BS30328.complete Sequence
1028 bp assembled on 2012-06-01
GenBank Submission: KX804816
> BS30328.complete
GAAGTTATCAGTCGACATGGATTCCGTGATCAAAAGGTTTAAGGCGCTAA
ACCACGGGGATGACTATGAGGAAAATGACGCACGATTTGATGGGGTCAAG
TTGAAGGAAGGGACGTCAGCTAAACTATCCAGTCTGGATAAACTTTTTGA
AGAACTCAAAATAAGTAAAGAAAGTTCAGCAAAAGAAGATTTGGTCACGG
AGCCGATGAAGACGGAGAGTTACCTTTATAAGGATTACTTTAACAAGAGT
CCCATCGATTTCCCGTGGGAGAAGGCCTATGAGAAGGGCAGTTCCCTGGG
ACCCGACTTTTACATCGACTATGAGAACATCTTCGACAATGTGGCCAATC
TTGCCGAAATAGAAGAAAAACTGGAATTGCACTTCAGACCCTTTACCTGT
GTAATGGACTTCAACTGCCGTTTCAGTATGTACGAACTGTGCCTGCTGTT
GGCCGAATCCCGATTCGATCCAAGTAGTCATCCCTCCGTGGTCGTGAAGA
TCACCCATCCCTCTGCCCAGGTGAAGATCCATGCGGGTGGAAAGATTTCC
TCCACCGCCTTGAACGCCGATTCTGCCAGAAGTGGTCTGTTCAAGGTGAT
CAGGATCCTGCAGGATCTCGACTATAAGGTGGACATCATGAACTTCAGCA
AGAACATCGTGAATGCCTCCTTCAGCATGCCATTCAAAATCGATTTGGAT
CTGATGAGCCGCCGCCATGTGGTCGAGGTGGCCCAGAACAGGAGCCGGCG
ACCCTTTATCACATACACCACCGAGAATTTGGGCGTGAGATTTGCCGTCT
TTCCCACAGGATTCGTTTTGGTCCTTCACTCGACCAGTCACTGCGAGACA
CGAGAGGCTATAGCCAACTTCCTGCCGATCCTGGCCAAACTCAAGAATGG
ATATCCCACGGCAGAGGAGAAACTTGGACAACTGGTAGGGGATATTTCCT
ACAAGTTGTTTTGGGAAAAGCAATTGGAAGACGACAAGGAGGGCATGTTG
CTTTACTCTTAAAAGCTTTCTAGACCAT
BS30328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9879-RA | 996 | CG9879-PA | 1..996 | 17..1012 | 4965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9879-RA | 1147 | CG9879-RA | 82..1077 | 17..1012 | 4965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2665256..2666195 | 73..1012 | 4685 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2665143..2665198 | 17..72 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:31:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rooA | 7621 | rooA ROOA_LTR 7621bp | 6973..7035 | 690..629 | 114 | 66.7 | Minus |
BS30328.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:13 Download gff for
BS30328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9879-RA | 34..1027 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:05 Download gff for
BS30328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9879-RA | 82..1075 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:55 Download gff for
BS30328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9879-RA | 82..1075 | 17..1010 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:55 Download gff for
BS30328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2665143..2665198 | 17..72 | 100 | -> | Plus |
| 2L | 2665256..2666193 | 73..1010 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:05 Download gff for
BS30328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2665143..2665198 | 17..72 | 100 | -> | Plus |
| arm_2L | 2665256..2666193 | 73..1010 | 99 | | Plus |
BS30328.pep Sequence
Translation from 16 to 1011
> BS30328.pep
MDSVIKRFKALNHGDDYEENDARFDGVKLKEGTSAKLSSLDKLFEELKIS
KESSAKEDLVTEPMKTESYLYKDYFNKSPIDFPWEKAYEKGSSLGPDFYI
DYENIFDNVANLAEIEEKLELHFRPFTCVMDFNCRFSMYELCLLLAESRF
DPSSHPSVVVKITHPSAQVKIHAGGKISSTALNADSARSGLFKVIRILQD
LDYKVDIMNFSKNIVNASFSMPFKIDLDLMSRRHVVEVAQNRSRRPFITY
TTENLGVRFAVFPTGFVLVLHSTSHCETREAIANFLPILAKLKNGYPTAE
EKLGQLVGDISYKLFWEKQLEDDKEGMLLYS*
BS30328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9879-PA | 331 | CG9879-PA | 1..331 | 1..331 | 1711 | 100 | Plus |
| CG15398-PB | 305 | CG15398-PB | 77..296 | 101..321 | 335 | 33.9 | Plus |
