Clone BS30406 Report

Search the DGRC for BS30406

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:304
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptNeu2-RA
Protein status:BS30406.pep: gold
Sequenced Size:1181

Clone Sequence Records

BS30406.complete Sequence

1181 bp assembled on 2012-06-01

GenBank Submission: KX801613

> BS30406.complete
GAAGTTATCAGTCGACATGGCCAGTGTTTTCGATGAGTCTCATGAACCGG
GCCTATCCATTGCGTACATAATATACAAGTGCACCGGCTGGCAAGTTGAG
AAGCACGATCCACTGTCCAACACCATATGCAAGTCCTGTCTGGAGGATGC
GCAGAATGCATTCGATATCATAGAAACGTACGAGAGAAGTCACCAGTTTT
ACCGCTTCCTCAAGGATGTACGGGAGGAGGAGAGTGAAAATGATGGATCC
GGATGCTCAGAAGAAGTGGAGGCAGCTGAGAGGGATCTCCAGGATGGTGC
CGACGACGTCGATTCCGGCAATGAACCTGATATTAACGAATGTGATATCA
AGGCCAAGGAGAAACCAGGCTTTAGCTGTTCTCACTGCCCTAAATCTTTT
CAAGTAAAATCAAATCTGAAGGTACACATGCGTTCACACACAGGAGAACG
TCCCTTCACGTGTTCCCTCTGCCCCAAGTCCTTTGGCTATAGCTCTGGTC
TTCAGAATCACATGCGAACCCACACAGGAGAACGACCCTTCCAGTGCTCG
CATTGCCCAAGGTCCTTTACAGCTGGGCACCACCTCAAGGCCCACATACA
GATGCACGAAAGAAGAGGATCGTTAAGGTGCCCATACTGCCAAAAGTGCT
TTCTAACTTCTTTAATTCTCAAGCAGCATTTGGCCACGCACACTGATGAA
ACGCAGTTCAAGTGTTCCCAGTGCTCGAAGTCCTTTCAAGTCGAACATGA
ACTTTGGATGCACATGCGGGTGCACCAAGAACGCCTCTTTACTTGTGGCC
ATTGCTCAAAGGACTTTGCGCTACATGCGTATCTCAAGCGACACCTGTCA
AGGAACGCGAGATGCTCTCAAAGCTCAAAAGCATCTGCTCACAAAACACT
AGGCCACTCAAAGGCACTTAAGTGTGGTAAGTGCCCAAAAACTTTCACTG
ACCGTTCGGCTCTGTCCACTCACTTGAAATCACACACCAAAAATAAGCCA
TTGCTCGAAGGTCCTTGCAAATCTTCAGGATCTAAGCCGGCACATAGTAA
CGCACAAAGAAAACCGTTTAAGTGTTCCAGCTGCCCAAGGACTTTTTCGC
GGAAATCCGCACTGCTAACACACTTGCAAACCCACACAGGAAAACTGGGC
ACAAATCGCATGTAGAAGCTTTCTAGACCAT

BS30406.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-RA 1149 CG7204-PA 1..1149 17..1165 5730 99.9 Plus
Neu2-RB 927 CG7204-PB 1..910 17..926 4535 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-RA 1308 CG7204-RA 157..1308 17..1168 5745 99.9 Plus
Neu2-RB 1126 CG7204-RB 157..1066 17..926 4535 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21488850..21490001 1168..17 5745 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 11:32:33 has no hits.

BS30406.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:20 Download gff for BS30406.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 13..1161 17..1165 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:26 Download gff for BS30406.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 157..1305 17..1165 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:15 Download gff for BS30406.complete
Subject Subject Range Query Range Percent Splice Strand
Neu2-RA 157..1305 17..1165 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:15 Download gff for BS30406.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21488853..21490001 17..1165 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:26 Download gff for BS30406.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21481953..21483101 17..1165 99   Minus

BS30406.pep Sequence

Translation from 16 to 1164

> BS30406.pep
MASVFDESHEPGLSIAYIIYKCTGWQVEKHDPLSNTICKSCLEDAQNAFD
IIETYERSHQFYRFLKDVREEESENDGSGCSEEVEAAERDLQDGADDVDS
GNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRSHTGERPFTCS
LCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQMHERR
GSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELWMHM
RVHQERLFTCGHCSKDFALHAYLKRHLSRNARCSQSSKASAHKTLGHSKA
LKCGKCPKTFTDRSALSTHLKSHTKNKPLLEGPCKSSGSKPAHSNAQRKP
FKCSSCPRTFSRKSALLTHLQTHTGKLGTNRM*

BS30406.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Neu2-PA 382 CG7204-PA 1..382 1..382 2100 100 Plus
Neu2-PB 308 CG7204-PB 1..303 1..303 1673 100 Plus
CG15436-PA 346 CG15436-PA 15..341 1..320 527 34 Plus
CG5245-PA 501 CG5245-PA 103..385 111..376 482 35.4 Plus
CG5245-PA 501 CG5245-PA 77..357 114..376 478 34.8 Plus
CG5245-PA 501 CG5245-PA 216..492 114..371 461 35.3 Plus
crol-PG 878 CG14938-PG 302..581 115..374 452 34.2 Plus
CG5245-PA 501 CG5245-PA 58..327 130..374 446 35.8 Plus
CG5245-PA 501 CG5245-PA 332..493 119..279 359 42.6 Plus
CG15436-PA 346 CG15436-PA 126..319 175..376 311 31.6 Plus
CG5245-PA 501 CG5245-PA 75..273 196..376 290 32.5 Plus
Neu2-PB 308 CG7204-PB 111..259 194..379 214 30.5 Plus