | 28110227 | 3L | 20693845..20693978 | 297..164 | 355 | 84.3 | Minus |
| 3L | 28110227 | 3L | 20602193..20602270 | 94..17 | 195 | 83.3 | Minus |
| 3L | 28110227 | 3L | 20694263..20694340 | 94..17 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:32:22 has no hits.
BS30322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:18 Download gff for
BS30322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eg-RA | 400..1519 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:19 Download gff for
BS30322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eg-RB | 103..1222 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:10 Download gff for
BS30322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eg-RB | 103..1222 | 17..1136 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:10 Download gff for
BS30322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21814779..21814856 | 17..94 | 100 | -> | Plus |
| 3L | 21816278..21817319 | 95..1136 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:19 Download gff for
BS30322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21807879..21807956 | 17..94 | 100 | -> | Plus |
| arm_3L | 21809378..21810419 | 95..1136 | 100 | | Plus |
BS30322.pep Sequence
Translation from 16 to 1137
> BS30322.pep
MNQLCKVCGEPAAGFHFGAFTCEGCKSFFGRTYNNIAAIAGCKHNGDCVI
NKKNRTACKACRLRKCLLVGMSKSGSRYGRRSNWFKIHCLLQEQQTTSGL
GGGSSVGSGSGGGVSSASLEQLARLQQASNQARQTYQDKTNPCIKSATAT
TSPRIEGAAVGTGIGGGASPSFLQAAKLHHQRQLKLDSRLSNTPSDSGAS
SAGDPNEDGVTSVLGGQIATPSSTNATSLPKLDLRHPNFPATSEPDADMQ
RQRHQELLEIFRSHSEPLYSSFAPFSHLPPVLLAAGVPQLPIFKDQFKAE
LLFPTTSSPELEEPIDLSFRSRADPASPMAHNSNSPSLSEPAAASHCLGE
STNFVRKSTPLDLTLVRSQTLTG*
BS30322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eg-PA | 373 | CG7383-PA | 1..373 | 1..373 | 1947 | 100 | Plus |
| eg-PB | 373 | CG7383-PB | 1..373 | 1..373 | 1947 | 100 | Plus |
| eg-PC | 355 | CG7383-PC | 8..355 | 26..373 | 1794 | 99.7 | Plus |
| knrl-PB | 647 | CG4761-PB | 10..134 | 1..114 | 516 | 74.4 | Plus |
| knrl-PA | 647 | CG4761-PA | 10..134 | 1..114 | 516 | 74.4 | Plus |
