BS30503.complete Sequence
1895 bp assembled on 2013-01-14
GenBank Submission: KX802639
> BS30503.complete
GAAGTTATCAGTCGACATGAATGGCACCACGACAGCAGAGCAGGATGCTG
ACAACGTGATTCGCATCCTGGTGGCTACCGACAACCACCTGGGCTATGGC
GAAAAAGACGCGGTGCGCGGCGAGGACAGTTTCACGGCCTTCGAGGAGAT
CCTGGAACTGGCGGTGTCCGAGGATGTGGACATGATTCTGCTGGGAGGTG
ACCTCTTCCACGACGCCGTGCCCAGCCAGAATGCGTTGCACAAATGCATT
GAGCTCCTGCGGCGCTACACATTCGGTGATCGTCCTGTTTCCCTGGAGAT
TCTCAGCGACCAGGGGCAATGCTTCCACAATGCCGTTAACCAGTCGGTGA
ATTACGAGGATCCCAATCTGAACATTGCCATTCCAGTATTCTCTATTCAT
GGCAATCACGACGATCCCAGTGGCTTCGGTCGTTTAAGTTCTCTGGATTT
GCTGAGCACCTCGGGACTGGTTAACTATTTTGGTCGGTGGACCGATCTAA
CCCAGGTGGAGATCAGCCCCGTCCTGATGCGCAAGGGAGAGAGCCAATTG
GCTTTGTACGGACTTAGCCACATCCACGACGGCCGACTGGCAAGGCTTAT
CAAGGATTTTAAGGTGAAGTTTAACTGTCCCGAGAACGTTGCTAATGGCG
AAGACGGTAATGAGTCCAAAGAGGAGGAGGATTGGTTCCATCTGTTAGTG
GTACATCAGAACCGCGCCGATCGGGGACCAAAGAACTATCTACCTGAGGA
CCTGTTGCCATCGTTTTTGCATCTGGTGATTTGGGGTCACGAACACGATT
GCCGCATCGAGCCAGAGGAGAATGCCAAAAAGCGCTTCTATGTCTCTCAG
CCGGGCTCTTCGGTGCCCACCTCCTTGTCCGAGGGTGAGGCCAAGAAAAA
GCACGTCGGCCTGCTCGAGATCTACAAGGGAAAATTCAAGCTTAAGCCGC
TTCCGCTGGAGACTGTGCGGCCTTTCGTCTATGAATCCGTCGTACTGGCC
GACCATGCCGACGAATTAGGCCTTGTCGAAGGTGATGCCTCTACCAAGGT
TTTTAAATTCGCCCAGGAACGAGTGGAGGCAATGATCGAGCGGGCGGTAG
CCCAACACACCGGTCATCCTAAGCAGCCAACGCTACCGCTCATTCGGTTG
CGTCTCCTCTACACAGATGAGTCCTGCATGTTTAATGCGATTCGGTTTGG
AGAGATGTTGAGCACTCGGGTGGCCAACGTTCAGGATGTGGTGCAGTTCA
GTAAGGTGGTTAAGCGTACCAAAACGGAGGCTGTCAATCTGGACAAAGAG
GCATTGCGACGTGCACTGGAAGCGGATAATGCCACTCGCGTGGAGGAGTT
AGTGGATCGATATTTCGAAGAGGCCAAGTCGAATAAGCCTCTCAAGTTAT
TCCACTCAAAGGCTCTTGCAGAGATGACCTATCGACTGTTGGAGCAAAGG
GATGCCGATGCAGCTGAAAATATTGTCAAGTTCTACAAGGAAAAGGCAGT
TGATCACTTGATGGAAGCAATGCCCAACGACGAGAACATCGATGAGGAGC
TTGAAAGATTTAGGGCGCTTCACAAGCATGGGGATCTACTGAAAATGCTT
GACACACAGGGCTTGAAGGTGAAGAAAGAAGAAAAGTCCATGTCTGTGTT
GGGTAGCGAAGTGAACGTCTCCACTGCCCCCGCGACGGGACGAGGAGCTG
CTAGGGGTCGTGGAACTGCACGAACTCGTGCAGGTGCCACAGCTGCCACA
CGTGGAAAGGGCCAGCTAGATGTGACAGTCAGTAGTACGCGAACTTCCGG
CAGGCAACAAACGCTCCTTAGTAGCCTTATGGGCTCTCGTAATACTGCCA
GCTATGTTATATCGGATGATTCCGATTGAAAGCTTTCTAGACCAT
BS30503.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mre11-RA | 1863 | CG16928-PA | 1..1863 | 17..1879 | 9315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mre11-RA | 2013 | CG16928-RA | 90..1953 | 16..1879 | 9320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11282459..11283534 | 244..1319 | 5380 | 100 | Plus |
| 2L | 23513712 | 2L | 11283809..11284118 | 1480..1789 | 1550 | 100 | Plus |
| 2L | 23513712 | 2L | 11282179..11282406 | 16..243 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 11283592..11283756 | 1318..1482 | 825 | 100 | Plus |
| 2L | 23513712 | 2L | 11284185..11284275 | 1789..1879 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:06:55 has no hits.
BS30503.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:39 Download gff for
BS30503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 88..1949 | 17..1878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:01 Download gff for
BS30503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 91..1952 | 17..1878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:29 Download gff for
BS30503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mre11-RA | 91..1952 | 17..1878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:29 Download gff for
BS30503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11282180..11282406 | 17..243 | 100 | -> | Plus |
| 2L | 11282459..11283533 | 244..1318 | 100 | -> | Plus |
| 2L | 11283593..11283753 | 1319..1479 | 100 | -> | Plus |
| 2L | 11283809..11284118 | 1480..1789 | 100 | -> | Plus |
| 2L | 11284186..11284274 | 1790..1878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:01 Download gff for
BS30503.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11282180..11282406 | 17..243 | 100 | -> | Plus |
| arm_2L | 11282459..11283533 | 244..1318 | 100 | -> | Plus |
| arm_2L | 11283593..11283753 | 1319..1479 | 100 | -> | Plus |
| arm_2L | 11283809..11284118 | 1480..1789 | 100 | -> | Plus |
| arm_2L | 11284186..11284274 | 1790..1878 | 100 | | Plus |
BS30503.pep Sequence
Translation from 16 to 1878
> BS30503.pep
MNGTTTAEQDADNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAV
SEDVDMILLGGDLFHDAVPSQNALHKCIELLRRYTFGDRPVSLEILSDQG
QCFHNAVNQSVNYEDPNLNIAIPVFSIHGNHDDPSGFGRLSSLDLLSTSG
LVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRLARLIKDFKV
KFNCPENVANGEDGNESKEEEDWFHLLVVHQNRADRGPKNYLPEDLLPSF
LHLVIWGHEHDCRIEPEENAKKRFYVSQPGSSVPTSLSEGEAKKKHVGLL
EIYKGKFKLKPLPLETVRPFVYESVVLADHADELGLVEGDASTKVFKFAQ
ERVEAMIERAVAQHTGHPKQPTLPLIRLRLLYTDESCMFNAIRFGEMLST
RVANVQDVVQFSKVVKRTKTEAVNLDKEALRRALEADNATRVEELVDRYF
EEAKSNKPLKLFHSKALAEMTYRLLEQRDADAAENIVKFYKEKAVDHLME
AMPNDENIDEELERFRALHKHGDLLKMLDTQGLKVKKEEKSMSVLGSEVN
VSTAPATGRGAARGRGTARTRAGATAATRGKGQLDVTVSSTRTSGRQQTL
LSSLMGSRNTASYVISDDSD*
BS30503.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mre11-PA | 620 | CG16928-PA | 1..620 | 1..620 | 3180 | 100 | Plus |
