BS30413.complete Sequence
1070 bp assembled on 2012-06-01
GenBank Submission: KX801009
> BS30413.complete
GAAGTTATCAGTCGACATGTTTGAAATGAAAAAGCCTTCGCAATGCCATT
TGTGCGCCTCGTGTTTCTGTCACCTGAATCCCACGATAATTTTTTGCCTG
GAAGTTCTGGCCAAGATCAAGGATCTCACTGGAATATGGTTAGAACAGAA
TGAACGCCAGCCGCGTCATATTTGCCCATCTTGTTTAAATGACTTGAACA
CATCGATTAAGTTAAAGAAGCGCATTCAACGAGTTCACAATGAAGCAACG
CTGAGGCGGGAATCTGGGCTTGATGAGGATCTAGAAAGCACTGTATCCGA
TATAGAGCCAGAAGGGGATTCCAGTGACTTGGAATCGGAGGAATCATATG
ATTCAGAAAACTATCCATTTGACAAAAAAGCAGAGGAATCCGATATTGAT
TTAAATCTCGCCCATGAGGATAGGAGAAACGAACCACATAATCCTTATGA
TTCGGAAACCCCCTTAATATTTAAGCATAAAAATCCATTAATTGAGACTC
CTTCATTTGCAAATGAAAACTTGCCTAACAAAGTCGATGCAAAAAGCCCA
AAAAAGGGAAACTTTATACAAATTGGAACCGATCTGAGACTACTTACAAC
GTATCCCTCTATTAAGGTAGTAAAGCCCCTTGCATTAGCTCCAGAAGATG
TGGCAGCTGAGAATGTACCCCCTGCAAAAAGGACAGCTCGGAAAATGCAA
TCCCTGGTGTGCCCTAAGTGCGGAAGGGTCTTTAAGACTCCATACAACCT
AAAGACGCATATGGTGCGCCACACGGGTGAGAAGAACTTTCCATGCACGT
TCTGCGACAAGCGGTTCGTCACCAAGTATCTGGCTCGTCTACACGAACGA
GTGCGCCACATGGGCGAACAGCCGTTTGAGTGCAACTTCTGCTCGGCAAC
GTTTTTCACAAGTACAGCTAAGTCGAGCCATGAGCGAATACGGCACATCA
GAGATCTGAGGTACCAATGCGACCAGTGCACCAAGAGATTCAATACCAAG
ACCTGCTTGAATAAGCACAAGTTCCTGCACTCAGGTCTTAAGCCCTTTGA
GTAAAAGCTTTCTAGACCAT
BS30413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17801-RB | 1146 | CG17801-PB | 1..1034 | 17..1050 | 5170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17801-RB | 1220 | CG17801-RB | 17..1050 | 17..1050 | 5170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17806093..17806890 | 936..139 | 3990 | 100 | Minus |
| 3R | 32079331 | 3R | 17806947..17807069 | 139..17 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 17805905..17806023 | 1054..936 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:32:38 has no hits.
BS30413.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-01 15:19:21 Download gff for
BS30413.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17801-RA | 23..1052 | 23..1052 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:28 Download gff for
BS30413.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17801-RB | 23..1052 | 23..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:16 Download gff for
BS30413.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17801-RB | 23..1052 | 23..1052 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:16 Download gff for
BS30413.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17805907..17806022 | 937..1052 | 100 | <- | Minus |
| 3R | 17806093..17806889 | 140..936 | 100 | <- | Minus |
| 3R | 17806947..17807063 | 23..139 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:28 Download gff for
BS30413.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13631629..13631744 | 937..1052 | 100 | <- | Minus |
| arm_3R | 13631815..13632611 | 140..936 | 100 | <- | Minus |
| arm_3R | 13632669..13632785 | 23..139 | 100 | | Minus |
BS30413.pep Sequence
Translation from 16 to 1053
> BS30413.pep
MFEMKKPSQCHLCASCFCHLNPTIIFCLEVLAKIKDLTGIWLEQNERQPR
HICPSCLNDLNTSIKLKKRIQRVHNEATLRRESGLDEDLESTVSDIEPEG
DSSDLESEESYDSENYPFDKKAEESDIDLNLAHEDRRNEPHNPYDSETPL
IFKHKNPLIETPSFANENLPNKVDAKSPKKGNFIQIGTDLRLLTTYPSIK
VVKPLALAPEDVAAENVPPAKRTARKMQSLVCPKCGRVFKTPYNLKTHMV
RHTGEKNFPCTFCDKRFVTKYLARLHERVRHMGEQPFECNFCSATFFTST
AKSSHERIRHIRDLRYQCDQCTKRFNTKTCLNKHKFLHSGLKPFE*
BS30413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17801-PB | 381 | CG17801-PB | 1..345 | 1..345 | 1864 | 99.7 | Plus |
| CG18764-PA | 409 | CG18764-PA | 4..371 | 9..344 | 351 | 26.5 | Plus |
| CG17803-PB | 587 | CG17803-PB | 108..453 | 28..345 | 335 | 27.8 | Plus |
| CG17803-PA | 587 | CG17803-PA | 108..453 | 28..345 | 335 | 27.8 | Plus |
| CG7357-PA | 430 | CG7357-PA | 3..319 | 8..343 | 299 | 26.8 | Plus |
